Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal

Detalhes bibliográficos
Ano de defesa: 2022
Autor(a) principal: Pareja, Helen Brambila Jorge lattes
Orientador(a): Ishiki, Hamilton Mitsugu lattes
Banca de defesa: Scotti, Luciana lattes, Mareco, Edson Assunção lattes
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade do Oeste Paulista
Programa de Pós-Graduação: Mestrado em Ciências da Saúde
Departamento: Mestrado em Ciências da Saúde
País: Brasil
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: http://bdtd.unoeste.br:8080/jspui/handle/jspui/1386
Resumo: Background: Colorectal cancer new cases affects about 1.8 million worldwide and the conventional treatments are often resistant. There are several factors related to treatment failures, including the mutation of p53 enzyme, that is involved in 50% of cases, causing the loss of its functionality as a tumor suppressor. Objectives: this work aimed to search new inhibitors for the mutant p53. Methods: The molecular modeling methodology were employed: i) the virtual screening in Sistemat-X database, ii) the molecular docking to calculate the interaction energy between the compounds found and the enzyme. Results: The virtual screening using 6,7-dihydro[1,4]dioxino[2,3-f][1,3]benzothiazol-2-amine fragments as a template, resulted in 216 analogous compounds that were submitted to Lipink's rule, and 127 compounds were approved. These compounds were docked with the mutant p53 using the iGEMDOCK program and the 20 best results, with the best binding energies, were submitted to molecular dynamics. The results indicated that the molecules have a good binding capacity, the molecules 1 and 128 showed the greater stability in hydrogen bonds, hydrophobic and van der Waals interactions. The flavonoids-derived compounds position interacts similarly to the thiazole ring of 6,7-dihydro[1,4]dioxino[2,3-f][1,3]benzothiazol-2-amine. Conclusion: The docking energies and the dynamics studies indicated that the compounds found through the virtual search can bind to the active site of the mutant p53, as well as to other enzymes involved in carcinogenic processes, consequently, being potential CCR inhibitors.
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spelling Ishiki, Hamilton Mitsuguhttp://lattes.cnpq.br/7992874417674496Scotti, Lucianahttp://lattes.cnpq.br/6420461345651715Mareco, Edson Assunçãohttp://lattes.cnpq.br/0300631138130078http://lattes.cnpq.br/8792800011270177Pareja, Helen Brambila Jorge2022-02-25T20:34:03Z2022-01-10PAREJA, Helen Brambila Jorge. Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal. 2022. Dissertação ( Mestrado em Ciência da Saúde) - Universidade do Oeste Paulista, Presidente Prudente, SP, 2022.http://bdtd.unoeste.br:8080/jspui/handle/jspui/1386Background: Colorectal cancer new cases affects about 1.8 million worldwide and the conventional treatments are often resistant. There are several factors related to treatment failures, including the mutation of p53 enzyme, that is involved in 50% of cases, causing the loss of its functionality as a tumor suppressor. Objectives: this work aimed to search new inhibitors for the mutant p53. Methods: The molecular modeling methodology were employed: i) the virtual screening in Sistemat-X database, ii) the molecular docking to calculate the interaction energy between the compounds found and the enzyme. Results: The virtual screening using 6,7-dihydro[1,4]dioxino[2,3-f][1,3]benzothiazol-2-amine fragments as a template, resulted in 216 analogous compounds that were submitted to Lipink's rule, and 127 compounds were approved. These compounds were docked with the mutant p53 using the iGEMDOCK program and the 20 best results, with the best binding energies, were submitted to molecular dynamics. The results indicated that the molecules have a good binding capacity, the molecules 1 and 128 showed the greater stability in hydrogen bonds, hydrophobic and van der Waals interactions. The flavonoids-derived compounds position interacts similarly to the thiazole ring of 6,7-dihydro[1,4]dioxino[2,3-f][1,3]benzothiazol-2-amine. Conclusion: The docking energies and the dynamics studies indicated that the compounds found through the virtual search can bind to the active site of the mutant p53, as well as to other enzymes involved in carcinogenic processes, consequently, being potential CCR inhibitors.Antecedentes: O câncer colorretal atinge cerca de 1.8 milhões de novos casos no mundo e os tratamentos convencionais frequentemente apresentam resistências. São diversos os fatores relacionados aos insucessos no tratamento, dentre o qual a mutação da enzima p53, envolvida em 50% dos casos, ocasionando a perda de sua funcionalidade como supressora tumoral. Objetivo: este trabalho teve o intuito de pesquisar novos inibidores para a p53 mutante. Metodologia: As metodologias de modelagem molecular que foram empregadas: i) a busca virtual no banco de dados Sistemat-X ii) o acoplamento molecular para avaliar a energia de interação entre os compostos encontrados e a enzima. Resultados: A busca virtual utilizando fragmentos da 6,7-diidro[1,4]dioxino[2,3-f][1,3]benzotiazol-2-amina como molde, resultou em 216 compostos análogos que foram submetidos ao teste de Lipink´s, sendo aprovados 127 compostos. Estes foram ancorados com a p53 mutante com o emprego do programa iGEMDOCK e os 20 melhores resultados, com as melhores energias de ligação, foram submetidos aos cálculos de dinâmica molecular. Os resultados indicaram que as moléculas possuem boa capacidade de ligação, sendo que os ligantes 1 e 128 apresentaram maior estabilidade nas ligações de hidrogênio, interações hidrofóbicas e de van der Waals. A posição dos compostos derivados de flavonóides interagem similarmente ao anel tiazol do 6,7-diidro[1,4]dioxino[2,3-f][1,3]benzotiazol-2-amina. Conclusão: As energias do docking e os estudos de dinâmica indicaram que os compostos encontrados através da busca virtual podem se ligar ao sítio ativo da p53 mutante, bem como à outras enzimas envolvidas em processos carcinogênicos, consequentemente, podendo ser potenciais inibidores do CCR.Submitted by Jakeline Ortega (jakortega@unoeste.br) on 2022-02-25T20:34:03Z No. of bitstreams: 2 Helen Brambila Jorge Pareja.pdf: 1931149 bytes, checksum: 94a92260c84a50fbfcfe9fa35120508b (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Made available in DSpace on 2022-02-25T20:34:03Z (GMT). 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dc.title.por.fl_str_mv Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal
dc.title.alternative.eng.fl_str_mv Computational studies for the selections of natural inhibitors of mutated p53 protein aiming to combat colorretal adenocarcinoma
title Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal
spellingShingle Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal
Pareja, Helen Brambila Jorge
câncer colorretal
modelagem molecular
virtual screening
docking
compostos naturais
docking molecular
enzima p53 mutante
molecular modeling
virtual screening
natural compounds
docking molecular,
mutation p53 enzyme
colorectal cancer
CIENCIAS DA SAUDE::MEDICINA
title_short Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal
title_full Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal
title_fullStr Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal
title_full_unstemmed Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal
title_sort Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal
author Pareja, Helen Brambila Jorge
author_facet Pareja, Helen Brambila Jorge
author_role author
dc.contributor.advisor1.fl_str_mv Ishiki, Hamilton Mitsugu
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/7992874417674496
dc.contributor.referee1.fl_str_mv Scotti, Luciana
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/6420461345651715
dc.contributor.referee2.fl_str_mv Mareco, Edson Assunção
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/0300631138130078
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/8792800011270177
dc.contributor.author.fl_str_mv Pareja, Helen Brambila Jorge
contributor_str_mv Ishiki, Hamilton Mitsugu
Scotti, Luciana
Mareco, Edson Assunção
dc.subject.por.fl_str_mv câncer colorretal
modelagem molecular
virtual screening
docking
compostos naturais
docking molecular
topic câncer colorretal
modelagem molecular
virtual screening
docking
compostos naturais
docking molecular
enzima p53 mutante
molecular modeling
virtual screening
natural compounds
docking molecular,
mutation p53 enzyme
colorectal cancer
CIENCIAS DA SAUDE::MEDICINA
dc.subject.eng.fl_str_mv enzima p53 mutante
molecular modeling
virtual screening
natural compounds
docking molecular,
mutation p53 enzyme
colorectal cancer
dc.subject.cnpq.fl_str_mv CIENCIAS DA SAUDE::MEDICINA
description Background: Colorectal cancer new cases affects about 1.8 million worldwide and the conventional treatments are often resistant. There are several factors related to treatment failures, including the mutation of p53 enzyme, that is involved in 50% of cases, causing the loss of its functionality as a tumor suppressor. Objectives: this work aimed to search new inhibitors for the mutant p53. Methods: The molecular modeling methodology were employed: i) the virtual screening in Sistemat-X database, ii) the molecular docking to calculate the interaction energy between the compounds found and the enzyme. Results: The virtual screening using 6,7-dihydro[1,4]dioxino[2,3-f][1,3]benzothiazol-2-amine fragments as a template, resulted in 216 analogous compounds that were submitted to Lipink's rule, and 127 compounds were approved. These compounds were docked with the mutant p53 using the iGEMDOCK program and the 20 best results, with the best binding energies, were submitted to molecular dynamics. The results indicated that the molecules have a good binding capacity, the molecules 1 and 128 showed the greater stability in hydrogen bonds, hydrophobic and van der Waals interactions. The flavonoids-derived compounds position interacts similarly to the thiazole ring of 6,7-dihydro[1,4]dioxino[2,3-f][1,3]benzothiazol-2-amine. Conclusion: The docking energies and the dynamics studies indicated that the compounds found through the virtual search can bind to the active site of the mutant p53, as well as to other enzymes involved in carcinogenic processes, consequently, being potential CCR inhibitors.
publishDate 2022
dc.date.accessioned.fl_str_mv 2022-02-25T20:34:03Z
dc.date.issued.fl_str_mv 2022-01-10
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dc.identifier.uri.fl_str_mv http://bdtd.unoeste.br:8080/jspui/handle/jspui/1386
identifier_str_mv PAREJA, Helen Brambila Jorge. Estudos computacionais para a seleção de inibidores naturais da proteína p53 mutada visando o combate ao adenocarcinoma colorretal. 2022. Dissertação ( Mestrado em Ciência da Saúde) - Universidade do Oeste Paulista, Presidente Prudente, SP, 2022.
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