A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico

Detalhes bibliográficos
Ano de defesa: 2013
Autor(a) principal: Wink, Priscila Lamb lattes
Orientador(a): Santos, Di?genes Santiago lattes
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Pontif?cia Universidade Cat?lica do Rio Grande do Sul
Programa de Pós-Graduação: Programa de P?s-Gradua??o em Biologia Celular e Molecular
Departamento: Faculdade de Bioci?ncias
País: BR
Palavras-chave em Português:
Área do conhecimento CNPq:
Link de acesso: http://tede2.pucrs.br/tede2/handle/tede/5473
Resumo: Human tuberculosis (TB) is a major global health threat. The disease s increasing prevalence, coupled with the emergence of drug-resistant strains and the devastating effects of co-infection with human immunodeficiency virus (HIV) indicate an urgent need for the development of new and more efficient drugs to combat the disease's causative agent, Mycobacterium tuberculosis. Global health authorities have also begun to recognize the need for drugs that can kill the mycobacteria in its different physiological states including but not limited to latent TB infection. A more comprehensive understanding of the bacilli's nucleotide metabolic pathways, in particular purine and pyrimidine salvage pathways, could aid in the development of new therapeutic strategies to reduce the incidence of TB worldwide. Nucleoside hydrolase catalyzes the irreversible hydrolysis of N-glycosidic bond of ribonucleosides, forming α-D-ribose and the corresponding base. This work describes the amplification, cloning, expression and purification of the iunH-encoding purine nucleoside hydrolase from M. tuberculosis (MtIAGU-NH). Results from steadystate kinetic experiments indicate that MtIAGU-NH has broad substrate specificity, accepting inosine, adenosine, guanosine, and uridine as substrates. Kinetics analysis utilizing fluorescence spectroscopy of ribose binding to MtIAGU-NH suggests that prior to ligand association there are two pre-existing forms of the enzyme. We determined the intracellular concentrations of inosine, uridine, hypoxanthine, and uracil as well as the reaction s thermodynamic parameters. Thermodynamic activation parameters (Ea, ΔG#, ΔS#, ΔH#) for the MtIAGU-NH-catalyzed chemical reaction, along with results from mass spectrometry, isothermal titration calorimetry (ITC), pH-rate profile experiments, multiple sequence alignment, and molecular docking experiments are also presented. Knockout experiments of the iunH gene indicate that this gene is not essential for the growth of M. tuberculosis H37Rv underutilized experimental conditions. The data presented here contribute to our understanding of MtIAGU-NH, providing a solid basis for the development of efficient prophylactic and therapeutic strategies to reduce the global incidence of TB.
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spelling Santos, Di?genes SantiagoCPF:18729258804http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4721461Z7CPF:00792297008http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4550356Y0Wink, Priscila Lamb2015-04-14T14:51:28Z2013-10-072013-07-30WINK, Priscila Lamb. A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico. 2013. 100 f. Tese (Doutorado em Biologia Celular e Molecular) - Pontif?cia Universidade Cat?lica do Rio Grande do Sul, Porto Alegre, 2013.http://tede2.pucrs.br/tede2/handle/tede/5473Human tuberculosis (TB) is a major global health threat. The disease s increasing prevalence, coupled with the emergence of drug-resistant strains and the devastating effects of co-infection with human immunodeficiency virus (HIV) indicate an urgent need for the development of new and more efficient drugs to combat the disease's causative agent, Mycobacterium tuberculosis. Global health authorities have also begun to recognize the need for drugs that can kill the mycobacteria in its different physiological states including but not limited to latent TB infection. A more comprehensive understanding of the bacilli's nucleotide metabolic pathways, in particular purine and pyrimidine salvage pathways, could aid in the development of new therapeutic strategies to reduce the incidence of TB worldwide. Nucleoside hydrolase catalyzes the irreversible hydrolysis of N-glycosidic bond of ribonucleosides, forming α-D-ribose and the corresponding base. This work describes the amplification, cloning, expression and purification of the iunH-encoding purine nucleoside hydrolase from M. tuberculosis (MtIAGU-NH). Results from steadystate kinetic experiments indicate that MtIAGU-NH has broad substrate specificity, accepting inosine, adenosine, guanosine, and uridine as substrates. Kinetics analysis utilizing fluorescence spectroscopy of ribose binding to MtIAGU-NH suggests that prior to ligand association there are two pre-existing forms of the enzyme. We determined the intracellular concentrations of inosine, uridine, hypoxanthine, and uracil as well as the reaction s thermodynamic parameters. Thermodynamic activation parameters (Ea, ΔG#, ΔS#, ΔH#) for the MtIAGU-NH-catalyzed chemical reaction, along with results from mass spectrometry, isothermal titration calorimetry (ITC), pH-rate profile experiments, multiple sequence alignment, and molecular docking experiments are also presented. Knockout experiments of the iunH gene indicate that this gene is not essential for the growth of M. tuberculosis H37Rv underutilized experimental conditions. The data presented here contribute to our understanding of MtIAGU-NH, providing a solid basis for the development of efficient prophylactic and therapeutic strategies to reduce the global incidence of TB.A tuberculose humana (TB) ? considerada uma amea?a ? sa?de global. O aumento na preval?ncia da doen?a, a emerg?ncia de cepas resistentes e a coinfec??o com o v?rus da imunodefici?ncia humana levaram ? urgente necessidade do desenvolvimento de novas drogas mais eficientes para o combate do agente causativo da TB, Mycobacterium tuberculosis. Al?m disso, h? a necessidade de novas drogas contra a micobact?ria nos seus diferentes estados fisiol?gicos, incluindo a TB latente. Um maior entendimento sobre as vias metab?licas de nucleot?deos do bacilo da TB, em particular as vias de salvamento de purinas e pirimidinas, levariam ao desenvolvimento de novas estrat?gias terap?uticas para controlar a incid?ncia global de TB. A hidrolase de nucleos?deos catalisa a hidr?lise irrevers?vel da liga??o N-glicos?dica de ribonucleos?deos, dando origem ? α-D-ribose e sua base livre correspondente. Este trabalho descreve a amplifica??o e clonagem do gene iunH, e a express?o e purifica??o da enzima recombinante hidrolase de nucleos?deos pur?nicos de M. tuberculosis (MtIAGU-NH). Os resultados de cin?tica no estado estacion?rio mostram que a MtIAGU-NH possui uma ampla especificidade pelos substratos, utilizando inosina, adenosina, guanosina e uridina como substratos. As medidas cin?ticas da liga??o da ribose ? MtIAGU-NH por espectroscopia fluorim?trica sugerem a exist?ncia de duas formas da enzima em equil?brio, relacionadas ? associa??o ao ligante. As concentra??es intracelulares de inosina, uridina, hipoxantina e uracil foram determinadas e os par?metros termodin?micos, estimados. Os par?metros termodin?micos de ativa??o (Ea, ΔG#, ΔS#, ΔH#) para a rea??o qu?mica catalisada pela MtIAGU-NH, al?m dos resultados de espectrometria de massa, calorimetria de titula??o isot?rmica, experimento de perfil de pH, alinhamento de m?ltiplas sequ?ncias e experimentos de docagem molecular tamb?m s?o apresentados neste trabalho. O nocaute do gene iunH mostrou que este n?o ? essencial para o crescimento do bacilo M. tuberculosis H37Rv nas condi??es experimentais empregadas. Os resultados aqui descritos dever?o ser ?teis para um melhor entendimento sobre a enzima MtIAGU-NH, fornecendo bases s?lidas para o desenvolvimento de estrat?gias terap?uticas e preventivas para diminuir a incid?ncia global da TB.Made available in DSpace on 2015-04-14T14:51:28Z (GMT). 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dc.title.por.fl_str_mv A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico
title A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico
spellingShingle A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico
Wink, Priscila Lamb
BIOLOGIA MOLECULAR
BIOLOGIA CELULAR
TUBERCULOSE
ENZIMAS
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA::BIOLOGIA MOLECULAR
title_short A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico
title_full A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico
title_fullStr A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico
title_full_unstemmed A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico
title_sort A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico
author Wink, Priscila Lamb
author_facet Wink, Priscila Lamb
author_role author
dc.contributor.advisor1.fl_str_mv Santos, Di?genes Santiago
dc.contributor.advisor1ID.fl_str_mv CPF:18729258804
dc.contributor.advisor1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4721461Z7
dc.contributor.authorID.fl_str_mv CPF:00792297008
dc.contributor.authorLattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4550356Y0
dc.contributor.author.fl_str_mv Wink, Priscila Lamb
contributor_str_mv Santos, Di?genes Santiago
dc.subject.por.fl_str_mv BIOLOGIA MOLECULAR
BIOLOGIA CELULAR
TUBERCULOSE
ENZIMAS
topic BIOLOGIA MOLECULAR
BIOLOGIA CELULAR
TUBERCULOSE
ENZIMAS
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA::BIOLOGIA MOLECULAR
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA::BIOLOGIA MOLECULAR
description Human tuberculosis (TB) is a major global health threat. The disease s increasing prevalence, coupled with the emergence of drug-resistant strains and the devastating effects of co-infection with human immunodeficiency virus (HIV) indicate an urgent need for the development of new and more efficient drugs to combat the disease's causative agent, Mycobacterium tuberculosis. Global health authorities have also begun to recognize the need for drugs that can kill the mycobacteria in its different physiological states including but not limited to latent TB infection. A more comprehensive understanding of the bacilli's nucleotide metabolic pathways, in particular purine and pyrimidine salvage pathways, could aid in the development of new therapeutic strategies to reduce the incidence of TB worldwide. Nucleoside hydrolase catalyzes the irreversible hydrolysis of N-glycosidic bond of ribonucleosides, forming α-D-ribose and the corresponding base. This work describes the amplification, cloning, expression and purification of the iunH-encoding purine nucleoside hydrolase from M. tuberculosis (MtIAGU-NH). Results from steadystate kinetic experiments indicate that MtIAGU-NH has broad substrate specificity, accepting inosine, adenosine, guanosine, and uridine as substrates. Kinetics analysis utilizing fluorescence spectroscopy of ribose binding to MtIAGU-NH suggests that prior to ligand association there are two pre-existing forms of the enzyme. We determined the intracellular concentrations of inosine, uridine, hypoxanthine, and uracil as well as the reaction s thermodynamic parameters. Thermodynamic activation parameters (Ea, ΔG#, ΔS#, ΔH#) for the MtIAGU-NH-catalyzed chemical reaction, along with results from mass spectrometry, isothermal titration calorimetry (ITC), pH-rate profile experiments, multiple sequence alignment, and molecular docking experiments are also presented. Knockout experiments of the iunH gene indicate that this gene is not essential for the growth of M. tuberculosis H37Rv underutilized experimental conditions. The data presented here contribute to our understanding of MtIAGU-NH, providing a solid basis for the development of efficient prophylactic and therapeutic strategies to reduce the global incidence of TB.
publishDate 2013
dc.date.available.fl_str_mv 2013-10-07
dc.date.issued.fl_str_mv 2013-07-30
dc.date.accessioned.fl_str_mv 2015-04-14T14:51:28Z
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dc.identifier.citation.fl_str_mv WINK, Priscila Lamb. A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico. 2013. 100 f. Tese (Doutorado em Biologia Celular e Molecular) - Pontif?cia Universidade Cat?lica do Rio Grande do Sul, Porto Alegre, 2013.
dc.identifier.uri.fl_str_mv http://tede2.pucrs.br/tede2/handle/tede/5473
identifier_str_mv WINK, Priscila Lamb. A enzima hidrolase de nucleos?deos pur?nicos de Mycobacterium tuberculosis H37RV : caracteriza??o bioqu?mica, termodin?mica e estudos de nocaute g?nico. 2013. 100 f. Tese (Doutorado em Biologia Celular e Molecular) - Pontif?cia Universidade Cat?lica do Rio Grande do Sul, Porto Alegre, 2013.
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