Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais

Detalhes bibliográficos
Ano de defesa: 2019
Autor(a) principal: Rehem, Jonathan Moreira Cardozo lattes
Orientador(a): Angelo, Michele F?lvia lattes
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Estadual de Feira de Santana
Programa de Pós-Graduação: Mestrado em Computa??o Aplicada
Departamento: DEPARTAMENTO DE CI?NCIAS EXATAS
País: Brasil
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: http://tede2.uefs.br:8080/handle/tede/1342
Resumo: Glomerulopathies, kidney diseases, affect thousands of people in Brazil and in the entire world, this number is growing constantly. The glomeruli are microscopic structures present in kidney and your examination by a doctor determines the kind and the degree of kidney disease. Kidney tissue images can be scanned or photographed, enabling the computational processing. Nowadays, detection and segmentation are made manually by a pathologist doctor. Thus, this research aims at propose a glomeruli automatic detection method on histological digital kidney tissue images. For this, we use deep learning techniques to train capable models to automate this task. Digital images photographed in varied approximation scales was used to compose train and test datasets. Tensorflow Object Detection API (Application Programming Interface) framework was used implements, train and test the models SSD (Single Shot Detection) Inception V2(SI2) and Faster RCNN (Region-based Convolutional Neural Network) Inception V2 (FRI2). Reaching 0.8831 mAP - 0.94 F1 Score when using the SI2 model, 0.8723 mAP and 0.97 F1 Score when utilizing FRI2 model. The SI2 model. The SI2 model is the most efficient for this task because it is 64% faster in training time and 98% faster in detecting glomeruli in each image. This work demonstrate the efficiency of deep learning techniques as solution for this problem, advancing the improvement of techniques for gloeruli automated detection.
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spelling Angelo, Michele F?lvia26554093885http://lattes.cnpq.br/603227384984728500667602593http://lattes.cnpq.br/5711710989208932Rehem, Jonathan Moreira Cardozo2022-04-19T20:45:49Z2019-08-19REHEM, Jonathan Moreira Cardozo. Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais. 2019. 95 f. Disserta??o (Mestrado em Computa??o Aplicada)- Universidade Estadual de Feira de Santana, Feira de Santana, 2019.http://tede2.uefs.br:8080/handle/tede/1342Glomerulopathies, kidney diseases, affect thousands of people in Brazil and in the entire world, this number is growing constantly. The glomeruli are microscopic structures present in kidney and your examination by a doctor determines the kind and the degree of kidney disease. Kidney tissue images can be scanned or photographed, enabling the computational processing. Nowadays, detection and segmentation are made manually by a pathologist doctor. Thus, this research aims at propose a glomeruli automatic detection method on histological digital kidney tissue images. For this, we use deep learning techniques to train capable models to automate this task. Digital images photographed in varied approximation scales was used to compose train and test datasets. Tensorflow Object Detection API (Application Programming Interface) framework was used implements, train and test the models SSD (Single Shot Detection) Inception V2(SI2) and Faster RCNN (Region-based Convolutional Neural Network) Inception V2 (FRI2). Reaching 0.8831 mAP - 0.94 F1 Score when using the SI2 model, 0.8723 mAP and 0.97 F1 Score when utilizing FRI2 model. The SI2 model. The SI2 model is the most efficient for this task because it is 64% faster in training time and 98% faster in detecting glomeruli in each image. This work demonstrate the efficiency of deep learning techniques as solution for this problem, advancing the improvement of techniques for gloeruli automated detection.As glomerulopatias, doen?as renais, acometem milhares de pessoas no Brasil e no mundo e este n?mero vem crescendo. Os glom?rulos s?o estruturas microsc?picas presentes nos rins e sua an?lise por um m?dico patologista ? o que determina o tipo e o grau da doen?a renal. Imagens dos tecidos renais podem ser digitalizadas ou fotografadas, o que torna poss?vel o processamento por computador. Atualmente, a detec??o e a separa??o de glom?rulos ? feita manualmente pelo patologista. Assim, esta pesquisa tem como objetivo propor um m?todo de detec??o autom?tico de glom?rulos em imagens histol?gicas renais digitais. Para isso, foram utilizadas t?cnicas de aprendizagem profunda a fim de treinar modelos que fossem capazes de automatizar esta tarefa. Imagens digitais de l?minas histol?gicas fotografadas em variadas escalas de aproxima??o foram utilizadas para compor os datasets de treinamento e testes. O framework Tensorflow Object Detection API foi utilizado como plataforma de implementa??o no treinamento e testes dos modelos SSD Inception V2 e Faster RCNN Inception V2. Obteve-se 0.8831 mAP e 0.94 F1 Score utilizando o modelo SI2, e 0.8723 mAP e 0.97 F1 Score utilizando o modelo FRI2. O modelo SI2 ? o mais eficiente para esta tarefa, j? que ? 64% mais r?pido no tempo necess?rio para o treinamento e 98% mais r?pido na detec??o de glom?rulos em cada imagem. Este trabalho demonstra a efici?ncia do Deep Learning na resolu??o deste problema, avan?ando no aperfei?oamento das t?cnicas de detec??o autom?tica de glom?rulos.Submitted by Ricardo Cedraz Duque Moliterno (ricardo.moliterno@uefs.br) on 2022-04-19T20:45:49Z No. of bitstreams: 1 dissertacao_jonathan_cardozo_versao_final.pdf: 4815629 bytes, checksum: 0f1692645a1026115d04d06bef64055a (MD5)Made available in DSpace on 2022-04-19T20:45:49Z (GMT). No. of bitstreams: 1 dissertacao_jonathan_cardozo_versao_final.pdf: 4815629 bytes, checksum: 0f1692645a1026115d04d06bef64055a (MD5) Previous issue date: 2019-08-19application/pdfporUniversidade Estadual de Feira de SantanaMestrado em Computa??o AplicadaUEFSBrasilDEPARTAMENTO DE CI?NCIAS EXATASDeep learningRedes Neurais ConvolucionaisGlom?rulosDetec??o de objetosDeep learningConvolutional Neural NetworksGlomeruliObject DetectionCIENCIAS EXATAS E DA TERRA::CIENCIA DA COMPUTACAODetec??o autom?tica de glom?rulos em imagens histol?gicas renais digitaisinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis303317282311144204600600600-54868328166115062113671711205811204509info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UEFSinstname:Universidade Estadual de Feira de Santana (UEFS)instacron:UEFSORIGINALdissertacao_jonathan_cardozo_versao_final.pdfdissertacao_jonathan_cardozo_versao_final.pdfapplication/pdf4815629http://tede2.uefs.br:8080/bitstream/tede/1342/2/dissertacao_jonathan_cardozo_versao_final.pdf0f1692645a1026115d04d06bef64055aMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82089http://tede2.uefs.br:8080/bitstream/tede/1342/1/license.txt7b5ba3d2445355f386edab96125d42b7MD51tede/13422022-04-19 17:45:49.067oai:tede2.uefs.br:8080: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Biblioteca Digital de Teses e Dissertaçõeshttp://tede2.uefs.br:8080/PUBhttp://tede2.uefs.br:8080/oai/requestbcuefs@uefs.br|| bcref@uefs.br||bcuefs@uefs.bropendoar:2022-04-19T20:45:49Biblioteca Digital de Teses e Dissertações da UEFS - Universidade Estadual de Feira de Santana (UEFS)false
dc.title.por.fl_str_mv Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais
title Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais
spellingShingle Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais
Rehem, Jonathan Moreira Cardozo
Deep learning
Redes Neurais Convolucionais
Glom?rulos
Detec??o de objetos
Deep learning
Convolutional Neural Networks
Glomeruli
Object Detection
CIENCIAS EXATAS E DA TERRA::CIENCIA DA COMPUTACAO
title_short Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais
title_full Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais
title_fullStr Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais
title_full_unstemmed Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais
title_sort Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais
author Rehem, Jonathan Moreira Cardozo
author_facet Rehem, Jonathan Moreira Cardozo
author_role author
dc.contributor.advisor1.fl_str_mv Angelo, Michele F?lvia
dc.contributor.advisor1ID.fl_str_mv 26554093885
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/6032273849847285
dc.contributor.authorID.fl_str_mv 00667602593
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/5711710989208932
dc.contributor.author.fl_str_mv Rehem, Jonathan Moreira Cardozo
contributor_str_mv Angelo, Michele F?lvia
dc.subject.por.fl_str_mv Deep learning
Redes Neurais Convolucionais
Glom?rulos
Detec??o de objetos
topic Deep learning
Redes Neurais Convolucionais
Glom?rulos
Detec??o de objetos
Deep learning
Convolutional Neural Networks
Glomeruli
Object Detection
CIENCIAS EXATAS E DA TERRA::CIENCIA DA COMPUTACAO
dc.subject.eng.fl_str_mv Deep learning
Convolutional Neural Networks
Glomeruli
Object Detection
dc.subject.cnpq.fl_str_mv CIENCIAS EXATAS E DA TERRA::CIENCIA DA COMPUTACAO
description Glomerulopathies, kidney diseases, affect thousands of people in Brazil and in the entire world, this number is growing constantly. The glomeruli are microscopic structures present in kidney and your examination by a doctor determines the kind and the degree of kidney disease. Kidney tissue images can be scanned or photographed, enabling the computational processing. Nowadays, detection and segmentation are made manually by a pathologist doctor. Thus, this research aims at propose a glomeruli automatic detection method on histological digital kidney tissue images. For this, we use deep learning techniques to train capable models to automate this task. Digital images photographed in varied approximation scales was used to compose train and test datasets. Tensorflow Object Detection API (Application Programming Interface) framework was used implements, train and test the models SSD (Single Shot Detection) Inception V2(SI2) and Faster RCNN (Region-based Convolutional Neural Network) Inception V2 (FRI2). Reaching 0.8831 mAP - 0.94 F1 Score when using the SI2 model, 0.8723 mAP and 0.97 F1 Score when utilizing FRI2 model. The SI2 model. The SI2 model is the most efficient for this task because it is 64% faster in training time and 98% faster in detecting glomeruli in each image. This work demonstrate the efficiency of deep learning techniques as solution for this problem, advancing the improvement of techniques for gloeruli automated detection.
publishDate 2019
dc.date.issued.fl_str_mv 2019-08-19
dc.date.accessioned.fl_str_mv 2022-04-19T20:45:49Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv REHEM, Jonathan Moreira Cardozo. Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais. 2019. 95 f. Disserta??o (Mestrado em Computa??o Aplicada)- Universidade Estadual de Feira de Santana, Feira de Santana, 2019.
dc.identifier.uri.fl_str_mv http://tede2.uefs.br:8080/handle/tede/1342
identifier_str_mv REHEM, Jonathan Moreira Cardozo. Detec??o autom?tica de glom?rulos em imagens histol?gicas renais digitais. 2019. 95 f. Disserta??o (Mestrado em Computa??o Aplicada)- Universidade Estadual de Feira de Santana, Feira de Santana, 2019.
url http://tede2.uefs.br:8080/handle/tede/1342
dc.language.iso.fl_str_mv por
language por
dc.relation.program.fl_str_mv 303317282311144204
dc.relation.confidence.fl_str_mv 600
600
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dc.relation.cnpq.fl_str_mv 3671711205811204509
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eu_rights_str_mv openAccess
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dc.publisher.none.fl_str_mv Universidade Estadual de Feira de Santana
dc.publisher.program.fl_str_mv Mestrado em Computa??o Aplicada
dc.publisher.initials.fl_str_mv UEFS
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv DEPARTAMENTO DE CI?NCIAS EXATAS
publisher.none.fl_str_mv Universidade Estadual de Feira de Santana
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações da UEFS
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reponame_str Biblioteca Digital de Teses e Dissertações da UEFS
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