S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD

Detalhes bibliográficos
Ano de defesa: 2016
Autor(a) principal: Penetra, Pedro Lessa lattes
Orientador(a): K?mmerle, Arthur Eugen lattes
Banca de defesa: K?mmerle, Arthur Eugen lattes, Moura, Ricardo Ol?mpio de lattes, Neves, Amanda Porto lattes
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal Rural do Rio de Janeiro
Programa de Pós-Graduação: Programa de P?s-Gradua??o em Qu?mica
Departamento: Instituto de Ci?ncias Exatas
País: Brasil
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: https://tede.ufrrj.br/jspui/handle/jspui/5405
Resumo: Asthma and Chronic Obstructive Pulmonary Disease (COPD) are chronic inflammatory diseases with varying levels of airflow obstruction. Recognition of the critical role of inflammation in the process has been directed the treatment axis for the prevention or blockage of inflammatory changes. For this purpose new drugs have been studied and among them the specific inhibitors of phosphodiesterase 4 (PDE4) have presented promising results due to the control of cAMP levels, which are implicated in smooth, inflammatory and immune muscle cells. This work aimed to synthesize new (Z)- 2-benzamide-3-phenylacrylic acids designed as PDE4 inhibitors (iPDE4), based on pharmacophores present in cilomilast and roflumilast, and to evaluate the inhibitory activity of the synthesized compounds in a theoretical enzymatic model of PDE4 molecular docking. The synthesis for obtaining the new acids goes through four steps. First, a series of succinimide derivatives, which are obtained from the reaction of a substituted benzoic acid with an N-hydroxysuccinimide, DCC in THF at room temperature for 20 h (93-79%). Second, hippuric acid derivatives were produced from the the reaction of succinimide intermediates of the previous step with glycine in basics environment (76-66%). Third, preparation of azalactones following an Erlemmeyer Ploch methodology where the derivatives of hippuric acid, substituted benzaldehydes, sodium acetate are reacted at 120 ?C in acetic anhydride (59-49%). Finally, the hydrolysis of azalactones with sodium hydroxide in acetonitrile at room temperature led to the desired acids (96-92%). Molecular docking studies were performed in the GOLD program with the catalytic site of PDE4D (PDB 1XOR) defined around 10.0 ? from tyrosine 159. Redocking was done in order to chose the best base and to validate the model. The best results were obtained with the PLP basis. The acid compounds (1-7) were minimized using Spartan Pro 14.0 software (PM6) and the docking studies were done providing the scores (72,45 - 78,06). Despite the high score values it was make a visual analysis of the interaction poses between ligand and bioreceptor. The main conformers showed the main expected interactions of PDE4 inhibitors: hydrogen bonds of the dimethoxyphenyl groups with Gln369, ?-stacking with Phe372 and hydrophilic interactions with the metal site. The synthetic route for obtaining (Z)-2-benzamido-3- phenylacrylic acid was viable and presented good yields, through stable reaction intermediates. Molecular docking studies with the final products presented a theoretical inhibition profile for PDE4 very similar to the inhibitors already described in the literature. The compounds are now under evaluation of theirs PDE4 inhibitory profiles
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spelling K?mmerle, Arthur Eugen053.978.847-78http://lattes.cnpq.br/5598000938584486K?mmerle, Arthur Eugen053.978.487-78http://lattes.cnpq.br/5598000938584486Moura, Ricardo Ol?mpio dehttp://lattes.cnpq.br/3707776918049437Neves, Amanda Portohttp://lattes.cnpq.br/7460226353493536147.155.437-61http://lattes.cnpq.br/2576311429133890Penetra, Pedro Lessa2022-02-18T15:58:30Z2016-07-21PENETRA, Pedro Lessa. S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD. 2016.102 f.. Disserta??o( Mestrado em Qu?mica) - Instituto de Ci?ncias Exatas, Universidade Federal Rural do Rio de Janeiro, Serop?dica, RJ, 2016.https://tede.ufrrj.br/jspui/handle/jspui/5405Asthma and Chronic Obstructive Pulmonary Disease (COPD) are chronic inflammatory diseases with varying levels of airflow obstruction. Recognition of the critical role of inflammation in the process has been directed the treatment axis for the prevention or blockage of inflammatory changes. For this purpose new drugs have been studied and among them the specific inhibitors of phosphodiesterase 4 (PDE4) have presented promising results due to the control of cAMP levels, which are implicated in smooth, inflammatory and immune muscle cells. This work aimed to synthesize new (Z)- 2-benzamide-3-phenylacrylic acids designed as PDE4 inhibitors (iPDE4), based on pharmacophores present in cilomilast and roflumilast, and to evaluate the inhibitory activity of the synthesized compounds in a theoretical enzymatic model of PDE4 molecular docking. The synthesis for obtaining the new acids goes through four steps. First, a series of succinimide derivatives, which are obtained from the reaction of a substituted benzoic acid with an N-hydroxysuccinimide, DCC in THF at room temperature for 20 h (93-79%). Second, hippuric acid derivatives were produced from the the reaction of succinimide intermediates of the previous step with glycine in basics environment (76-66%). Third, preparation of azalactones following an Erlemmeyer Ploch methodology where the derivatives of hippuric acid, substituted benzaldehydes, sodium acetate are reacted at 120 ?C in acetic anhydride (59-49%). Finally, the hydrolysis of azalactones with sodium hydroxide in acetonitrile at room temperature led to the desired acids (96-92%). Molecular docking studies were performed in the GOLD program with the catalytic site of PDE4D (PDB 1XOR) defined around 10.0 ? from tyrosine 159. Redocking was done in order to chose the best base and to validate the model. The best results were obtained with the PLP basis. The acid compounds (1-7) were minimized using Spartan Pro 14.0 software (PM6) and the docking studies were done providing the scores (72,45 - 78,06). Despite the high score values it was make a visual analysis of the interaction poses between ligand and bioreceptor. The main conformers showed the main expected interactions of PDE4 inhibitors: hydrogen bonds of the dimethoxyphenyl groups with Gln369, ?-stacking with Phe372 and hydrophilic interactions with the metal site. The synthetic route for obtaining (Z)-2-benzamido-3- phenylacrylic acid was viable and presented good yields, through stable reaction intermediates. Molecular docking studies with the final products presented a theoretical inhibition profile for PDE4 very similar to the inhibitors already described in the literature. The compounds are now under evaluation of theirs PDE4 inhibitory profilesAsma e Doen?a Pulmonar Obstrutiva Cr?nica (DPOC) s?o doen?as inflamat?rias cr?nicas com diferentes n?veis de obstru??o do fluxo a?reo. O reconhecimento do papel cr?tico da inflama??o no processo tem sido dirigido ao eixo de tratamento para a preven??o ou bloqueio de altera??es inflamat?rias. Com esse prop?sito novos f?rmacos foram estudados e entre eles os inibidores espec?ficos da fosfodiesterase 4 (PDE4) apresentaram resultados promissores devido ao controle dos n?veis de AMPc, que est?o implicados em c?lulas musculares lisas, inflamat?rias e imunes. Este trabalho tem como objetivo sintetizar novos ?cidos (Z) -2-benzamida-3-fenilacr?licos concebidos como inibidores de PDE4 (iPDE4), com base nos farmac?foros presentes no cilomilast e roflumilast, e avaliar a actividade inibit?ria dos compostos sintetizados num modelo enzim?tico te?rico de docking molecular para a PDE4. A s?ntese para a obten??o dos novos ?cidos passa por quatro etapas. Primeiro, uma s?rie de derivados de succinimida, que s?o obtidos a partir da rea??o de um ?cido benz?ico substitu?do com a N hidroxisuccinimida, DCC em THF ? temperatura ambiente durante 20 h (93-79%). Em segundo lugar, os derivados de ?cido hip?rico que foram produzidos a partir da reac??o de intermedi?rios succinim?dicos da etapa anterior com glicina no ambiente b?sico (76- 66%). Em terceiro lugar, a prepara??o de azalactonas seguindo uma metodologia de Erlemmeyer-Ploch onde os derivados de ?cido hip?rico, benzalde?dos substitu?dos, acetato de s?dio reagem a 120?C em anidrido ac?tico (59-49%). Finalmente, a hidr?lise de azalactonas com hidr?xido de s?dio em acetonitrila ? temperatura ambiente levou aos ?cidos desejados (96-92%). Os estudos de acoplamento molecular foram realizados no programa GOLD com o s?tio catal?tico de PDE4D (PDB 1XOR) definido em torno de 10,0 ? da tirosina 159. O redocking foi feito para escolher a melhor base para validar o modelo. Os melhores resultados foram obtidos com a base PLP. As estruturas dos compostos ?cidos (1-7) foram minimizadas usando o software Spartan Pro 14.0 (PM6) e os estudos de acoplamento foram realizados fornecendo as pontua??es de score de energia (72,45 - 78,06). Apesar dos valores de pontua??o elevada indicar uma bom ancoramento, foi feita ainda uma an?lise visual da intera??o entre os ligantes e o bioreceptor. As principais conforma??es revelam as principais interac??es esperadas de inibidores de PDE4: liga??es hidrog?nio dos grupos dimetoxifenila com Gln369, empacotamento ? com Phe372 e interac??es hidrof?licas com o s?tio metal?co. A rota de s?ntese para obten??o do ?cido (Z) -2-benzamido-3-fenilacr?lico foi vi?vel e apresenta bons rendimentos, passando por intermedi?rios de reac??o est?veis e de f?cil armazenamento. Estudos de acoplamento molecular com os produtos finais apresentaram um perfil de inibi??o te?rica "in silico" para PDE4 muito semelhante aos inibidores j? descritos na literatura. Os compostos est?o agora sob avalia??o dos seus perfis inibit?rios de PDE4, para verifica??o de atividade "in vitro"Submitted by Celso Magalhaes (celsomagalhaes@ufrrj.br) on 2022-02-18T15:58:30Z No. of bitstreams: 1 2016 - Pedro Lessa Penetra.pdf: 12069139 bytes, checksum: e329743557d09a3d68da43ad24f5b054 (MD5)Made available in DSpace on 2022-02-18T15:58:30Z (GMT). No. of bitstreams: 1 2016 - Pedro Lessa Penetra.pdf: 12069139 bytes, checksum: e329743557d09a3d68da43ad24f5b054 (MD5) Previous issue date: 2016-07-21CAPES - Coordena??o de Aperfei?oamento de Pessoal de N?vel SuperiorCNPq - Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gicoFAPERJ - Funda??o Carlos Chagas Filho de Amparo ? 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P., WATETER, G., THOMPSON, P. J. Pharmacogenetics of ?2 adrenergic receptor gene polymorphisms, long-acting ?-agonists and asthma. Clin. 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dc.title.por.fl_str_mv S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD
dc.title.alternative.eng.fl_str_mv Synthesis of new (Z)-2-benzamido-3-phenylacrylic acid derivatives planned as Phosphodiesterase 4 Inhibitors for the treatment of asthma and COPD
title S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD
spellingShingle S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD
Penetra, Pedro Lessa
DPOC
Asma
PDE4
inflama??o
?cido-(Z)-2-benzamido-3- fenilacr?lico
COPD
asthma
PDE4
inflammation
acid-(Z)-2-benzamido-3- phenylacrylic
Qu?mica
title_short S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD
title_full S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD
title_fullStr S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD
title_full_unstemmed S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD
title_sort S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD
author Penetra, Pedro Lessa
author_facet Penetra, Pedro Lessa
author_role author
dc.contributor.advisor1.fl_str_mv K?mmerle, Arthur Eugen
dc.contributor.advisor1ID.fl_str_mv 053.978.847-78
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/5598000938584486
dc.contributor.referee1.fl_str_mv K?mmerle, Arthur Eugen
dc.contributor.referee1ID.fl_str_mv 053.978.487-78
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/5598000938584486
dc.contributor.referee2.fl_str_mv Moura, Ricardo Ol?mpio de
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/3707776918049437
dc.contributor.referee3.fl_str_mv Neves, Amanda Porto
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/7460226353493536
dc.contributor.authorID.fl_str_mv 147.155.437-61
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/2576311429133890
dc.contributor.author.fl_str_mv Penetra, Pedro Lessa
contributor_str_mv K?mmerle, Arthur Eugen
K?mmerle, Arthur Eugen
Moura, Ricardo Ol?mpio de
Neves, Amanda Porto
dc.subject.por.fl_str_mv DPOC
Asma
PDE4
inflama??o
?cido-(Z)-2-benzamido-3- fenilacr?lico
topic DPOC
Asma
PDE4
inflama??o
?cido-(Z)-2-benzamido-3- fenilacr?lico
COPD
asthma
PDE4
inflammation
acid-(Z)-2-benzamido-3- phenylacrylic
Qu?mica
dc.subject.eng.fl_str_mv COPD
asthma
PDE4
inflammation
acid-(Z)-2-benzamido-3- phenylacrylic
dc.subject.cnpq.fl_str_mv Qu?mica
description Asthma and Chronic Obstructive Pulmonary Disease (COPD) are chronic inflammatory diseases with varying levels of airflow obstruction. Recognition of the critical role of inflammation in the process has been directed the treatment axis for the prevention or blockage of inflammatory changes. For this purpose new drugs have been studied and among them the specific inhibitors of phosphodiesterase 4 (PDE4) have presented promising results due to the control of cAMP levels, which are implicated in smooth, inflammatory and immune muscle cells. This work aimed to synthesize new (Z)- 2-benzamide-3-phenylacrylic acids designed as PDE4 inhibitors (iPDE4), based on pharmacophores present in cilomilast and roflumilast, and to evaluate the inhibitory activity of the synthesized compounds in a theoretical enzymatic model of PDE4 molecular docking. The synthesis for obtaining the new acids goes through four steps. First, a series of succinimide derivatives, which are obtained from the reaction of a substituted benzoic acid with an N-hydroxysuccinimide, DCC in THF at room temperature for 20 h (93-79%). Second, hippuric acid derivatives were produced from the the reaction of succinimide intermediates of the previous step with glycine in basics environment (76-66%). Third, preparation of azalactones following an Erlemmeyer Ploch methodology where the derivatives of hippuric acid, substituted benzaldehydes, sodium acetate are reacted at 120 ?C in acetic anhydride (59-49%). Finally, the hydrolysis of azalactones with sodium hydroxide in acetonitrile at room temperature led to the desired acids (96-92%). Molecular docking studies were performed in the GOLD program with the catalytic site of PDE4D (PDB 1XOR) defined around 10.0 ? from tyrosine 159. Redocking was done in order to chose the best base and to validate the model. The best results were obtained with the PLP basis. The acid compounds (1-7) were minimized using Spartan Pro 14.0 software (PM6) and the docking studies were done providing the scores (72,45 - 78,06). Despite the high score values it was make a visual analysis of the interaction poses between ligand and bioreceptor. The main conformers showed the main expected interactions of PDE4 inhibitors: hydrogen bonds of the dimethoxyphenyl groups with Gln369, ?-stacking with Phe372 and hydrophilic interactions with the metal site. The synthetic route for obtaining (Z)-2-benzamido-3- phenylacrylic acid was viable and presented good yields, through stable reaction intermediates. Molecular docking studies with the final products presented a theoretical inhibition profile for PDE4 very similar to the inhibitors already described in the literature. The compounds are now under evaluation of theirs PDE4 inhibitory profiles
publishDate 2016
dc.date.issued.fl_str_mv 2016-07-21
dc.date.accessioned.fl_str_mv 2022-02-18T15:58:30Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv PENETRA, Pedro Lessa. S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD. 2016.102 f.. Disserta??o( Mestrado em Qu?mica) - Instituto de Ci?ncias Exatas, Universidade Federal Rural do Rio de Janeiro, Serop?dica, RJ, 2016.
dc.identifier.uri.fl_str_mv https://tede.ufrrj.br/jspui/handle/jspui/5405
identifier_str_mv PENETRA, Pedro Lessa. S?ntese de novos derivados ?cido (Z)-2-benzamido-3-fenilacr?licos planejados como Inibidores da Fosfodiesterase 4 para o tratamento da asma e COPD. 2016.102 f.. Disserta??o( Mestrado em Qu?mica) - Instituto de Ci?ncias Exatas, Universidade Federal Rural do Rio de Janeiro, Serop?dica, RJ, 2016.
url https://tede.ufrrj.br/jspui/handle/jspui/5405
dc.language.iso.fl_str_mv por
language por
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