Identificação e caracterização de Fusarium spp. e Pestalotiopsis spp. associados a Carya illinoinensis no Rio Grande do Sul

Detalhes bibliográficos
Ano de defesa: 2013
Autor(a) principal: Lazarotto, Marília lattes
Orientador(a): Muniz, Marlove Fatima Brião lattes
Banca de defesa: Reiniger, Lia Rejane Silveira lattes, Kulczynski, Stela Maris lattes, Gomes, Cesar Bauer lattes, Golle, Diego Pascoal lattes
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal de Santa Maria
Programa de Pós-Graduação: Programa de Pós-Graduação em Engenharia Florestal
Departamento: Recursos Florestais e Engenharia Florestal
País: BR
Palavras-chave em Português:
ITS
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: http://repositorio.ufsm.br/handle/1/3753
Resumo: Cultivation of Walnut-pecan (Carya illinoinensis [Wangenh.] K. Koch) has intensified in recent years in the state of Rio Grande do Sul. However, the research related to plant pathology has not developed to the same degree, so producing pecan nuts have faced many unknown diseases in the state. The main objective of this study was: a) identify and characterize causal agents of new diseases on Walnut-pecan in Rio Grande do Sul, and as specific objectives: b) to collect and to identify pathogens in different locations in Rio Grande do Sul, c) evaluate the pathogenicity of isolates collected in plantations of Walnut-pecan from different locations in Rio Grande do Sul, d) perform the isolates morphological characterization collected from diseased plants of Walnut-pecan, and e) to identify the isolates species. For this purpose, samples were taken in seven cities in the state for isolating potentially pathogenic fungi which were also collected and analyzed soil samples to characterize the area and georeferencing. Pathogens, Fusarium spp. and Pestalotiopsis spp. which were not yet reported were tested for their pathogenicity. The first genus was tested by inoculation on substrate, and the second by leaf inoculation with spore suspension. The pathogenic isolates were characterized by mycelial growth, sporulation, conidial dimensions, colony pigmentation and formation of specific structures to each genus. The same isolates were also identified by molecular sequencing of the ITS and TEF-1α genes for Fusarium spp. and ITS and β-tubulin genes for Pestalotiopsis spp. Twelve pathogenic isolates of Fusarium spp. and eleven of Pestalotiopsis spp. were identified. The variables used on morphological characterization were able to differentiate the isolates, especially the width of conidia for Fusarium spp. and diameter of the colonies for Pestalotiopsis spp. The sequencing of the ITS regions and TEF-1α to Fusarium spp. confirmed the separation of isolates through morphological characteristics and identified five species: F. chlamydosporum, F. oxysporum, F. equiseti, Giberella fujikuroi species complex and F. graminearum species complex and for Pestalotiopsis spp. sequencing of the ITS regions and β-tubulin could identify some species, such as P. clavisora and P. cocculi, and other isolates remained without precise identification of the species, since the phylogeny of the genus is still poorly known.
id UFSM_e8ac3366e2e1409ca655ff95e36b0dd7
oai_identifier_str oai:repositorio.ufsm.br:1/3753
network_acronym_str UFSM
network_name_str Biblioteca Digital de Teses e Dissertações do UFSM
repository_id_str
spelling 2013-11-142013-11-142013-02-19LAZAROTTO, Marília. Idenfication and characterization of Fusarium spp. and Pestalotiopsis spp. associated to Carya illinoinensis in Rio Grande do Sul. 2013. 156 f. Tese (Doutorado em Recursos Florestais e Engenharia Florestal) - Universidade Federal de Santa Maria, Santa Maria, 2013.http://repositorio.ufsm.br/handle/1/3753Cultivation of Walnut-pecan (Carya illinoinensis [Wangenh.] K. Koch) has intensified in recent years in the state of Rio Grande do Sul. However, the research related to plant pathology has not developed to the same degree, so producing pecan nuts have faced many unknown diseases in the state. The main objective of this study was: a) identify and characterize causal agents of new diseases on Walnut-pecan in Rio Grande do Sul, and as specific objectives: b) to collect and to identify pathogens in different locations in Rio Grande do Sul, c) evaluate the pathogenicity of isolates collected in plantations of Walnut-pecan from different locations in Rio Grande do Sul, d) perform the isolates morphological characterization collected from diseased plants of Walnut-pecan, and e) to identify the isolates species. For this purpose, samples were taken in seven cities in the state for isolating potentially pathogenic fungi which were also collected and analyzed soil samples to characterize the area and georeferencing. Pathogens, Fusarium spp. and Pestalotiopsis spp. which were not yet reported were tested for their pathogenicity. The first genus was tested by inoculation on substrate, and the second by leaf inoculation with spore suspension. The pathogenic isolates were characterized by mycelial growth, sporulation, conidial dimensions, colony pigmentation and formation of specific structures to each genus. The same isolates were also identified by molecular sequencing of the ITS and TEF-1α genes for Fusarium spp. and ITS and β-tubulin genes for Pestalotiopsis spp. Twelve pathogenic isolates of Fusarium spp. and eleven of Pestalotiopsis spp. were identified. The variables used on morphological characterization were able to differentiate the isolates, especially the width of conidia for Fusarium spp. and diameter of the colonies for Pestalotiopsis spp. The sequencing of the ITS regions and TEF-1α to Fusarium spp. confirmed the separation of isolates through morphological characteristics and identified five species: F. chlamydosporum, F. oxysporum, F. equiseti, Giberella fujikuroi species complex and F. graminearum species complex and for Pestalotiopsis spp. sequencing of the ITS regions and β-tubulin could identify some species, such as P. clavisora and P. cocculi, and other isolates remained without precise identification of the species, since the phylogeny of the genus is still poorly known.O cultivo da nogueira-pecan (Carya illinoinensis [Wangenh.] K. Koch) tem se intensificado nos últimos anos no estado do Rio Grande do Sul. Entretanto, as pesquisas relacionadas aos problemas fitossanitários da espécie não se desenvolveram na mesma intensidade, de modo que muitos produtores do estado têm enfrentado enfermidades desconhecidas. Diante disto, o objetivo geral do presente trabalho foi identificar e caracterizar os agentes causais de novas doenças que atacam a nogueira-pecan no Rio Grande do Sul. Como objetivos específicos estabeleceram-se: a) coletar e identificar agentes patogênicos em diferentes localidades no Rio Grande do Sul; b) avaliar a patogenicidade de isolados coletados em plantios de nogueira-pecan de diferentes localidades no Rio Grande do Sul; c) caracterizar morfofisiologicamente os isolados coletados de plantas doentes de nogueira-pecan; e d) identificar, em nível de espécie, os isolados provenientes de plantas doentes de nogueira-pecan. Para tanto, foram realizadas coletas em sete municípios do estado, para isolamento de fungos potencialmente patogênicos. Também foram coletadas e analisadas amostras de solo para caracterização da área e georreferenciamento dos pontos. Os patógenos, ainda não relatados, Fusarium spp. e Pestalotiopsis spp., foram testados quanto a sua patogenicidade. O primeiro foi testado com inoculação em substrato, e o segundo com inoculação foliar por suspensão de esporos. Os isolados patogênicos foram caracterizados morfofisiologicamente através das variáveis crescimento micelial, esporulação, dimensões de conídios, pigmentação das colônias e formação de estruturas específicas de cada gênero. Os mesmos isolados também foram identificados molecularmente através de sequenciamento dos genes ITS e TEF-1α, para Fusarium spp., e ITS e β-tubulina, para Pestalotiopsis spp. Foram identificados doze isolados patogênicos de Fusarium spp. e onze de Pestalotiopsis spp. As variáveis utilizadas na caracterização morfofisiológica foram suficientes na diferenciação dos isolados, especialmente a largura dos conídios, para Fusarium spp. e o diâmetro das colônias, para Pestalotiopsis spp. O sequenciamento das regiões ITS e TEF-1α, para Fusarium spp., confirmou a separação dos isolados por meio das características morfofisiológicas e identificou cinco espécies, sendo elas F. chlamydosporum, F. oxysporum, F. equiseti, Giberella fujikuroi species complex e F. graminearum species complex. Para Pestalotiopsis spp., o sequenciamento das regiões ITS e β-tubulina permitiu que se identificassem algumas espécies, como é o caso de P. clavisora e P. cocculi. Outros isolados permaneceram sem identificação precisa da espécie, já que a filogenia do gênero ainda é pouco conhecida.Coordenação de Aperfeiçoamento de Pessoal de Nível Superiorapplication/pdfporUniversidade Federal de Santa MariaPrograma de Pós-Graduação em Engenharia FlorestalUFSMBRRecursos Florestais e Engenharia FlorestalPatogenicidadeAracteres morfológicosITSTEF-1αβ-tubulinaPathogenicityMorphological charactersβ-tubulinCNPQ::CIENCIAS AGRARIAS::RECURSOS FLORESTAIS E ENGENHARIA FLORESTALIdentificação e caracterização de Fusarium spp. e Pestalotiopsis spp. associados a Carya illinoinensis no Rio Grande do SulIdenfication and characterization of Fusarium spp. and Pestalotiopsis spp. associated to Carya illinoinensis in Rio Grande do Sulinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisMuniz, Marlove Fatima Briãohttp://lattes.cnpq.br/3148312031889388Reiniger, Lia Rejane Silveirahttp://lattes.cnpq.br/5739294882585391Kulczynski, Stela Marishttp://lattes.cnpq.br/0604511258822899Gomes, Cesar Bauerhttp://lattes.cnpq.br/3411662870994341Golle, Diego Pascoalhttp://lattes.cnpq.br/4193267565056836http://lattes.cnpq.br/1310246210091310Lazarotto, Marília500200000003400500300500300300500e8de5014-a63f-4739-8254-6b23c08bcd593a371fb3-ddab-4c4a-9c41-befb0307d45273eee66e-f2d5-4cfa-a3c6-ec782eb7e5e4c8806d4c-9809-4c96-9601-c3f950f43a70d8490c33-2284-4be7-8179-597c7deb89c39532f06b-366a-46cd-9752-9cd74a9a9225info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações do UFSMinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSMORIGINALLAZAROTTO, MARILIA.pdfapplication/pdf2631354http://repositorio.ufsm.br/bitstream/1/3753/1/LAZAROTTO%2c%20MARILIA.pdf7726be4e81ba77cb3b30884a013ba284MD51TEXTLAZAROTTO, MARILIA.pdf.txtLAZAROTTO, MARILIA.pdf.txtExtracted texttext/plain266936http://repositorio.ufsm.br/bitstream/1/3753/2/LAZAROTTO%2c%20MARILIA.pdf.txt061e9dafeedf31fe7214c51e1cf9151bMD52THUMBNAILLAZAROTTO, MARILIA.pdf.jpgLAZAROTTO, MARILIA.pdf.jpgIM Thumbnailimage/jpeg4946http://repositorio.ufsm.br/bitstream/1/3753/3/LAZAROTTO%2c%20MARILIA.pdf.jpg170ef2d0a53b7b76c2f8c92e8bb079a4MD531/37532022-07-12 10:38:38.16oai:repositorio.ufsm.br:1/3753Biblioteca Digital de Teses e Dissertaçõeshttps://repositorio.ufsm.br/ONGhttps://repositorio.ufsm.br/oai/requestatendimento.sib@ufsm.br||tedebc@gmail.comopendoar:2022-07-12T13:38:38Biblioteca Digital de Teses e Dissertações do UFSM - Universidade Federal de Santa Maria (UFSM)false
dc.title.por.fl_str_mv Identificação e caracterização de Fusarium spp. e Pestalotiopsis spp. associados a Carya illinoinensis no Rio Grande do Sul
dc.title.alternative.eng.fl_str_mv Idenfication and characterization of Fusarium spp. and Pestalotiopsis spp. associated to Carya illinoinensis in Rio Grande do Sul
title Identificação e caracterização de Fusarium spp. e Pestalotiopsis spp. associados a Carya illinoinensis no Rio Grande do Sul
spellingShingle Identificação e caracterização de Fusarium spp. e Pestalotiopsis spp. associados a Carya illinoinensis no Rio Grande do Sul
Lazarotto, Marília
Patogenicidade
Aracteres morfológicos
ITS
TEF-1α
β-tubulina
Pathogenicity
Morphological characters
β-tubulin
CNPQ::CIENCIAS AGRARIAS::RECURSOS FLORESTAIS E ENGENHARIA FLORESTAL
title_short Identificação e caracterização de Fusarium spp. e Pestalotiopsis spp. associados a Carya illinoinensis no Rio Grande do Sul
title_full Identificação e caracterização de Fusarium spp. e Pestalotiopsis spp. associados a Carya illinoinensis no Rio Grande do Sul
title_fullStr Identificação e caracterização de Fusarium spp. e Pestalotiopsis spp. associados a Carya illinoinensis no Rio Grande do Sul
title_full_unstemmed Identificação e caracterização de Fusarium spp. e Pestalotiopsis spp. associados a Carya illinoinensis no Rio Grande do Sul
title_sort Identificação e caracterização de Fusarium spp. e Pestalotiopsis spp. associados a Carya illinoinensis no Rio Grande do Sul
author Lazarotto, Marília
author_facet Lazarotto, Marília
author_role author
dc.contributor.advisor1.fl_str_mv Muniz, Marlove Fatima Brião
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/3148312031889388
dc.contributor.referee1.fl_str_mv Reiniger, Lia Rejane Silveira
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/5739294882585391
dc.contributor.referee2.fl_str_mv Kulczynski, Stela Maris
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/0604511258822899
dc.contributor.referee3.fl_str_mv Gomes, Cesar Bauer
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/3411662870994341
dc.contributor.referee4.fl_str_mv Golle, Diego Pascoal
dc.contributor.referee4Lattes.fl_str_mv http://lattes.cnpq.br/4193267565056836
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/1310246210091310
dc.contributor.author.fl_str_mv Lazarotto, Marília
contributor_str_mv Muniz, Marlove Fatima Brião
Reiniger, Lia Rejane Silveira
Kulczynski, Stela Maris
Gomes, Cesar Bauer
Golle, Diego Pascoal
dc.subject.por.fl_str_mv Patogenicidade
Aracteres morfológicos
ITS
TEF-1α
β-tubulina
topic Patogenicidade
Aracteres morfológicos
ITS
TEF-1α
β-tubulina
Pathogenicity
Morphological characters
β-tubulin
CNPQ::CIENCIAS AGRARIAS::RECURSOS FLORESTAIS E ENGENHARIA FLORESTAL
dc.subject.eng.fl_str_mv Pathogenicity
Morphological characters
β-tubulin
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS AGRARIAS::RECURSOS FLORESTAIS E ENGENHARIA FLORESTAL
description Cultivation of Walnut-pecan (Carya illinoinensis [Wangenh.] K. Koch) has intensified in recent years in the state of Rio Grande do Sul. However, the research related to plant pathology has not developed to the same degree, so producing pecan nuts have faced many unknown diseases in the state. The main objective of this study was: a) identify and characterize causal agents of new diseases on Walnut-pecan in Rio Grande do Sul, and as specific objectives: b) to collect and to identify pathogens in different locations in Rio Grande do Sul, c) evaluate the pathogenicity of isolates collected in plantations of Walnut-pecan from different locations in Rio Grande do Sul, d) perform the isolates morphological characterization collected from diseased plants of Walnut-pecan, and e) to identify the isolates species. For this purpose, samples were taken in seven cities in the state for isolating potentially pathogenic fungi which were also collected and analyzed soil samples to characterize the area and georeferencing. Pathogens, Fusarium spp. and Pestalotiopsis spp. which were not yet reported were tested for their pathogenicity. The first genus was tested by inoculation on substrate, and the second by leaf inoculation with spore suspension. The pathogenic isolates were characterized by mycelial growth, sporulation, conidial dimensions, colony pigmentation and formation of specific structures to each genus. The same isolates were also identified by molecular sequencing of the ITS and TEF-1α genes for Fusarium spp. and ITS and β-tubulin genes for Pestalotiopsis spp. Twelve pathogenic isolates of Fusarium spp. and eleven of Pestalotiopsis spp. were identified. The variables used on morphological characterization were able to differentiate the isolates, especially the width of conidia for Fusarium spp. and diameter of the colonies for Pestalotiopsis spp. The sequencing of the ITS regions and TEF-1α to Fusarium spp. confirmed the separation of isolates through morphological characteristics and identified five species: F. chlamydosporum, F. oxysporum, F. equiseti, Giberella fujikuroi species complex and F. graminearum species complex and for Pestalotiopsis spp. sequencing of the ITS regions and β-tubulin could identify some species, such as P. clavisora and P. cocculi, and other isolates remained without precise identification of the species, since the phylogeny of the genus is still poorly known.
publishDate 2013
dc.date.accessioned.fl_str_mv 2013-11-14
dc.date.available.fl_str_mv 2013-11-14
dc.date.issued.fl_str_mv 2013-02-19
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv LAZAROTTO, Marília. Idenfication and characterization of Fusarium spp. and Pestalotiopsis spp. associated to Carya illinoinensis in Rio Grande do Sul. 2013. 156 f. Tese (Doutorado em Recursos Florestais e Engenharia Florestal) - Universidade Federal de Santa Maria, Santa Maria, 2013.
dc.identifier.uri.fl_str_mv http://repositorio.ufsm.br/handle/1/3753
identifier_str_mv LAZAROTTO, Marília. Idenfication and characterization of Fusarium spp. and Pestalotiopsis spp. associated to Carya illinoinensis in Rio Grande do Sul. 2013. 156 f. Tese (Doutorado em Recursos Florestais e Engenharia Florestal) - Universidade Federal de Santa Maria, Santa Maria, 2013.
url http://repositorio.ufsm.br/handle/1/3753
dc.language.iso.fl_str_mv por
language por
dc.relation.cnpq.fl_str_mv 500200000003
dc.relation.confidence.fl_str_mv 400
500
300
500
300
300
500
dc.relation.authority.fl_str_mv e8de5014-a63f-4739-8254-6b23c08bcd59
3a371fb3-ddab-4c4a-9c41-befb0307d452
73eee66e-f2d5-4cfa-a3c6-ec782eb7e5e4
c8806d4c-9809-4c96-9601-c3f950f43a70
d8490c33-2284-4be7-8179-597c7deb89c3
9532f06b-366a-46cd-9752-9cd74a9a9225
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Engenharia Florestal
dc.publisher.initials.fl_str_mv UFSM
dc.publisher.country.fl_str_mv BR
dc.publisher.department.fl_str_mv Recursos Florestais e Engenharia Florestal
publisher.none.fl_str_mv Universidade Federal de Santa Maria
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações do UFSM
instname:Universidade Federal de Santa Maria (UFSM)
instacron:UFSM
instname_str Universidade Federal de Santa Maria (UFSM)
instacron_str UFSM
institution UFSM
reponame_str Biblioteca Digital de Teses e Dissertações do UFSM
collection Biblioteca Digital de Teses e Dissertações do UFSM
bitstream.url.fl_str_mv http://repositorio.ufsm.br/bitstream/1/3753/1/LAZAROTTO%2c%20MARILIA.pdf
http://repositorio.ufsm.br/bitstream/1/3753/2/LAZAROTTO%2c%20MARILIA.pdf.txt
http://repositorio.ufsm.br/bitstream/1/3753/3/LAZAROTTO%2c%20MARILIA.pdf.jpg
bitstream.checksum.fl_str_mv 7726be4e81ba77cb3b30884a013ba284
061e9dafeedf31fe7214c51e1cf9151b
170ef2d0a53b7b76c2f8c92e8bb079a4
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações do UFSM - Universidade Federal de Santa Maria (UFSM)
repository.mail.fl_str_mv atendimento.sib@ufsm.br||tedebc@gmail.com
_version_ 1793240165125193728