Herança e mapeamento de QTLs da resistência do Híbrido de Timor à ferrugem do cafeeiro

Detalhes bibliográficos
Ano de defesa: 2008
Autor(a) principal: Capucho, Alexandre Sandri
Orientador(a): Zambolim, Laércio lattes
Banca de defesa: Pereira, Antonio Alves lattes, Sakiyama, Ney Sussumu lattes
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal de Viçosa
Programa de Pós-Graduação: Mestrado em Fitopatologia
Departamento: Etiologia; Epidemiologia; Controle
País: BR
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: http://locus.ufv.br/handle/123456789/4361
Resumo: The objectives of this work were to study the resistance inheritance of the Híbrido Timor UFV 443-3 to Hemileia vastatrix and identify QTLs associated with resistance to coffee leaf rust. To study the inheritance we used a population of 246 individuals, produced from the controlled self-pollinated F1 H 511-1, 115 susceptible backcrossing (BCS) plants, and 87 resistant backcrossing (BCR) plants, originated from the crossing between F1 with Catuaí amarelo UFV 2148-57 and Híbrido de Timor UFV 443-3, respectively. These populations were inoculated with the race II, and a noncharacterized field isolate, designated pathotype 001, both from a single pustule-isolate of H. vastatrix. For both pathotypes, the Catuaí amarelo UFV 2148-57 was susceptible, while the Híbrido de Timor, the F1, and the BCR plants were resistant. The F2 plants inoculated with the race II showed two goodness of fit by the chi-square test, 15:1 (P=24.92%) and 61:3 (P=87.27%). The resistance inheritance was confirmed by the inoculation of BCs plants which segregated in a rate of 3:1 (P=17.83%), expected for the two genes, whereas the hypothesis of segregation 7:1, expected for three genes, was rejected. These results demonstrate that two independent dominant genes are responsible for the resistance of the Híbrido de Timor 443-3 to the race II of H. vastatrix. Similar results were observed with the pathotype 001 showing a segregation of 15:1 (P=92.13%) in the F2, and 3:1 (P=78.78%) in the BCs. These data indicate that two independent dominant genes, also, control the resistance of the Híbrido de Timor to this pathotype. To identify QTLs associated with the resistance of the Híbrido de Timor UFV 443-3 to coffee leaf rust we tested 286 molecular markers (282 SSR and 4 RAPD) in the parental genotypes. Those polymorphic markers (21 SSR and 4 RAPD) were used to screening the 246 F2 plants and to construct the linkage map. Among the 25 analyzed markers, two did not match to any of the six linkage groups formed by the 23 remaining markers, covering 277.90cM of the genome. Three QTLs were identified, QTLHv1, QTLHv2 and QTLHv3, that explain, 5.94%, 5.52% and 15.92% of the phenotypic variation respectively. The LOD score and the recombination frequency between the marker and respective QTLs were 3.69 and 14cM to the QTLHv1, 3.18 and 0.5cM to the QTLHv2, and 10.33 and 22cM to the QTLHv3. This is the first report of SSR markers in the identification of QTLs associated to the coffee tree resistance to H. vastatrix. These QTLs could be used in the assisted selection for introgression of genes for resistance from the Híbrido de Timor UFV 443-3 to coffee leaf rust into commercial genotypes.
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spelling Capucho, Alexandre Sandrihttp://lattes.cnpq.br/0136907266339292Caixeta, Eveline Teixeirahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4728636Z7Zambolim, Eunize Macielhttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4783380J6Zambolim, Laérciohttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4787254T6Pereira, Antonio Alveshttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4780579Y1Sakiyama, Ney Sussumuhttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4781483H82015-03-26T13:37:37Z2008-07-172015-03-26T13:37:37Z2008-02-19CAPUCHO, Alexandre Sandri. Inheritance and mapping of QTLs for resistance of Híbrido de Timor to the coffee leaf rust. 2008. 74 f. Dissertação (Mestrado em Etiologia; Epidemiologia; Controle) - Universidade Federal de Viçosa, Viçosa, 2008.http://locus.ufv.br/handle/123456789/4361The objectives of this work were to study the resistance inheritance of the Híbrido Timor UFV 443-3 to Hemileia vastatrix and identify QTLs associated with resistance to coffee leaf rust. To study the inheritance we used a population of 246 individuals, produced from the controlled self-pollinated F1 H 511-1, 115 susceptible backcrossing (BCS) plants, and 87 resistant backcrossing (BCR) plants, originated from the crossing between F1 with Catuaí amarelo UFV 2148-57 and Híbrido de Timor UFV 443-3, respectively. These populations were inoculated with the race II, and a noncharacterized field isolate, designated pathotype 001, both from a single pustule-isolate of H. vastatrix. For both pathotypes, the Catuaí amarelo UFV 2148-57 was susceptible, while the Híbrido de Timor, the F1, and the BCR plants were resistant. The F2 plants inoculated with the race II showed two goodness of fit by the chi-square test, 15:1 (P=24.92%) and 61:3 (P=87.27%). The resistance inheritance was confirmed by the inoculation of BCs plants which segregated in a rate of 3:1 (P=17.83%), expected for the two genes, whereas the hypothesis of segregation 7:1, expected for three genes, was rejected. These results demonstrate that two independent dominant genes are responsible for the resistance of the Híbrido de Timor 443-3 to the race II of H. vastatrix. Similar results were observed with the pathotype 001 showing a segregation of 15:1 (P=92.13%) in the F2, and 3:1 (P=78.78%) in the BCs. These data indicate that two independent dominant genes, also, control the resistance of the Híbrido de Timor to this pathotype. To identify QTLs associated with the resistance of the Híbrido de Timor UFV 443-3 to coffee leaf rust we tested 286 molecular markers (282 SSR and 4 RAPD) in the parental genotypes. Those polymorphic markers (21 SSR and 4 RAPD) were used to screening the 246 F2 plants and to construct the linkage map. Among the 25 analyzed markers, two did not match to any of the six linkage groups formed by the 23 remaining markers, covering 277.90cM of the genome. Three QTLs were identified, QTLHv1, QTLHv2 and QTLHv3, that explain, 5.94%, 5.52% and 15.92% of the phenotypic variation respectively. The LOD score and the recombination frequency between the marker and respective QTLs were 3.69 and 14cM to the QTLHv1, 3.18 and 0.5cM to the QTLHv2, and 10.33 and 22cM to the QTLHv3. This is the first report of SSR markers in the identification of QTLs associated to the coffee tree resistance to H. vastatrix. These QTLs could be used in the assisted selection for introgression of genes for resistance from the Híbrido de Timor UFV 443-3 to coffee leaf rust into commercial genotypes.Este trabalho teve como objetivos estudar a herança da resistência do Híbrido de Timor UFV 443-3 a Hemileia vastatrix e identificar QTLs associados à resistência à ferrugem do cafeeiro. Para o estudo da herança, foram utilizadas 246 plantas da população F2, originadas da autofecundação controlada do F1 H 511-1, 115 plantas do retrocruzamento suscetível (RCS) e 87 do retrocruzamento resistente (RCR), derivados de cruzamentos do F1 com o genótipo Catuaí Amarelo IAC 64 (UFV 2148-57) e o Híbrido de Timor UFV 443-3, respectivamente. Essas plantas foram inoculadas com a raça II de H. vastatrix e um isolado coletado de Coffea arabica Oeiras , de raça desconhecida, denominado patótipo 001, ambos isolados de lesões monopustulares. Para os dois patótipos, o Catuaí Amarelo UFV 2148-57 foi suscetível, enquanto que o Híbrido de Timor UFV 443-3, a F1 e as plantas do RCR foram resistentes. As plantas F2, quando inoculadas com a raça II, apresentaram duas segregações significativas pelo teste Qui-quadrado, 15:1 (P=24,92%) e 61:3 (P=87,27%). A herança da resistência foi confirmada pela inoculação das plantas do RCS que segregaram na proporção de 3:1 (P=17,83%), esperado para os dois genes, enquanto que a segregação 7:1, esperada para três genes, foi rejeitada. Estes dados sugerem que dois genes dominantes e independentes conferem a resistência desse Híbrido de Timor à raça II de H. vastatrix. Resultados semelhantes foram obtidos com o patótipo 001, onde foi observada segregação de 15:1 (P=92,13%) na F2 e de 3:1 (P=78,78%) no RCS, demonstrando, também, que dois genes dominantes e independentes controlam a resistência do Híbrido de Timor a esse outro patótipo. Para a identificação de QTLs associados à resistência do Híbrido de Timor UFV 443-3 a H. vastatrix, 286 marcadores moleculares (282 SSR e 4 RAPD) foram analisados nos parentais. Os marcadores polimórficos (21 SSR e 4 RAPD) foram utilizados para amplificar o DNA das 246 plantas F2 e construir o mapa genético. Dos 25 marcadores analisados, dois não se ligaram a nenhum dos seis grupos de ligação formados pelos 23 marcadores restantes, que cobriram 277,90 cM do genoma. Três QTLs foram identificados e designados como QTLHv1, QTLHv2 e QTLHv3, que explicaram, respectivamente, 5,94%, 5,52% e 15,92% da variação fenotípica. Os valores de LOD e distância entre as marcas e respectivos QTLs foram de 3,69 e 14 cM para o QTLHv1, 3,18 e 0,5 cM para o QTLHv2 e 10,33 e 22 cM para o QTLHv3. Este é o primeiro relato da utilização de marcadores SSR na identificação de QTLs associados à resistência do cafeeiro a H. vastatrix. Esses QTLs poderão ser utilizados na seleção assistida para a introgressão de genes de resistência do Híbrido de Timor UFV 443-3 à ferrugem nos genótipos comerciais.Conselho Nacional de Desenvolvimento Científico e Tecnológicoapplication/pdfporUniversidade Federal de ViçosaMestrado em FitopatologiaUFVBREtiologia; Epidemiologia; ControleHemileia vastatrixResistênciaMicrossatélitesHemileia vastatrixResistanceMicrosatellitesCNPQ::CIENCIAS AGRARIAS::AGRONOMIA::FITOSSANIDADE::FITOPATOLOGIAHerança e mapeamento de QTLs da resistência do Híbrido de Timor à ferrugem do cafeeiroInheritance and mapping of QTLs for resistance of Híbrido de Timor to the coffee leaf rustinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALtexto completo.pdfapplication/pdf467886https://locus.ufv.br//bitstream/123456789/4361/1/texto%20completo.pdf051d33e9fe8f41b61beb20c091a64c17MD51TEXTtexto completo.pdf.txttexto completo.pdf.txtExtracted texttext/plain151500https://locus.ufv.br//bitstream/123456789/4361/2/texto%20completo.pdf.txte5744e6c08e818295e1f99fc56833381MD52THUMBNAILtexto completo.pdf.jpgtexto completo.pdf.jpgIM Thumbnailimage/jpeg3666https://locus.ufv.br//bitstream/123456789/4361/3/texto%20completo.pdf.jpg9fca2a1ef2d023674c2d914a7229a90dMD53123456789/43612016-04-10 23:08:56.891oai:locus.ufv.br:123456789/4361Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452016-04-11T02:08:56LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false
dc.title.por.fl_str_mv Herança e mapeamento de QTLs da resistência do Híbrido de Timor à ferrugem do cafeeiro
dc.title.alternative.eng.fl_str_mv Inheritance and mapping of QTLs for resistance of Híbrido de Timor to the coffee leaf rust
title Herança e mapeamento de QTLs da resistência do Híbrido de Timor à ferrugem do cafeeiro
spellingShingle Herança e mapeamento de QTLs da resistência do Híbrido de Timor à ferrugem do cafeeiro
Capucho, Alexandre Sandri
Hemileia vastatrix
Resistência
Microssatélites
Hemileia vastatrix
Resistance
Microsatellites
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::FITOSSANIDADE::FITOPATOLOGIA
title_short Herança e mapeamento de QTLs da resistência do Híbrido de Timor à ferrugem do cafeeiro
title_full Herança e mapeamento de QTLs da resistência do Híbrido de Timor à ferrugem do cafeeiro
title_fullStr Herança e mapeamento de QTLs da resistência do Híbrido de Timor à ferrugem do cafeeiro
title_full_unstemmed Herança e mapeamento de QTLs da resistência do Híbrido de Timor à ferrugem do cafeeiro
title_sort Herança e mapeamento de QTLs da resistência do Híbrido de Timor à ferrugem do cafeeiro
author Capucho, Alexandre Sandri
author_facet Capucho, Alexandre Sandri
author_role author
dc.contributor.authorLattes.por.fl_str_mv http://lattes.cnpq.br/0136907266339292
dc.contributor.author.fl_str_mv Capucho, Alexandre Sandri
dc.contributor.advisor-co1.fl_str_mv Caixeta, Eveline Teixeira
dc.contributor.advisor-co1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4728636Z7
dc.contributor.advisor-co2.fl_str_mv Zambolim, Eunize Maciel
dc.contributor.advisor-co2Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4783380J6
dc.contributor.advisor1.fl_str_mv Zambolim, Laércio
dc.contributor.advisor1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4787254T6
dc.contributor.referee1.fl_str_mv Pereira, Antonio Alves
dc.contributor.referee1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4780579Y1
dc.contributor.referee2.fl_str_mv Sakiyama, Ney Sussumu
dc.contributor.referee2Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4781483H8
contributor_str_mv Caixeta, Eveline Teixeira
Zambolim, Eunize Maciel
Zambolim, Laércio
Pereira, Antonio Alves
Sakiyama, Ney Sussumu
dc.subject.por.fl_str_mv Hemileia vastatrix
Resistência
Microssatélites
topic Hemileia vastatrix
Resistência
Microssatélites
Hemileia vastatrix
Resistance
Microsatellites
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::FITOSSANIDADE::FITOPATOLOGIA
dc.subject.eng.fl_str_mv Hemileia vastatrix
Resistance
Microsatellites
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::FITOSSANIDADE::FITOPATOLOGIA
description The objectives of this work were to study the resistance inheritance of the Híbrido Timor UFV 443-3 to Hemileia vastatrix and identify QTLs associated with resistance to coffee leaf rust. To study the inheritance we used a population of 246 individuals, produced from the controlled self-pollinated F1 H 511-1, 115 susceptible backcrossing (BCS) plants, and 87 resistant backcrossing (BCR) plants, originated from the crossing between F1 with Catuaí amarelo UFV 2148-57 and Híbrido de Timor UFV 443-3, respectively. These populations were inoculated with the race II, and a noncharacterized field isolate, designated pathotype 001, both from a single pustule-isolate of H. vastatrix. For both pathotypes, the Catuaí amarelo UFV 2148-57 was susceptible, while the Híbrido de Timor, the F1, and the BCR plants were resistant. The F2 plants inoculated with the race II showed two goodness of fit by the chi-square test, 15:1 (P=24.92%) and 61:3 (P=87.27%). The resistance inheritance was confirmed by the inoculation of BCs plants which segregated in a rate of 3:1 (P=17.83%), expected for the two genes, whereas the hypothesis of segregation 7:1, expected for three genes, was rejected. These results demonstrate that two independent dominant genes are responsible for the resistance of the Híbrido de Timor 443-3 to the race II of H. vastatrix. Similar results were observed with the pathotype 001 showing a segregation of 15:1 (P=92.13%) in the F2, and 3:1 (P=78.78%) in the BCs. These data indicate that two independent dominant genes, also, control the resistance of the Híbrido de Timor to this pathotype. To identify QTLs associated with the resistance of the Híbrido de Timor UFV 443-3 to coffee leaf rust we tested 286 molecular markers (282 SSR and 4 RAPD) in the parental genotypes. Those polymorphic markers (21 SSR and 4 RAPD) were used to screening the 246 F2 plants and to construct the linkage map. Among the 25 analyzed markers, two did not match to any of the six linkage groups formed by the 23 remaining markers, covering 277.90cM of the genome. Three QTLs were identified, QTLHv1, QTLHv2 and QTLHv3, that explain, 5.94%, 5.52% and 15.92% of the phenotypic variation respectively. The LOD score and the recombination frequency between the marker and respective QTLs were 3.69 and 14cM to the QTLHv1, 3.18 and 0.5cM to the QTLHv2, and 10.33 and 22cM to the QTLHv3. This is the first report of SSR markers in the identification of QTLs associated to the coffee tree resistance to H. vastatrix. These QTLs could be used in the assisted selection for introgression of genes for resistance from the Híbrido de Timor UFV 443-3 to coffee leaf rust into commercial genotypes.
publishDate 2008
dc.date.available.fl_str_mv 2008-07-17
2015-03-26T13:37:37Z
dc.date.issued.fl_str_mv 2008-02-19
dc.date.accessioned.fl_str_mv 2015-03-26T13:37:37Z
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dc.identifier.citation.fl_str_mv CAPUCHO, Alexandre Sandri. Inheritance and mapping of QTLs for resistance of Híbrido de Timor to the coffee leaf rust. 2008. 74 f. Dissertação (Mestrado em Etiologia; Epidemiologia; Controle) - Universidade Federal de Viçosa, Viçosa, 2008.
dc.identifier.uri.fl_str_mv http://locus.ufv.br/handle/123456789/4361
identifier_str_mv CAPUCHO, Alexandre Sandri. Inheritance and mapping of QTLs for resistance of Híbrido de Timor to the coffee leaf rust. 2008. 74 f. Dissertação (Mestrado em Etiologia; Epidemiologia; Controle) - Universidade Federal de Viçosa, Viçosa, 2008.
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dc.publisher.department.fl_str_mv Etiologia; Epidemiologia; Controle
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