Caracterização fenotípica e molecular da resistência do cafeeiro Híbrido de Timor a Hemileia vastatrix

Detalhes bibliográficos
Ano de defesa: 2010
Autor(a) principal: Pestana, Kátia Nogueira
Orientador(a): Sakiyama, Ney Sussumu lattes
Banca de defesa: Cruz, Cosme Damião lattes, Zambolim, Laércio lattes
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal de Viçosa
Programa de Pós-Graduação: Mestrado em Fitotecnia
Departamento: Plantas daninhas, Alelopatia, Herbicidas e Resíduos; Fisiologia de culturas; Manejo pós-colheita de
País: BR
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: http://locus.ufv.br/handle/123456789/4538
Resumo: In order to support the breeding programs coffee that to aim to obtain cultivars resistant to rust (Hemileia vastatrix), this work aimed to study the resistance inheritance of Híbrido de Timor UFV 443-03 and identify molecular markers linked characterized genes. To study the inheritance were evaluated three populations originated from cross the Híbrido de Timor UFV 443-03 resistant parent and Catuaí Amarelo (UFV 2148-57) susceptible cultivar. These plants analyzed, 243 correspond to an F2 population of 114 susceptible backcrossing (BCs) and 87 resistant backcrossing (BCr). Inoculation was performed with a spore suspension (2mg/mL) isolated from the Race I of H. vastatrix in leaf discs, with three replicates for the F2 and RCs, and two for RCr. Plants of the Catuaí Amarelo UFV 2148-57 were susceptible in all inoculations, while the Híbrido de Timor UFV 443-03, the plant F1 and the BCr plants were resistant. Segregation analysis of F2 populations obtained two significant cases, the resistance of a coffee Híbrido de Timor UFV 443-03 the H. vastatrix was governed by two independent and dominant genes (15:1, P = 63.10) and the other three genes is conferred by two dominant and one recessive (61:3, P = 8.87). Plants of the BCs were used to confirm the segregation patterns, which segregated in a rate of 3:1 (P = 74.56), expected segregation for two and three genes. This result demonstrate that the resistance of the Híbrido de Timor is conditioned by two dominant independent genes or three independent genes (two dominant and one recessive). As was found oligogenic inheritance (two or three genes), for confirmation and identification of molecular markers linked to genes, they were treated as QTL, and then located in link genetic map. For this, subjects in the F2 population were analyzed with a total of 110 molecular markers. As 16 markers showed distortion of Mendelian segregation expected rate, the map was constructed with 94 markers (62 AFLP, 28 SSR and 4 RAPD). Whereas a LOD score minimum of three and of 40% recombination maximum, the markers were grouped into 11 linkage groups covering a distance 964.31 cM of the genome, with 13 markers not in any of the linkage groups formed. The longest interval between two markers was 32.1 cM and 68.57% of the markers did not exceed 20 cM. The characterization and identification of QTLs were performed by simple mark and simple interval methods. Methodology of the simple mark was possible to identify markers five associated with QTLs by the methods of ANOVA, regression and maximum likelihood. These QTLs were confirmed by simple interval methodology by means of regression and maximum likelihood. Two QTLs were identified in a 2 linkage group the 0 cM marker 21a, explaining 9.6% of the phenotypic variation. The other was located in 3 linkage group to 13 cM marker 43a, explaining 9.3% of the phenotypic variation. These two QTLs confirm the number and position in the coffee resistance Híbrido de Timor UFV 443-03 H. vastatrix is governed by two independent and dominant genes, thus demonstrating the importance of genomics to identify them. It should be noted that the information obtained in this study are unique to coffee, which may be useful in breeding programs based on assisted selection and positional cloning of the gene for rust resistance. So, should provide support for future breeding populations to obtain more productive and resistance.
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spelling Pestana, Kátia Nogueirahttp://lattes.cnpq.br/5642596758984532Caixeta, Eveline Teixeirahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4728636Z7Zambolim, Eunize Macielhttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4783380J6Sakiyama, Ney Sussumuhttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4781483H8Cruz, Cosme Damiãohttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4788274A6Zambolim, Laérciohttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4787254T62015-03-26T13:39:39Z2013-10-282015-03-26T13:39:39Z2010-07-16PESTANA, Kátia Nogueira. Phenotypic and molecular characterization of the resistance of coffee Híbrido de Timor of the Hemileia vastatrix. 2010. 72 f. Dissertação (Mestrado em Plantas daninhas, Alelopatia, Herbicidas e Resíduos; Fisiologia de culturas; Manejo pós-colheita de) - Universidade Federal de Viçosa, Viçosa, 2010.http://locus.ufv.br/handle/123456789/4538In order to support the breeding programs coffee that to aim to obtain cultivars resistant to rust (Hemileia vastatrix), this work aimed to study the resistance inheritance of Híbrido de Timor UFV 443-03 and identify molecular markers linked characterized genes. To study the inheritance were evaluated three populations originated from cross the Híbrido de Timor UFV 443-03 resistant parent and Catuaí Amarelo (UFV 2148-57) susceptible cultivar. These plants analyzed, 243 correspond to an F2 population of 114 susceptible backcrossing (BCs) and 87 resistant backcrossing (BCr). Inoculation was performed with a spore suspension (2mg/mL) isolated from the Race I of H. vastatrix in leaf discs, with three replicates for the F2 and RCs, and two for RCr. Plants of the Catuaí Amarelo UFV 2148-57 were susceptible in all inoculations, while the Híbrido de Timor UFV 443-03, the plant F1 and the BCr plants were resistant. Segregation analysis of F2 populations obtained two significant cases, the resistance of a coffee Híbrido de Timor UFV 443-03 the H. vastatrix was governed by two independent and dominant genes (15:1, P = 63.10) and the other three genes is conferred by two dominant and one recessive (61:3, P = 8.87). Plants of the BCs were used to confirm the segregation patterns, which segregated in a rate of 3:1 (P = 74.56), expected segregation for two and three genes. This result demonstrate that the resistance of the Híbrido de Timor is conditioned by two dominant independent genes or three independent genes (two dominant and one recessive). As was found oligogenic inheritance (two or three genes), for confirmation and identification of molecular markers linked to genes, they were treated as QTL, and then located in link genetic map. For this, subjects in the F2 population were analyzed with a total of 110 molecular markers. As 16 markers showed distortion of Mendelian segregation expected rate, the map was constructed with 94 markers (62 AFLP, 28 SSR and 4 RAPD). Whereas a LOD score minimum of three and of 40% recombination maximum, the markers were grouped into 11 linkage groups covering a distance 964.31 cM of the genome, with 13 markers not in any of the linkage groups formed. The longest interval between two markers was 32.1 cM and 68.57% of the markers did not exceed 20 cM. The characterization and identification of QTLs were performed by simple mark and simple interval methods. Methodology of the simple mark was possible to identify markers five associated with QTLs by the methods of ANOVA, regression and maximum likelihood. These QTLs were confirmed by simple interval methodology by means of regression and maximum likelihood. Two QTLs were identified in a 2 linkage group the 0 cM marker 21a, explaining 9.6% of the phenotypic variation. The other was located in 3 linkage group to 13 cM marker 43a, explaining 9.3% of the phenotypic variation. These two QTLs confirm the number and position in the coffee resistance Híbrido de Timor UFV 443-03 H. vastatrix is governed by two independent and dominant genes, thus demonstrating the importance of genomics to identify them. It should be noted that the information obtained in this study are unique to coffee, which may be useful in breeding programs based on assisted selection and positional cloning of the gene for rust resistance. So, should provide support for future breeding populations to obtain more productive and resistance.Com o intuito de dar suporte aos programas de melhoramento do cafeeiro que visam à obtenção de cultivares resistentes à ferrugem (Hemileia vastatrix), neste trabalho objetivou-se estudar a herança da resistência do Híbrido de Timor UFV 443-03 e identificar marcadores moleculares ligados aos genes caracterizados. Para o estudo de herança foram avaliadas três populações originadas do cruzamento entre o progenitor resistente Híbrido de Timor UFV 443-03 e o cultivar suscetível Catuaí Amarelo (UFV 2148-57). Dessas plantas analisadas, 243 correspondem a uma população F2, 114 a retrocruzamento suscetível (RCs) e 87 a retrocruzamento resistente (RCr). A inoculação foi realizada com a suspensão de esporos (2 mg/mL) do isolado da Raça I de H. vastatrix, em discos foliares, com três repetições para as populações F2 e RCs e duas para RCr. As plantas do Catuaí Amarelo UFV 2148-57 foram suscetíveis em todas as inoculações, enquanto o Híbrido de Timor UFV 443-03, a planta F1 e as plantas do RCr foram resistentes. Pela análise de segregação das populações F2, obtiveram-se duas hipóteses significativas: uma de que a resistência do cafeeiro Híbrido de Timor UFV 443-03 a H. vastatrix era governada por dois genes dominantes e independentes (15:1; P = 63,10) e a outra de que era conferida por três genes, sendo dois dominantes e um recessivo (61:3; P = 8,87). Plantas do RCs foram utilizadas para a confirmação dos padrões de segregação e segregaram na proporção de 3:1 (P = 74,56), o que era esperado para dois e para três genes. Esse resultado indicou que a resistência desse Híbrido de Timor é condicionada por dois genes dominantes independentes ou três genes independentes (dois dominantes e um recessivo). Como a herança encontrada foi oligogênica (dois ou três genes), para a confirmação e identificação de marcadores moleculares ligados aos genes, estes foram tratados como QTL e, então, localizados em mapa genético de ligação. Para isso, os indivíduos da população F2 foram analisados com um total de 110 marcadores moleculares. Como 16 marcadores apresentaram distorção da razão de segregação mendeliana esperada, o mapa foi construído com 94 marcadores (62 AFLP, 28 SSR e 4 RAPD). Considerando um LOD score mínimo de 3 e máxima recombinação de 40%, os marcadores ficaram agrupados em 11 grupos de ligação, cobrindo uma distância de 964,31 cM do genoma, e 13 marcadores não se ligaram a nenhum dos grupos formados. O maior intervalo entre dois marcadores foi de 32,1 cM, e 68,57% dos marcadores não excederam 20 cM. A caracterização e identificação de QTLs foram realizadas com o auxílio de metodologias de marca simples e intervalo simples. Pela metodologia da marca simples foi possível identificar cinco marcadores associados aos QTLs pelos métodos da ANOVA, regressão e máxima verossimilhança. Esses QTLs foram confirmados pela metodologia de intervalo simples por meio da regressão e máxima verossimilhança. Dois QTLs foram identificados, um deles no grupo de ligação 2 a 0 cM do marcador 21a, explicando 9,6% da variação fenotípica. O outro ficou localizado no grupo de ligação 3 a 13 cM do marcador 43a, explicando 9,3% da variação fenotípica. Esses dois QTLs confirmam, em número e posição, que a resistência do cafeeiro Híbrido de Timor UFV 443-03 a H. vastatrix é governada por dois genes dominantes e independentes, mostrando, assim, a importância da genômica para a identificação destes genes. Cabe salientar que as informações deste trabalho são inéditas para o caso do cafeeiro e podem ser úteis em programas de melhoramento baseado em seleção assistida e na clonagem posicional do gene de resistência à ferrugem. Assim, os dados deste estudo deverão fornecer subsídios para futuros trabalhos de melhoramento visando à obtenção de populações mais resistentes e produtivas.Conselho Nacional de Desenvolvimento Científico e Tecnológicoapplication/pdfporUniversidade Federal de ViçosaMestrado em FitotecniaUFVBRPlantas daninhas, Alelopatia, Herbicidas e Resíduos; Fisiologia de culturas; Manejo pós-colheita deCoffeaFerrugem do cafeeiroHerança da resistênciaMarcadores molecularesCoffeaCoffee rustResistance inheritanceMolecular markersCNPQ::CIENCIAS AGRARIAS::AGRONOMIA::FITOTECNIA::MELHORAMENTO VEGETALCaracterização fenotípica e molecular da resistência do cafeeiro Híbrido de Timor a Hemileia vastatrixPhenotypic and molecular characterization of the resistance of coffee Híbrido de Timor of the Hemileia vastatrixinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALtexto completo.pdfapplication/pdf2656828https://locus.ufv.br//bitstream/123456789/4538/1/texto%20completo.pdf8bc70c0429aa62c04a9679cf9f1486b7MD51TEXTtexto completo.pdf.txttexto completo.pdf.txtExtracted texttext/plain118794https://locus.ufv.br//bitstream/123456789/4538/2/texto%20completo.pdf.txtf1d9ae506d0e85ec7db6dbed9ccab568MD52THUMBNAILtexto completo.pdf.jpgtexto completo.pdf.jpgIM Thumbnailimage/jpeg3638https://locus.ufv.br//bitstream/123456789/4538/3/texto%20completo.pdf.jpgd1a178e919454954ef806304dc87dc25MD53123456789/45382016-04-10 23:05:51.764oai:locus.ufv.br:123456789/4538Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452016-04-11T02:05:51LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false
dc.title.por.fl_str_mv Caracterização fenotípica e molecular da resistência do cafeeiro Híbrido de Timor a Hemileia vastatrix
dc.title.alternative.eng.fl_str_mv Phenotypic and molecular characterization of the resistance of coffee Híbrido de Timor of the Hemileia vastatrix
title Caracterização fenotípica e molecular da resistência do cafeeiro Híbrido de Timor a Hemileia vastatrix
spellingShingle Caracterização fenotípica e molecular da resistência do cafeeiro Híbrido de Timor a Hemileia vastatrix
Pestana, Kátia Nogueira
Coffea
Ferrugem do cafeeiro
Herança da resistência
Marcadores moleculares
Coffea
Coffee rust
Resistance inheritance
Molecular markers
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::FITOTECNIA::MELHORAMENTO VEGETAL
title_short Caracterização fenotípica e molecular da resistência do cafeeiro Híbrido de Timor a Hemileia vastatrix
title_full Caracterização fenotípica e molecular da resistência do cafeeiro Híbrido de Timor a Hemileia vastatrix
title_fullStr Caracterização fenotípica e molecular da resistência do cafeeiro Híbrido de Timor a Hemileia vastatrix
title_full_unstemmed Caracterização fenotípica e molecular da resistência do cafeeiro Híbrido de Timor a Hemileia vastatrix
title_sort Caracterização fenotípica e molecular da resistência do cafeeiro Híbrido de Timor a Hemileia vastatrix
author Pestana, Kátia Nogueira
author_facet Pestana, Kátia Nogueira
author_role author
dc.contributor.authorLattes.por.fl_str_mv http://lattes.cnpq.br/5642596758984532
dc.contributor.author.fl_str_mv Pestana, Kátia Nogueira
dc.contributor.advisor-co1.fl_str_mv Caixeta, Eveline Teixeira
dc.contributor.advisor-co1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4728636Z7
dc.contributor.advisor-co2.fl_str_mv Zambolim, Eunize Maciel
dc.contributor.advisor-co2Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4783380J6
dc.contributor.advisor1.fl_str_mv Sakiyama, Ney Sussumu
dc.contributor.advisor1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4781483H8
dc.contributor.referee1.fl_str_mv Cruz, Cosme Damião
dc.contributor.referee1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4788274A6
dc.contributor.referee2.fl_str_mv Zambolim, Laércio
dc.contributor.referee2Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4787254T6
contributor_str_mv Caixeta, Eveline Teixeira
Zambolim, Eunize Maciel
Sakiyama, Ney Sussumu
Cruz, Cosme Damião
Zambolim, Laércio
dc.subject.por.fl_str_mv Coffea
Ferrugem do cafeeiro
Herança da resistência
Marcadores moleculares
topic Coffea
Ferrugem do cafeeiro
Herança da resistência
Marcadores moleculares
Coffea
Coffee rust
Resistance inheritance
Molecular markers
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::FITOTECNIA::MELHORAMENTO VEGETAL
dc.subject.eng.fl_str_mv Coffea
Coffee rust
Resistance inheritance
Molecular markers
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::FITOTECNIA::MELHORAMENTO VEGETAL
description In order to support the breeding programs coffee that to aim to obtain cultivars resistant to rust (Hemileia vastatrix), this work aimed to study the resistance inheritance of Híbrido de Timor UFV 443-03 and identify molecular markers linked characterized genes. To study the inheritance were evaluated three populations originated from cross the Híbrido de Timor UFV 443-03 resistant parent and Catuaí Amarelo (UFV 2148-57) susceptible cultivar. These plants analyzed, 243 correspond to an F2 population of 114 susceptible backcrossing (BCs) and 87 resistant backcrossing (BCr). Inoculation was performed with a spore suspension (2mg/mL) isolated from the Race I of H. vastatrix in leaf discs, with three replicates for the F2 and RCs, and two for RCr. Plants of the Catuaí Amarelo UFV 2148-57 were susceptible in all inoculations, while the Híbrido de Timor UFV 443-03, the plant F1 and the BCr plants were resistant. Segregation analysis of F2 populations obtained two significant cases, the resistance of a coffee Híbrido de Timor UFV 443-03 the H. vastatrix was governed by two independent and dominant genes (15:1, P = 63.10) and the other three genes is conferred by two dominant and one recessive (61:3, P = 8.87). Plants of the BCs were used to confirm the segregation patterns, which segregated in a rate of 3:1 (P = 74.56), expected segregation for two and three genes. This result demonstrate that the resistance of the Híbrido de Timor is conditioned by two dominant independent genes or three independent genes (two dominant and one recessive). As was found oligogenic inheritance (two or three genes), for confirmation and identification of molecular markers linked to genes, they were treated as QTL, and then located in link genetic map. For this, subjects in the F2 population were analyzed with a total of 110 molecular markers. As 16 markers showed distortion of Mendelian segregation expected rate, the map was constructed with 94 markers (62 AFLP, 28 SSR and 4 RAPD). Whereas a LOD score minimum of three and of 40% recombination maximum, the markers were grouped into 11 linkage groups covering a distance 964.31 cM of the genome, with 13 markers not in any of the linkage groups formed. The longest interval between two markers was 32.1 cM and 68.57% of the markers did not exceed 20 cM. The characterization and identification of QTLs were performed by simple mark and simple interval methods. Methodology of the simple mark was possible to identify markers five associated with QTLs by the methods of ANOVA, regression and maximum likelihood. These QTLs were confirmed by simple interval methodology by means of regression and maximum likelihood. Two QTLs were identified in a 2 linkage group the 0 cM marker 21a, explaining 9.6% of the phenotypic variation. The other was located in 3 linkage group to 13 cM marker 43a, explaining 9.3% of the phenotypic variation. These two QTLs confirm the number and position in the coffee resistance Híbrido de Timor UFV 443-03 H. vastatrix is governed by two independent and dominant genes, thus demonstrating the importance of genomics to identify them. It should be noted that the information obtained in this study are unique to coffee, which may be useful in breeding programs based on assisted selection and positional cloning of the gene for rust resistance. So, should provide support for future breeding populations to obtain more productive and resistance.
publishDate 2010
dc.date.issued.fl_str_mv 2010-07-16
dc.date.available.fl_str_mv 2013-10-28
2015-03-26T13:39:39Z
dc.date.accessioned.fl_str_mv 2015-03-26T13:39:39Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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status_str publishedVersion
dc.identifier.citation.fl_str_mv PESTANA, Kátia Nogueira. Phenotypic and molecular characterization of the resistance of coffee Híbrido de Timor of the Hemileia vastatrix. 2010. 72 f. Dissertação (Mestrado em Plantas daninhas, Alelopatia, Herbicidas e Resíduos; Fisiologia de culturas; Manejo pós-colheita de) - Universidade Federal de Viçosa, Viçosa, 2010.
dc.identifier.uri.fl_str_mv http://locus.ufv.br/handle/123456789/4538
identifier_str_mv PESTANA, Kátia Nogueira. Phenotypic and molecular characterization of the resistance of coffee Híbrido de Timor of the Hemileia vastatrix. 2010. 72 f. Dissertação (Mestrado em Plantas daninhas, Alelopatia, Herbicidas e Resíduos; Fisiologia de culturas; Manejo pós-colheita de) - Universidade Federal de Viçosa, Viçosa, 2010.
url http://locus.ufv.br/handle/123456789/4538
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dc.publisher.country.fl_str_mv BR
dc.publisher.department.fl_str_mv Plantas daninhas, Alelopatia, Herbicidas e Resíduos; Fisiologia de culturas; Manejo pós-colheita de
publisher.none.fl_str_mv Universidade Federal de Viçosa
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