Phase-field models of tumor growth with angiogenesis

Detalhes bibliográficos
Ano de defesa: 2014
Autor(a) principal: Lima, Ernesto Augusto Bueno da Fonseca lattes
Orientador(a): Almeida, Regina Célia Cerqueira de lattes
Banca de defesa: Loula, Abimael Fernando Dourado lattes, Coutinho, Alvaro Luiz Gayoso de Azeredo lattes, Costa, Michel Iskin da Silveira lattes, Bevilácqua, Luiz lattes, Godoy, Wesley Augusto Conde
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Laboratório Nacional de Computação Científica
Programa de Pós-Graduação: Programa de Pós-Graduação em Modelagem Computacional
Departamento: Serviço de Análise e Apoio a Formação de Recursos Humanos
País: BR
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: https://tede.lncc.br/handle/tede/180
Resumo: The development of predictive computational models of tumor initiation, growth, and decline is faced with many formidable challenges. Phenomenological models which attempt to capture the complex interactions of multiple tissue and cellular species must cope with moving interfaces of heterogeneous media and the huge uncertainties of the parameters and their evolution. They must be able to deliver predictions consistent with events that take place at cellular scales, and they must faithfully depict biological mechanisms and events that are known to be associated with various forms of cancer. In the present work, some models for the tumor behavior are presented which fall within the framework of phase-field (or diffuse-interface) models suggested by continuum mixture theory. This framework provides for the simultaneous treatment of interactions of multiple evolving species, such as tumor cells, necrotic cell cores, nutrients, and other cellular and tissue types that exist and interact in living tissue. In the present work, a hybrid phase field ten-species vascular model for the tumor growth is developed, which couples the tumor growth with sprouting through angiogenesis. The model is able to represent the branching of new vessels through coupling a discrete model for which the angiogenesis is started upon pre-defined conditions on the nutrient deprivation in the continuum model. Such conditions are represented by hypoxic cells that release tumor growth factors that ultimately trigger vascular growth. We discuss the numerical approximation of the model using mixed finite elements. We also consider an avascular stochastic six-species tumor growth model derived directly from the hybrid ten-species model. The stochasticity comes from modeling uncertainties in the parameters of the model. We perform a sensitivity analysis to identify the more relevant parameters on the tumor mass growth. The stochastic model is then developed taking into account the uncertainty of the most influential parameter. The numerical approximation of the model using Stochastic Collocation method to treat uncertainties in the nonlinear system is presented. The results of numerous numerical experiments are also presented and discussed.
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spelling Almeida, Regina Célia Cerqueira deCPF:59472731791http://lattes.cnpq.br/6688041530466410Oden, John TinsleyCPF:216695507http://lattes.cnpq.br/8931182291799997Loula, Abimael Fernando DouradoCPF:24477575734http://lattes.cnpq.br/7315592936477868Coutinho, Alvaro Luiz Gayoso de AzeredoCosta, Michel Iskin da SilveiraCPF:15083900459http://lattes.cnpq.br/3313361232260092Bevilácqua, LuizCPF:19141327700http://lattes.cnpq.br/5898851138882202Godoy, Wesley Augusto CondeCPF:04121251881http://lattes.cnpq.br/0147181014156799CPF:35299650817http://lattes.cnpq.br/2188154440681419Lima, Ernesto Augusto Bueno da Fonseca2015-03-04T18:57:59Z2014-07-092014-04-29https://tede.lncc.br/handle/tede/180The development of predictive computational models of tumor initiation, growth, and decline is faced with many formidable challenges. Phenomenological models which attempt to capture the complex interactions of multiple tissue and cellular species must cope with moving interfaces of heterogeneous media and the huge uncertainties of the parameters and their evolution. They must be able to deliver predictions consistent with events that take place at cellular scales, and they must faithfully depict biological mechanisms and events that are known to be associated with various forms of cancer. In the present work, some models for the tumor behavior are presented which fall within the framework of phase-field (or diffuse-interface) models suggested by continuum mixture theory. This framework provides for the simultaneous treatment of interactions of multiple evolving species, such as tumor cells, necrotic cell cores, nutrients, and other cellular and tissue types that exist and interact in living tissue. In the present work, a hybrid phase field ten-species vascular model for the tumor growth is developed, which couples the tumor growth with sprouting through angiogenesis. The model is able to represent the branching of new vessels through coupling a discrete model for which the angiogenesis is started upon pre-defined conditions on the nutrient deprivation in the continuum model. Such conditions are represented by hypoxic cells that release tumor growth factors that ultimately trigger vascular growth. We discuss the numerical approximation of the model using mixed finite elements. We also consider an avascular stochastic six-species tumor growth model derived directly from the hybrid ten-species model. The stochasticity comes from modeling uncertainties in the parameters of the model. We perform a sensitivity analysis to identify the more relevant parameters on the tumor mass growth. The stochastic model is then developed taking into account the uncertainty of the most influential parameter. The numerical approximation of the model using Stochastic Collocation method to treat uncertainties in the nonlinear system is presented. The results of numerous numerical experiments are also presented and discussed.Modelos matematicos e computacionais sao utilizados na compreensao de fenomenos complexos, sendo aplicados em diversas areas como engenharia, fisica e biologia. Na Medicina tem um importante papel na simulacao do tratamento e evolucao de algumas doencas, entre elas o cancer. O desenvolvimento de modelos computacionais para o crescimento tumoral se depara com desafios formidaveis. Modelos fenomenologicos que tentam capturar as complexas interacoes de multiplos tecidos e especies celulares devem lidar com interfaces em meios heterogeneos e as enormes incertezas dos parametros e suas evolucoes. Eles devem ser capazes de proporcionar predicoes consistentes com eventos que ocorrem em escalas celulares, e devem representar fielmente os mecanismos biologicos associados ao cancer. No presente trabalho, sao apresentados alguns modelos para o crescimento tumoral. Esses modelos inserem-se no ambito de modelos de campo de fase (ou interface difusiva) sugeridos pela teoria mistura. Esta metodologia preve o tratamento simultaneo de interacoes entre multiplos constituintes, como as celulas tumorais, celulas necroticas, nutrientes e outros tipos celulares e teciduais que existem e interagem em tecidos vivos. Neste trabalho, um modelo hibrido de campo de fases, de dez constituintes e desenvolvido para o crescimento tumoral vascular, que acopla o crescimento de tumores com crescimento de novos vasos sanguineos atraves da angiogenese. O modelo é capaz de representar a ramificacao de novos vasos atraves do acoplamento de um modelo discreto, no qual a angiogenese é iniciada mediante condicoes pre-definidas, relacionadas a privacao de nutrientes no modelo macroscopico. Tais condicoes sao representadas por celulas hipoxicas que liberam quimicos reponsaveis por induzir a angiogenese tumoral. A aproximacao numerica do modelo usando elementos finitos mistos é discutida. Considera-se tambem um modelo estocastico avascular de seis constituintes para o crescimento tumoral, derivado diretamente do modelo hibrido de dez constituintes. A estocasticidade vem de incertezas na modelagem dos parametros do modelo. Realiza-se uma analise de sensibilidade para identificar os parametros mais relevantes sobre o crescimento da massa tumoral. O modelo estocastico é entao desenvolvido tendo em conta a incerteza no parametro mais influente. A aproximacao numerica do modelo usando o metodo estocastico de Colocacao para tratar incertezas no sistema nao-linear é apresentada. Os resultados de varios experimentos numericos tambem sao apresentados e discutidos.Made available in DSpace on 2015-03-04T18:57:59Z (GMT). No. of bitstreams: 1 thesis.pdf: 5073087 bytes, checksum: f23ad1a1747577782cd9c9eab7574795 (MD5) Previous issue date: 2014-04-29Conselho Nacional de Desenvolvimento Cientifico e Tecnologicoapplication/pdfhttp://tede-server.lncc.br:8080/retrieve/515/thesis.pdf.jpgporLaboratório Nacional de Computação CientíficaPrograma de Pós-Graduação em Modelagem ComputacionalLNCCBRServiço de Análise e Apoio a Formação de Recursos HumanosCâncer - Modelos matemáticosCancer - Mathematical modelsCNPQ::CIENCIAS DA SAUDE::MEDICINA::CLINICA MEDICA::CANCEROLOGIAPhase-field models of tumor growth with angiogenesisModelos de campo de fases para o crescimento tumoral com angiogênesesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações do LNCCinstname:Laboratório Nacional de Computação Científica (LNCC)instacron:LNCCORIGINALthesis.pdfapplication/pdf5073087http://tede-server.lncc.br:8080/tede/bitstream/tede/180/1/thesis.pdff23ad1a1747577782cd9c9eab7574795MD51THUMBNAILthesis.pdf.jpgthesis.pdf.jpgimage/jpeg3051http://tede-server.lncc.br:8080/tede/bitstream/tede/180/2/thesis.pdf.jpga200238620c0b7618c8cf7bbbd279466MD52tede/1802018-07-04 09:59:45.065oai:tede-server.lncc.br:tede/180Biblioteca Digital de Teses e Dissertaçõeshttps://tede.lncc.br/PUBhttps://tede.lncc.br/oai/requestlibrary@lncc.br||library@lncc.bropendoar:2018-07-04T12:59:45Biblioteca Digital de Teses e Dissertações do LNCC - Laboratório Nacional de Computação Científica (LNCC)false
dc.title.eng.fl_str_mv Phase-field models of tumor growth with angiogenesis
dc.title.alternative.por.fl_str_mv Modelos de campo de fases para o crescimento tumoral com angiogêneses
title Phase-field models of tumor growth with angiogenesis
spellingShingle Phase-field models of tumor growth with angiogenesis
Lima, Ernesto Augusto Bueno da Fonseca
Câncer - Modelos matemáticos
Cancer - Mathematical models
CNPQ::CIENCIAS DA SAUDE::MEDICINA::CLINICA MEDICA::CANCEROLOGIA
title_short Phase-field models of tumor growth with angiogenesis
title_full Phase-field models of tumor growth with angiogenesis
title_fullStr Phase-field models of tumor growth with angiogenesis
title_full_unstemmed Phase-field models of tumor growth with angiogenesis
title_sort Phase-field models of tumor growth with angiogenesis
author Lima, Ernesto Augusto Bueno da Fonseca
author_facet Lima, Ernesto Augusto Bueno da Fonseca
author_role author
dc.contributor.advisor1.fl_str_mv Almeida, Regina Célia Cerqueira de
dc.contributor.advisor1ID.fl_str_mv CPF:59472731791
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/6688041530466410
dc.contributor.advisor-co1.fl_str_mv Oden, John Tinsley
dc.contributor.advisor-co1ID.fl_str_mv CPF:216695507
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/8931182291799997
dc.contributor.referee1.fl_str_mv Loula, Abimael Fernando Dourado
dc.contributor.referee1ID.fl_str_mv CPF:24477575734
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/7315592936477868
dc.contributor.referee2.fl_str_mv Coutinho, Alvaro Luiz Gayoso de Azeredo
dc.contributor.referee3.fl_str_mv Costa, Michel Iskin da Silveira
dc.contributor.referee3ID.fl_str_mv CPF:15083900459
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/3313361232260092
dc.contributor.referee4.fl_str_mv Bevilácqua, Luiz
dc.contributor.referee4ID.fl_str_mv CPF:19141327700
dc.contributor.referee4Lattes.fl_str_mv http://lattes.cnpq.br/5898851138882202
dc.contributor.referee5.fl_str_mv Godoy, Wesley Augusto Conde
dc.contributor.referee5ID.fl_str_mv CPF:04121251881
dc.contributor.referee5Lattes.fl_str_mv http://lattes.cnpq.br/0147181014156799
dc.contributor.authorID.fl_str_mv CPF:35299650817
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/2188154440681419
dc.contributor.author.fl_str_mv Lima, Ernesto Augusto Bueno da Fonseca
contributor_str_mv Almeida, Regina Célia Cerqueira de
Oden, John Tinsley
Loula, Abimael Fernando Dourado
Coutinho, Alvaro Luiz Gayoso de Azeredo
Costa, Michel Iskin da Silveira
Bevilácqua, Luiz
Godoy, Wesley Augusto Conde
dc.subject.por.fl_str_mv Câncer - Modelos matemáticos
topic Câncer - Modelos matemáticos
Cancer - Mathematical models
CNPQ::CIENCIAS DA SAUDE::MEDICINA::CLINICA MEDICA::CANCEROLOGIA
dc.subject.eng.fl_str_mv Cancer - Mathematical models
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS DA SAUDE::MEDICINA::CLINICA MEDICA::CANCEROLOGIA
description The development of predictive computational models of tumor initiation, growth, and decline is faced with many formidable challenges. Phenomenological models which attempt to capture the complex interactions of multiple tissue and cellular species must cope with moving interfaces of heterogeneous media and the huge uncertainties of the parameters and their evolution. They must be able to deliver predictions consistent with events that take place at cellular scales, and they must faithfully depict biological mechanisms and events that are known to be associated with various forms of cancer. In the present work, some models for the tumor behavior are presented which fall within the framework of phase-field (or diffuse-interface) models suggested by continuum mixture theory. This framework provides for the simultaneous treatment of interactions of multiple evolving species, such as tumor cells, necrotic cell cores, nutrients, and other cellular and tissue types that exist and interact in living tissue. In the present work, a hybrid phase field ten-species vascular model for the tumor growth is developed, which couples the tumor growth with sprouting through angiogenesis. The model is able to represent the branching of new vessels through coupling a discrete model for which the angiogenesis is started upon pre-defined conditions on the nutrient deprivation in the continuum model. Such conditions are represented by hypoxic cells that release tumor growth factors that ultimately trigger vascular growth. We discuss the numerical approximation of the model using mixed finite elements. We also consider an avascular stochastic six-species tumor growth model derived directly from the hybrid ten-species model. The stochasticity comes from modeling uncertainties in the parameters of the model. We perform a sensitivity analysis to identify the more relevant parameters on the tumor mass growth. The stochastic model is then developed taking into account the uncertainty of the most influential parameter. The numerical approximation of the model using Stochastic Collocation method to treat uncertainties in the nonlinear system is presented. The results of numerous numerical experiments are also presented and discussed.
publishDate 2014
dc.date.available.fl_str_mv 2014-07-09
dc.date.issued.fl_str_mv 2014-04-29
dc.date.accessioned.fl_str_mv 2015-03-04T18:57:59Z
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dc.publisher.department.fl_str_mv Serviço de Análise e Apoio a Formação de Recursos Humanos
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