Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis

Detalhes bibliográficos
Ano de defesa: 2013
Autor(a) principal: Alves, B?rbara Rodrigues lattes
Orientador(a): Graeff-teixeira, Carlos
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Pontif?cia Universidade Cat?lica do Rio Grande do Sul
Programa de Pós-Graduação: Programa de P?s-Gradua??o em Biologia Celular e Molecular
Departamento: Faculdade de Bioci?ncias
País: BR
Palavras-chave em Português:
DNA
Área do conhecimento CNPq:
Link de acesso: http://tede2.pucrs.br/tede2/handle/tede/5462
Resumo: Abdominal angiostrongyliasis is a zoonotic infection caused by Angiostrongylus costaricensis, a nematode with intravascular location in the mesentery. Humans become accidentally infected by ingesting food or water contaminated with third stage larvae present in mucus secreted by intermediate hosts, terrestrial mollusks. The confirmed diagnosis of human infection is made only through histopathology of biopsies or mesenteric tissues removed during surgical treatment. There are many cases in which the pathology is very suggestive however there is no evidence of parasite structures in the sections. Thus, the goal of this study was to standardize the extraction of DNA from formalin fixed paraffin embedded (FFPE) tissues from mice experimentally infected with Angiostrongylus costaricensis for DNA detection and future study of human angiostrongyliasis suspected cases. Materials and methods: 45 samples of each tissue of liver, lung, intestine and mesentery, totalizing 180 samples from 15 infected mice with A.costaricensis. Worms of Angiostrongylus cantonensis were separately embedded in paraffin as controls. From embedded tissues, histological sections of 3 μm were performed and stained with HE to confirm the presence of parasite structures under the microscope. Approximately 24 to 31 sections of 10 μm were used for DNA extraction. Worms were embedded in paraffin under different conditions such as fixative chemicals, time of fixation and types of paraffin. Specific DNA of Angiostrongylus was detected by Polymerase Chain Reaction (PCR) to amplify a sequence of 232bp, previously designed for detection in human serum assays. There was a positive amplification in 33 samples from liver, 12 from lung, 45 from mesentery and 36 from intestine wall. For different conditions of embedment, the amplification of the DNA with the buffered formalin fixative was more efficient compared to the unbuffered one; the time of fixation and the commercial brand of wax did not affect the detection of nucleic acids, however, the ratio of paraffin to tissue appears to influence the performance of the method since samples with residual paraffin no amplification was obtained. The 232bp segment also was not visualized in samples where there was no evidence of presence of parasite structures, suggesting that histopathology findings should guide the choice of the samples for DNA extraction, and those most likely to have parasite structures surrounding the lesion, even if degraded. The description of the performance of PCR in paraffin embedded tissues as a diagnostic tool in human abdominal angiostrongyliasis depends on the detailed evaluation criteria in histopathology and their association with a positive amplification of the specific probe.
id P_RS_29197476b8e33be5114eca45fe57b8bf
oai_identifier_str oai:tede2.pucrs.br:tede/5462
network_acronym_str P_RS
network_name_str Biblioteca Digital de Teses e Dissertações da PUC_RS
repository_id_str
spelling Graeff-teixeira, CarlosCPF:28744675020CPF:33462324845http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4270787P1Alves, B?rbara Rodrigues2015-04-14T14:51:24Z2013-06-112013-03-27ALVES, B?rbara Rodrigues. Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis. 2013. 44 f. Disserta??o (Mestrado em Biologia Celular e Molecular) - Pontif?cia Universidade Cat?lica do Rio Grande do Sul, Porto Alegre, 2013.http://tede2.pucrs.br/tede2/handle/tede/5462Abdominal angiostrongyliasis is a zoonotic infection caused by Angiostrongylus costaricensis, a nematode with intravascular location in the mesentery. Humans become accidentally infected by ingesting food or water contaminated with third stage larvae present in mucus secreted by intermediate hosts, terrestrial mollusks. The confirmed diagnosis of human infection is made only through histopathology of biopsies or mesenteric tissues removed during surgical treatment. There are many cases in which the pathology is very suggestive however there is no evidence of parasite structures in the sections. Thus, the goal of this study was to standardize the extraction of DNA from formalin fixed paraffin embedded (FFPE) tissues from mice experimentally infected with Angiostrongylus costaricensis for DNA detection and future study of human angiostrongyliasis suspected cases. Materials and methods: 45 samples of each tissue of liver, lung, intestine and mesentery, totalizing 180 samples from 15 infected mice with A.costaricensis. Worms of Angiostrongylus cantonensis were separately embedded in paraffin as controls. From embedded tissues, histological sections of 3 μm were performed and stained with HE to confirm the presence of parasite structures under the microscope. Approximately 24 to 31 sections of 10 μm were used for DNA extraction. Worms were embedded in paraffin under different conditions such as fixative chemicals, time of fixation and types of paraffin. Specific DNA of Angiostrongylus was detected by Polymerase Chain Reaction (PCR) to amplify a sequence of 232bp, previously designed for detection in human serum assays. There was a positive amplification in 33 samples from liver, 12 from lung, 45 from mesentery and 36 from intestine wall. For different conditions of embedment, the amplification of the DNA with the buffered formalin fixative was more efficient compared to the unbuffered one; the time of fixation and the commercial brand of wax did not affect the detection of nucleic acids, however, the ratio of paraffin to tissue appears to influence the performance of the method since samples with residual paraffin no amplification was obtained. The 232bp segment also was not visualized in samples where there was no evidence of presence of parasite structures, suggesting that histopathology findings should guide the choice of the samples for DNA extraction, and those most likely to have parasite structures surrounding the lesion, even if degraded. The description of the performance of PCR in paraffin embedded tissues as a diagnostic tool in human abdominal angiostrongyliasis depends on the detailed evaluation criteria in histopathology and their association with a positive amplification of the specific probe.Angiostrongil?ase abdominal ? uma infec??o zoon?tica causada por Angiostrongylus costaricensis, um nemat?deo com localiza??o intravascular no mesent?rio. O homem se infecta acidentalmente ao ingerir alimentos ou ?gua contaminados com larvas de terceiro est?gio presentes no muco secretado por moluscos terrestres, hospedeiros intermedi?rios. O diagn?stico confirmado da infec??o humana ? feito pelo exame histopatol?gico de bi?psias ou segmentos ressecados durante o tratamento cir?rgico de casos complicados. H? muitos casos em que a histopatologia ? muito sugestiva, por?m sem evidenciarem-se estruturas do parasito nos cortes. Desse modo, o objetivo foi padronizar a extra??o de DNA em tecidos embebidos em parafina em modelo murino visando ? detec??o de ?cidos nucl?icos e posterior utiliza??o no estudo de casos suspeitos a partir do exame histopatol?gico em humanos. Materiais e M?todos: 45 amostras de cada tecido de f?gado, pulm?o, mesent?rio e intestino, totalizando 180 amostras de 15 camundongos infectados com Angiostrongylus costaricensis; e vermes de Angiostrongylus cantonensis foram embebidos separadamente em parafina e nesses blocos contendo os tecidos foram realizados cortes histol?gicos de 3 μm para colora??o por Hematoxilina-Eosina, e confirmado a presen?a de estruturas parasit?rias, foram coletados de 24 a 31 cortes de 10 μm em um microtubo para a extra??o de DNA. Para a padroniza??o do m?todo, vermes foram embebidos em parafina em diferentes condi??es tais como o tipo de fixador, tempo de fixa??o e marcas comerciais de parafina. A partir dos cortes foram realizadas as extra??es de DNA com o Kit Quiagen DNEasy tissue. Para a detec??o de DNA espec?fico de Angiostrongylus foi utilizado a Rea??o em Cadeia da Polimerase (PCR), para amplifica??o de uma sequ?ncia de 232pb, previamente desenhada para ensaios de detec??o em soro humano. Em 33 amostras de f?gado, 12 de pulm?o, 45 de mesent?rio e 36 da parede intestinal houve amplifica??o do segmento de 232pb. Para as diferentes condi??es de emblocamento, as amplifica??es do DNA das amostras a partir do fixador formalina tamponada foram mais frequentes quando comparado com a formalina n?o tamponada; o tempo de fixa??o e o tipo de parafina n?o interferiram na detec??o de ?cidos nucl?icos, entretanto, a quantidade de parafina no tecido parece influenciar no desempenho do m?todo, pois nas amostras onde havia excesso de parafina n?o houve amplifica??o. O segmento de 232pb tamb?m n?o foi visualizado nas amostras onde n?o foi evidenciada a presen?a de estruturas parasit?rias, sugerindo que a informa??o provinda da histopatologia deve orientar a retirada da amostra para extra??o de DNA, como aquelas de maior probabilidade de possuir estruturas parasit?rias nas proximidades da les?o, mesmo que degradadas. A descri??o do desempenho da PCR como recurso diagn?stico da infec??o humana, em material embebido em parafina, depende da avalia??o detalhada dos crit?rios de suspeita na histopatologia correlacionada com a frequ?ncia e reprodutibilidade do resultado da extra??o de DNA e sua amplifica??o.Made available in DSpace on 2015-04-14T14:51:24Z (GMT). No. of bitstreams: 1 448547.pdf: 664963 bytes, checksum: 65aa603337ed5626e1f7e96bf42a9364 (MD5) Previous issue date: 2013-03-27application/pdfhttp://tede2.pucrs.br:80/tede2/retrieve/16514/448547.pdf.jpgporPontif?cia Universidade Cat?lica do Rio Grande do SulPrograma de P?s-Gradua??o em Biologia Celular e MolecularPUCRSBRFaculdade de Bioci?nciasBIOLOGIA MOLECULARDNADOEN?AS TRANSMISS?VEISREA??O EM CADEIA DA POLIMERASECNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA::BIOLOGIA MOLECULARPadroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensisinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis819824693009663736060060036528317262667714info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da PUC_RSinstname:Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)instacron:PUC_RSTHUMBNAIL448547.pdf.jpg448547.pdf.jpgimage/jpeg3878http://tede2.pucrs.br/tede2/bitstream/tede/5462/3/448547.pdf.jpgfac380ab9c65609f19b5e6d4b4f0010cMD53TEXT448547.pdf.txt448547.pdf.txttext/plain91745http://tede2.pucrs.br/tede2/bitstream/tede/5462/2/448547.pdf.txt93b7092d8f5def8dd0b6bc12520b9744MD52ORIGINAL448547.pdfapplication/pdf664963http://tede2.pucrs.br/tede2/bitstream/tede/5462/1/448547.pdf65aa603337ed5626e1f7e96bf42a9364MD51tede/54622015-05-14 11:40:31.248oai:tede2.pucrs.br:tede/5462Biblioteca Digital de Teses e Dissertaçõeshttp://tede2.pucrs.br/tede2/PRIhttps://tede2.pucrs.br/oai/requestbiblioteca.central@pucrs.br||opendoar:2015-05-14T14:40:31Biblioteca Digital de Teses e Dissertações da PUC_RS - Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)false
dc.title.por.fl_str_mv Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis
title Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis
spellingShingle Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis
Alves, B?rbara Rodrigues
BIOLOGIA MOLECULAR
DNA
DOEN?AS TRANSMISS?VEIS
REA??O EM CADEIA DA POLIMERASE
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA::BIOLOGIA MOLECULAR
title_short Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis
title_full Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis
title_fullStr Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis
title_full_unstemmed Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis
title_sort Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis
author Alves, B?rbara Rodrigues
author_facet Alves, B?rbara Rodrigues
author_role author
dc.contributor.advisor1.fl_str_mv Graeff-teixeira, Carlos
dc.contributor.advisor1ID.fl_str_mv CPF:28744675020
dc.contributor.authorID.fl_str_mv CPF:33462324845
dc.contributor.authorLattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4270787P1
dc.contributor.author.fl_str_mv Alves, B?rbara Rodrigues
contributor_str_mv Graeff-teixeira, Carlos
dc.subject.por.fl_str_mv BIOLOGIA MOLECULAR
DNA
DOEN?AS TRANSMISS?VEIS
REA??O EM CADEIA DA POLIMERASE
topic BIOLOGIA MOLECULAR
DNA
DOEN?AS TRANSMISS?VEIS
REA??O EM CADEIA DA POLIMERASE
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA::BIOLOGIA MOLECULAR
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA::BIOLOGIA MOLECULAR
description Abdominal angiostrongyliasis is a zoonotic infection caused by Angiostrongylus costaricensis, a nematode with intravascular location in the mesentery. Humans become accidentally infected by ingesting food or water contaminated with third stage larvae present in mucus secreted by intermediate hosts, terrestrial mollusks. The confirmed diagnosis of human infection is made only through histopathology of biopsies or mesenteric tissues removed during surgical treatment. There are many cases in which the pathology is very suggestive however there is no evidence of parasite structures in the sections. Thus, the goal of this study was to standardize the extraction of DNA from formalin fixed paraffin embedded (FFPE) tissues from mice experimentally infected with Angiostrongylus costaricensis for DNA detection and future study of human angiostrongyliasis suspected cases. Materials and methods: 45 samples of each tissue of liver, lung, intestine and mesentery, totalizing 180 samples from 15 infected mice with A.costaricensis. Worms of Angiostrongylus cantonensis were separately embedded in paraffin as controls. From embedded tissues, histological sections of 3 μm were performed and stained with HE to confirm the presence of parasite structures under the microscope. Approximately 24 to 31 sections of 10 μm were used for DNA extraction. Worms were embedded in paraffin under different conditions such as fixative chemicals, time of fixation and types of paraffin. Specific DNA of Angiostrongylus was detected by Polymerase Chain Reaction (PCR) to amplify a sequence of 232bp, previously designed for detection in human serum assays. There was a positive amplification in 33 samples from liver, 12 from lung, 45 from mesentery and 36 from intestine wall. For different conditions of embedment, the amplification of the DNA with the buffered formalin fixative was more efficient compared to the unbuffered one; the time of fixation and the commercial brand of wax did not affect the detection of nucleic acids, however, the ratio of paraffin to tissue appears to influence the performance of the method since samples with residual paraffin no amplification was obtained. The 232bp segment also was not visualized in samples where there was no evidence of presence of parasite structures, suggesting that histopathology findings should guide the choice of the samples for DNA extraction, and those most likely to have parasite structures surrounding the lesion, even if degraded. The description of the performance of PCR in paraffin embedded tissues as a diagnostic tool in human abdominal angiostrongyliasis depends on the detailed evaluation criteria in histopathology and their association with a positive amplification of the specific probe.
publishDate 2013
dc.date.available.fl_str_mv 2013-06-11
dc.date.issued.fl_str_mv 2013-03-27
dc.date.accessioned.fl_str_mv 2015-04-14T14:51:24Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv ALVES, B?rbara Rodrigues. Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis. 2013. 44 f. Disserta??o (Mestrado em Biologia Celular e Molecular) - Pontif?cia Universidade Cat?lica do Rio Grande do Sul, Porto Alegre, 2013.
dc.identifier.uri.fl_str_mv http://tede2.pucrs.br/tede2/handle/tede/5462
identifier_str_mv ALVES, B?rbara Rodrigues. Padroniza??o da extra??o de DNA em tecidos de camundongos fixados em formalina e embebidos em parafina (FFPE) infectados experimentalmente com Angiostrongylus costaricensis. 2013. 44 f. Disserta??o (Mestrado em Biologia Celular e Molecular) - Pontif?cia Universidade Cat?lica do Rio Grande do Sul, Porto Alegre, 2013.
url http://tede2.pucrs.br/tede2/handle/tede/5462
dc.language.iso.fl_str_mv por
language por
dc.relation.program.fl_str_mv 8198246930096637360
dc.relation.confidence.fl_str_mv 600
600
dc.relation.department.fl_str_mv 36528317262667714
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Pontif?cia Universidade Cat?lica do Rio Grande do Sul
dc.publisher.program.fl_str_mv Programa de P?s-Gradua??o em Biologia Celular e Molecular
dc.publisher.initials.fl_str_mv PUCRS
dc.publisher.country.fl_str_mv BR
dc.publisher.department.fl_str_mv Faculdade de Bioci?ncias
publisher.none.fl_str_mv Pontif?cia Universidade Cat?lica do Rio Grande do Sul
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações da PUC_RS
instname:Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)
instacron:PUC_RS
instname_str Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)
instacron_str PUC_RS
institution PUC_RS
reponame_str Biblioteca Digital de Teses e Dissertações da PUC_RS
collection Biblioteca Digital de Teses e Dissertações da PUC_RS
bitstream.url.fl_str_mv http://tede2.pucrs.br/tede2/bitstream/tede/5462/3/448547.pdf.jpg
http://tede2.pucrs.br/tede2/bitstream/tede/5462/2/448547.pdf.txt
http://tede2.pucrs.br/tede2/bitstream/tede/5462/1/448547.pdf
bitstream.checksum.fl_str_mv fac380ab9c65609f19b5e6d4b4f0010c
93b7092d8f5def8dd0b6bc12520b9744
65aa603337ed5626e1f7e96bf42a9364
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da PUC_RS - Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)
repository.mail.fl_str_mv biblioteca.central@pucrs.br||
_version_ 1796793210086883328