Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares
| Ano de defesa: | 2014 |
|---|---|
| Autor(a) principal: | |
| Orientador(a): | |
| Banca de defesa: | |
| Tipo de documento: | Dissertação |
| Tipo de acesso: | Acesso aberto |
| Idioma: | por |
| Instituição de defesa: |
Universidade Federal de São Carlos
Câmpus Sorocaba |
| Programa de Pós-Graduação: |
Programa de Pós-Graduação em Diversidade Biológica e Conservação - PPGDBC-So
|
| Departamento: |
Não Informado pela instituição
|
| País: |
Não Informado pela instituição
|
| Palavras-chave em Português: | |
| Palavras-chave em Inglês: | |
| Área do conhecimento CNPq: | |
| Link de acesso: | https://repositorio.ufscar.br/handle/20.500.14289/8596 |
Resumo: | The Cryptonanus genus, in Didelphidae family, is currently constituted by five recognized species restricted to the open vegetation areas of South America: C. agricolai, C. chacoensis, C. guahybae, C. ignitus e C. unduaviensis. Morphological analyses on specimens from Cerrado, Caatinga and Pantanal, indicate the need of taxonomic revision for this group, especially considering its wide range of phenotypic variation and geographic distribution. This study aims to contribute in Cryptonanus species delimitation by evaluating possible patterns of intra and interspecific genetic variation, by the analysis of the phylogenetic relationships from the genetic lineages and their geographic distribution. Combined analysis using mtDNA potentially informative sequences, from cytochrome b (cytb) and subunit I of cytochrome oxidase c (coI) genes, were performed for 51 Cryptonanus specimens, in addition to independent analysis of each marker, 64 specimens for cytb and 54 for coI, sampling a total of 42 localities in South America. Genetic distances were estimated based on a DNA barcode approach. Phylogenetic relationships were retrieved from the results of Maximum Parsimony, Maximum Likelihood and Bayesian Inference methods. The topologies recovered were congruent relative to the position of the genus Cryptonanus as a monophyletic cluster, subdivided in nine clades. Regarding species delimitation, two evolutionary hypotheses were tested: 1- the maintenance of four from five valid taxa (except C. ignitus, since this species was not included in the analyses), based on the characterization of intraspecific genetic variation ranged from 0 to 5,3% (cytb) and from 0 to 5,1% (coI), while interspecific variation ranging from 4,1 to 13,2% (cytb) and from 4,7 to 9,6% (coI), related with genetically structured populations in C. agricolai and C. chacoensis clusters; 2- extended biological diversity, related with the identification of five new species besides the five currently recognized. On this scenario, intraspecific genetic variation ranges from 0 to 2,4% (cytb) and from 0 to 3% (coI), while interespecific variation ranges from 2,1 to 13,2% for cytb and 1,6 to 9,6% for coI. The hypothesis 2 is argued to provide a better picture for species delimitation in Cryptonanus, based on the congruence between geographic structure, intra and interspecific genetic variation ranges and the recovery of reciprocal monophyletic genetic lineages in every phylogenetic analyses. |
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Fegies, Ana ClaudiaCarmignotto, Ana Paulahttp://lattes.cnpq.br/0633095503285315http://lattes.cnpq.br/890658552625760880d3475a-ef98-43a4-8b0e-e9eb8d5248ac2017-03-21T19:02:47Z2017-03-21T19:02:47Z2014-03-06FEGIES, Ana Claudia. Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares. 2014. Dissertação (Mestrado em Diversidade Biológica e Conservação) – Universidade Federal de São Carlos, Sorocaba, 2014. Disponível em: https://repositorio.ufscar.br/handle/20.500.14289/8596.https://repositorio.ufscar.br/handle/20.500.14289/8596The Cryptonanus genus, in Didelphidae family, is currently constituted by five recognized species restricted to the open vegetation areas of South America: C. agricolai, C. chacoensis, C. guahybae, C. ignitus e C. unduaviensis. Morphological analyses on specimens from Cerrado, Caatinga and Pantanal, indicate the need of taxonomic revision for this group, especially considering its wide range of phenotypic variation and geographic distribution. This study aims to contribute in Cryptonanus species delimitation by evaluating possible patterns of intra and interspecific genetic variation, by the analysis of the phylogenetic relationships from the genetic lineages and their geographic distribution. Combined analysis using mtDNA potentially informative sequences, from cytochrome b (cytb) and subunit I of cytochrome oxidase c (coI) genes, were performed for 51 Cryptonanus specimens, in addition to independent analysis of each marker, 64 specimens for cytb and 54 for coI, sampling a total of 42 localities in South America. Genetic distances were estimated based on a DNA barcode approach. Phylogenetic relationships were retrieved from the results of Maximum Parsimony, Maximum Likelihood and Bayesian Inference methods. The topologies recovered were congruent relative to the position of the genus Cryptonanus as a monophyletic cluster, subdivided in nine clades. Regarding species delimitation, two evolutionary hypotheses were tested: 1- the maintenance of four from five valid taxa (except C. ignitus, since this species was not included in the analyses), based on the characterization of intraspecific genetic variation ranged from 0 to 5,3% (cytb) and from 0 to 5,1% (coI), while interspecific variation ranging from 4,1 to 13,2% (cytb) and from 4,7 to 9,6% (coI), related with genetically structured populations in C. agricolai and C. chacoensis clusters; 2- extended biological diversity, related with the identification of five new species besides the five currently recognized. On this scenario, intraspecific genetic variation ranges from 0 to 2,4% (cytb) and from 0 to 3% (coI), while interespecific variation ranges from 2,1 to 13,2% for cytb and 1,6 to 9,6% for coI. The hypothesis 2 is argued to provide a better picture for species delimitation in Cryptonanus, based on the congruence between geographic structure, intra and interspecific genetic variation ranges and the recovery of reciprocal monophyletic genetic lineages in every phylogenetic analyses.O gênero Cryptonanus, pertencente à família Didelphidae, é composto por cinco espécies válidas, restritas às formações abertas da América do Sul: C. agricolai, C. chacoensis, C. guahybae, C. ignitus e C. unduaviensis. De acordo com análises morfológicas de espécimes do Cerrado, Caatinga e Pantanal, é necessária uma revisão taxonômica do grupo, considerando todo o espectro de variação morfológica encontrada e a amplitude da distribuição geográfica. Este estudo tem como objetivo auxiliar na delimitação das espécies de Cryptonanus a partir da avaliação de possíveis padrões de distribuição da variação genética intra e interespecífica, da análise das relações filogenéticas obtidas entre as diferentes linhagens genéticas e da distribuição geográfica destas linhagens. Devido ao seu potencial informativo em estudos de delimitação taxonômica, foram realizadas análises combinadas de sequências dos genes citocromo b (cytb, 781 pb) e subunidade I da citocromo oxidase c (coI, 743 pb) do DNA mitocondrial para um conjunto de 51 espécimes de Cryptonanus, além de análises em separado para cada marcador, 64 espécimes para o cytb e 54 para o coI, amostrando 42 localidades da America do Sul. As estimativas de distância genética foram realizadas em análises utilizando a estratégia de DNA barcode. As relações filogenéticas foram analisadas com base nas inferências resultantes dos métodos de Máxima Parcimônia, Máxima Verossimilhança e Inferência Bayesiana. As topologias obtidas apresentaram resultados congruentes em relação ao posicionamento do gênero Cryptonanus em um agrupamento monofilético, o qual foi subdividido em nove clados. Em relação à delimitação de espécies, foram investigadas duas hipóteses evolutivas: 1- a manutenção de quatro dos cinco táxons válidos (excluindo-se C. ignitus, que não integra este estudo), a partir da caracterização de intervalos de variação genética intraespecífica entre 0 a 5,3% (cytb) e entre 0 a 5,1% (coI) e de variação interespecífica entre 4,1 a 13,2% (cytb) e 4,7 a 9,6% (coI), com estruturação genética nas populações de C. agricolai e C. chacoensis; 2- ampliação da diversidade do gênero com a identificação de cinco novas espécies, além das cinco espécies atualmente válidas, caracterizado por valores de variação intraespecífica entre 0 a 2,4% (cytb) e entre 0 a 3% (coI) e valores de variação interespecífica nos intervalos de 2,1 a 13,2% para cytb e 1,6 a 9,6% para coI. A hipótese 2 é defendida como sendo a condição que melhor representa a delimitação das espécies de Cryptonanus com base na congruência entre a estruturação geográfica, os intervalos de variação genética intra e interespecíficos válidos para outras espécies e a recuperação de linhagens genéticas reciprocamente monofiléticas em todas as análises filogenéticas.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)porUniversidade Federal de São CarlosCâmpus SorocabaPrograma de Pós-Graduação em Diversidade Biológica e Conservação - PPGDBC-SoUFSCarFilogeniaZoologiaMarcador MolecularDelimitação de EspéciesThylamyiniPhylogenyZoologyMolecular MarkerSpecies DelimitationCIENCIAS BIOLOGICAS::ZOOLOGIA::TAXONOMIA DOS GRUPOS RECENTESSistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises molecularesSystematics of the genus Cryptonanus (Didelphimorphia: Didelphidae) based on molecular analyzesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisOnline60060046b7d505-94c0-4850-b549-721d1437a6e1info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARORIGINALFEGIES_Ana_Claudia_2014.pdfFEGIES_Ana_Claudia_2014.pdfapplication/pdf53292518https://repositorio.ufscar.br/bitstreams/7db58d15-d8f6-4f71-aed4-1aef6240598b/download185c39de601cf0257dadd521e8f16898MD51trueAnonymousREADLICENSElicense.txtlicense.txttext/plain; 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| dc.title.por.fl_str_mv |
Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares |
| dc.title.alternative.eng.fl_str_mv |
Systematics of the genus Cryptonanus (Didelphimorphia: Didelphidae) based on molecular analyzes |
| title |
Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares |
| spellingShingle |
Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares Fegies, Ana Claudia Filogenia Zoologia Marcador Molecular Delimitação de Espécies Thylamyini Phylogeny Zoology Molecular Marker Species Delimitation CIENCIAS BIOLOGICAS::ZOOLOGIA::TAXONOMIA DOS GRUPOS RECENTES |
| title_short |
Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares |
| title_full |
Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares |
| title_fullStr |
Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares |
| title_full_unstemmed |
Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares |
| title_sort |
Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares |
| author |
Fegies, Ana Claudia |
| author_facet |
Fegies, Ana Claudia |
| author_role |
author |
| dc.contributor.authorlattes.por.fl_str_mv |
http://lattes.cnpq.br/8906585526257608 |
| dc.contributor.author.fl_str_mv |
Fegies, Ana Claudia |
| dc.contributor.advisor1.fl_str_mv |
Carmignotto, Ana Paula |
| dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/0633095503285315 |
| dc.contributor.authorID.fl_str_mv |
80d3475a-ef98-43a4-8b0e-e9eb8d5248ac |
| contributor_str_mv |
Carmignotto, Ana Paula |
| dc.subject.por.fl_str_mv |
Filogenia Zoologia Marcador Molecular Delimitação de Espécies Thylamyini |
| topic |
Filogenia Zoologia Marcador Molecular Delimitação de Espécies Thylamyini Phylogeny Zoology Molecular Marker Species Delimitation CIENCIAS BIOLOGICAS::ZOOLOGIA::TAXONOMIA DOS GRUPOS RECENTES |
| dc.subject.eng.fl_str_mv |
Phylogeny Zoology Molecular Marker Species Delimitation |
| dc.subject.cnpq.fl_str_mv |
CIENCIAS BIOLOGICAS::ZOOLOGIA::TAXONOMIA DOS GRUPOS RECENTES |
| description |
The Cryptonanus genus, in Didelphidae family, is currently constituted by five recognized species restricted to the open vegetation areas of South America: C. agricolai, C. chacoensis, C. guahybae, C. ignitus e C. unduaviensis. Morphological analyses on specimens from Cerrado, Caatinga and Pantanal, indicate the need of taxonomic revision for this group, especially considering its wide range of phenotypic variation and geographic distribution. This study aims to contribute in Cryptonanus species delimitation by evaluating possible patterns of intra and interspecific genetic variation, by the analysis of the phylogenetic relationships from the genetic lineages and their geographic distribution. Combined analysis using mtDNA potentially informative sequences, from cytochrome b (cytb) and subunit I of cytochrome oxidase c (coI) genes, were performed for 51 Cryptonanus specimens, in addition to independent analysis of each marker, 64 specimens for cytb and 54 for coI, sampling a total of 42 localities in South America. Genetic distances were estimated based on a DNA barcode approach. Phylogenetic relationships were retrieved from the results of Maximum Parsimony, Maximum Likelihood and Bayesian Inference methods. The topologies recovered were congruent relative to the position of the genus Cryptonanus as a monophyletic cluster, subdivided in nine clades. Regarding species delimitation, two evolutionary hypotheses were tested: 1- the maintenance of four from five valid taxa (except C. ignitus, since this species was not included in the analyses), based on the characterization of intraspecific genetic variation ranged from 0 to 5,3% (cytb) and from 0 to 5,1% (coI), while interspecific variation ranging from 4,1 to 13,2% (cytb) and from 4,7 to 9,6% (coI), related with genetically structured populations in C. agricolai and C. chacoensis clusters; 2- extended biological diversity, related with the identification of five new species besides the five currently recognized. On this scenario, intraspecific genetic variation ranges from 0 to 2,4% (cytb) and from 0 to 3% (coI), while interespecific variation ranges from 2,1 to 13,2% for cytb and 1,6 to 9,6% for coI. The hypothesis 2 is argued to provide a better picture for species delimitation in Cryptonanus, based on the congruence between geographic structure, intra and interspecific genetic variation ranges and the recovery of reciprocal monophyletic genetic lineages in every phylogenetic analyses. |
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2014 |
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2014-03-06 |
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2017-03-21T19:02:47Z |
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2017-03-21T19:02:47Z |
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FEGIES, Ana Claudia. Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares. 2014. Dissertação (Mestrado em Diversidade Biológica e Conservação) – Universidade Federal de São Carlos, Sorocaba, 2014. Disponível em: https://repositorio.ufscar.br/handle/20.500.14289/8596. |
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https://repositorio.ufscar.br/handle/20.500.14289/8596 |
| identifier_str_mv |
FEGIES, Ana Claudia. Sistemática do gênero Cryptonanus (Didelphimorphia: Didelphidae) baseada em análises moleculares. 2014. Dissertação (Mestrado em Diversidade Biológica e Conservação) – Universidade Federal de São Carlos, Sorocaba, 2014. Disponível em: https://repositorio.ufscar.br/handle/20.500.14289/8596. |
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https://repositorio.ufscar.br/handle/20.500.14289/8596 |
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por |
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openAccess |
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Universidade Federal de São Carlos Câmpus Sorocaba |
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Programa de Pós-Graduação em Diversidade Biológica e Conservação - PPGDBC-So |
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UFSCar |
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Universidade Federal de São Carlos Câmpus Sorocaba |
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