Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria
| Ano de defesa: | 2020 |
|---|---|
| Autor(a) principal: | |
| Orientador(a): | |
| Banca de defesa: | |
| Tipo de documento: | Dissertação |
| Tipo de acesso: | Acesso aberto |
| Idioma: | por |
| Instituição de defesa: |
Universidade Católica de Brasília
|
| Programa de Pós-Graduação: |
Programa Stricto Sensu em Ciências Genômicas e Biotecnologia
|
| Departamento: |
Escola de Saúde e Medicina
|
| País: |
Brasil
|
| Palavras-chave em Português: | |
| Palavras-chave em Inglês: | |
| Área do conhecimento CNPq: | |
| Link de acesso: | https://bdtd.ucb.br:8443/jspui/handle/tede/2701 |
Resumo: | Acidobacteria physiology and their role in the biogeochemical cycles remain relatively unknown compared to another widespread phylum such as Proteobacteria. Although some studies have focused on carbon usage by Acidobacteria other aspects of their metabolism were neglected as their use of nitrogen or phosphorous. We have previously obtained a few isolates of Acidobacteriia from the Cerrado, which soils are acidic and poor in phosphorous and nitrate. The objective of this work was to investigate the nitrogen metabolism pathways present in the genome of the isolate Telmatobacter sp. AB60, an Acidobacteria from the Class Acidobacteriia. The genome of Telmatobacter sp. AB60 was previously sequenced revealing the presence of six genes involved in assimilatory nitrogen metabolism, such as nasAB e nirA (nitrate and nitrite reductase, respectively). Comparison of the deduced amino acid sequences of NasA and NirA revealed that the Acidobacteria genes more closely related to each other than to any other phylum. Nitrate and nitrite were used as sole nitrogen source separately and in combination, in oxic and anoxic conditions. The isolate AB60 grew on nitrate as sole nitrogen source and lactate as carbon and electron source. Growth was observed both in the presence and absence of oxygen. Assimilative nitrate reduction was observed for the first time in Acidobacteria, since isolate AB60 can use nitrate and lactate for growth and does not release of ammonia in the supernatant of the culture. On the other hand, the use of 2 mM of nitrite as sole nitrogen source inhibited the growth of isolate AB60.The next step of this work will be to test gene regulation in the presence of nitrate and nitrite, to detect other metabolic products during growth, an then broaden our knowledge of the Acidobacteriia´s role in the nitrogen cycle of the Cerrado. |
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Barreto, Cristine Chaveshttp://lattes.cnpq.br/9973148799581550http://lattes.cnpq.br/2604711750939666Moura, Kamila Suellen Paiva de2020-02-21T18:27:04Z2020-08-26MOURA, Kamila Suellen Paiva de. Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria. 2020. 53 f. Dissertação (Programa Stricto Sensu em Ciências Genômicas e Biotecnologia) - Universidade Católica de Brasília, 2019.https://bdtd.ucb.br:8443/jspui/handle/tede/2701Acidobacteria physiology and their role in the biogeochemical cycles remain relatively unknown compared to another widespread phylum such as Proteobacteria. Although some studies have focused on carbon usage by Acidobacteria other aspects of their metabolism were neglected as their use of nitrogen or phosphorous. We have previously obtained a few isolates of Acidobacteriia from the Cerrado, which soils are acidic and poor in phosphorous and nitrate. The objective of this work was to investigate the nitrogen metabolism pathways present in the genome of the isolate Telmatobacter sp. AB60, an Acidobacteria from the Class Acidobacteriia. The genome of Telmatobacter sp. AB60 was previously sequenced revealing the presence of six genes involved in assimilatory nitrogen metabolism, such as nasAB e nirA (nitrate and nitrite reductase, respectively). Comparison of the deduced amino acid sequences of NasA and NirA revealed that the Acidobacteria genes more closely related to each other than to any other phylum. Nitrate and nitrite were used as sole nitrogen source separately and in combination, in oxic and anoxic conditions. The isolate AB60 grew on nitrate as sole nitrogen source and lactate as carbon and electron source. Growth was observed both in the presence and absence of oxygen. Assimilative nitrate reduction was observed for the first time in Acidobacteria, since isolate AB60 can use nitrate and lactate for growth and does not release of ammonia in the supernatant of the culture. On the other hand, the use of 2 mM of nitrite as sole nitrogen source inhibited the growth of isolate AB60.The next step of this work will be to test gene regulation in the presence of nitrate and nitrite, to detect other metabolic products during growth, an then broaden our knowledge of the Acidobacteriia´s role in the nitrogen cycle of the Cerrado.A fisiologia das acidobactérias e o seu papel nos ciclos biogeoquímicos permanecem relativamente desconhecidos em comparação com filos como Proteobacteria, por exemplo. Embora estudos fisiologicos sobre utilização de carbono já tenham sido realizados, outros aspectos do seu metabolismo foram negligenciados como o uso de nitrogênio ou fósforo. Alguns isolados de Acidobacteriia do Cerrado, cujos solos são ácidos e pobres em fósforo e nitrato foram obtidos em estudo anterior. O objetivo do presente trabalho foi estudar a utilização de nitrato por Telmatobacter sp. AB60, uma Acidobacteria da Classe Acidobacteriia. O genoma de Telmatobacter sp. foi previamente sequenciado e a sua análise revelou a presença de seis genes envolvidos na redução assimilativa de nitrato e nitrito, entre eles nasAB e nirA (nitrato e nitrito redutase, respectivamente). A comparação das sequências de aminoácidos deduzidas da subunidade catalitica de NasA e NirA mostrou que os genes de Acidobacteria se relacionam mais intimamente entre si do que com qualquer outro filo. Nitrato e nitrito foram usados separadamente ou em combinação para análise de crescimento, em condições óxicas e anóxicas. O isolado AB60 foi capaz de crescer em nitrato como única fonte de nitrogênio e lactato como fonte de carbono e elétrons, tanto com presença de oxigênio como em ausência. Foi demonstrado pela primeira vez a capacidade de redução assimilativa de Acidobactéria, pois observou-se o consumo de nitrato e lactato durante o crescimento sem a liberação de amonia no sobrenadante. Por outro lado, a concentração de 2 mM de nitrito como unica fonte de nitrogenio foi inibitória para o crescimento de AB60. O próximo passo deste trabalho será verificar a regulação da expressão gênica, detectar outros produtos do metabolismo e ampliar nosso conhecimento sobre o papel da Acidobacteriia no ciclo do nitrogênio do Cerrado.Submitted by Sara Ribeiro (sara.ribeiro@ucb.br) on 2020-02-21T18:26:48Z No. of bitstreams: 1 KamilaSuellenPaivadeMouraDissertacao2019.pdf: 2066624 bytes, checksum: 3a2082bd9a8b66d833a64424c0b48011 (MD5)Approved for entry into archive by Sara Ribeiro (sara.ribeiro@ucb.br) on 2020-02-21T18:27:04Z (GMT) No. of bitstreams: 1 KamilaSuellenPaivadeMouraDissertacao2019.pdf: 2066624 bytes, checksum: 3a2082bd9a8b66d833a64424c0b48011 (MD5)Made available in DSpace on 2020-02-21T18:27:04Z (GMT). No. of bitstreams: 1 KamilaSuellenPaivadeMouraDissertacao2019.pdf: 2066624 bytes, checksum: 3a2082bd9a8b66d833a64424c0b48011 (MD5) Previous issue date: 2020-08-26application/pdfhttps://200.214.135.178:8443/jspui/retrieve/6926/KamilaSuellenPaivadeMouraDissertacao2019.pdf.jpgporUniversidade Católica de BrasíliaPrograma Stricto Sensu em Ciências Genômicas e BiotecnologiaUCBBrasilEscola de Saúde e MedicinaAcidobacteriaCiclo do nitrogênioNitrogen cycleAcidobacteriaCNPQ::CIENCIAS BIOLOGICASUtilização de nitrato por Telmatobacter sp. 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| dc.title.por.fl_str_mv |
Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria |
| title |
Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria |
| spellingShingle |
Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria Moura, Kamila Suellen Paiva de Acidobacteria Ciclo do nitrogênio Nitrogen cycle Acidobacteria CNPQ::CIENCIAS BIOLOGICAS |
| title_short |
Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria |
| title_full |
Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria |
| title_fullStr |
Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria |
| title_full_unstemmed |
Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria |
| title_sort |
Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria |
| author |
Moura, Kamila Suellen Paiva de |
| author_facet |
Moura, Kamila Suellen Paiva de |
| author_role |
author |
| dc.contributor.advisor1.fl_str_mv |
Barreto, Cristine Chaves |
| dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/9973148799581550 |
| dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/2604711750939666 |
| dc.contributor.author.fl_str_mv |
Moura, Kamila Suellen Paiva de |
| contributor_str_mv |
Barreto, Cristine Chaves |
| dc.subject.por.fl_str_mv |
Acidobacteria Ciclo do nitrogênio |
| topic |
Acidobacteria Ciclo do nitrogênio Nitrogen cycle Acidobacteria CNPQ::CIENCIAS BIOLOGICAS |
| dc.subject.eng.fl_str_mv |
Nitrogen cycle Acidobacteria |
| dc.subject.cnpq.fl_str_mv |
CNPQ::CIENCIAS BIOLOGICAS |
| description |
Acidobacteria physiology and their role in the biogeochemical cycles remain relatively unknown compared to another widespread phylum such as Proteobacteria. Although some studies have focused on carbon usage by Acidobacteria other aspects of their metabolism were neglected as their use of nitrogen or phosphorous. We have previously obtained a few isolates of Acidobacteriia from the Cerrado, which soils are acidic and poor in phosphorous and nitrate. The objective of this work was to investigate the nitrogen metabolism pathways present in the genome of the isolate Telmatobacter sp. AB60, an Acidobacteria from the Class Acidobacteriia. The genome of Telmatobacter sp. AB60 was previously sequenced revealing the presence of six genes involved in assimilatory nitrogen metabolism, such as nasAB e nirA (nitrate and nitrite reductase, respectively). Comparison of the deduced amino acid sequences of NasA and NirA revealed that the Acidobacteria genes more closely related to each other than to any other phylum. Nitrate and nitrite were used as sole nitrogen source separately and in combination, in oxic and anoxic conditions. The isolate AB60 grew on nitrate as sole nitrogen source and lactate as carbon and electron source. Growth was observed both in the presence and absence of oxygen. Assimilative nitrate reduction was observed for the first time in Acidobacteria, since isolate AB60 can use nitrate and lactate for growth and does not release of ammonia in the supernatant of the culture. On the other hand, the use of 2 mM of nitrite as sole nitrogen source inhibited the growth of isolate AB60.The next step of this work will be to test gene regulation in the presence of nitrate and nitrite, to detect other metabolic products during growth, an then broaden our knowledge of the Acidobacteriia´s role in the nitrogen cycle of the Cerrado. |
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2020 |
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2020-02-21T18:27:04Z |
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2020-08-26 |
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MOURA, Kamila Suellen Paiva de. Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria. 2020. 53 f. Dissertação (Programa Stricto Sensu em Ciências Genômicas e Biotecnologia) - Universidade Católica de Brasília, 2019. |
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MOURA, Kamila Suellen Paiva de. Utilização de nitrato por Telmatobacter sp. AB60 Acidobacteria. 2020. 53 f. Dissertação (Programa Stricto Sensu em Ciências Genômicas e Biotecnologia) - Universidade Católica de Brasília, 2019. |
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