Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica

Detalhes bibliográficos
Ano de defesa: 2023
Autor(a) principal: Sales, Rodrigo Mauricio Marinsek lattes
Orientador(a): Quirino, Betania Ferraz lattes
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Católica de Brasília
Programa de Pós-Graduação: Programa Stricto Sensu em Ciências Genômicas e Biotecnologia
Departamento: Escola de Saúde e Medicina
País: Brasil
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: https://bdtd.ucb.br:8443/jspui/handle/tede/3338
Resumo: Lignocellulosic biomass is composed of three main polymers, which are cellulose, hemicellulose and lignin, with cellulose being the most abundant organic compound in nature and lignin being the most abundant phenolic compound in nature. The depolymerization of this renewable raw material is the first step towards obtaining chemical compounds of industrial interest and one of the most promising technologies for this deconstruction involves the use of enzymes. The identification of new enzymes with high potential for the deconstruction of biomass favors the development of environmentally benign processes. With metagenomic approaches and molecular biology techniques, it is possible to explore the microbial diversity (culturable and non-culturable) of different environments and thus find enzymes with biotechnological potential for biomass degradation. The objective of this work was to express, purify and biochemically characterize a β-glucosidase with biotechnological potential for the industrial market and to carry out amplification and cloning in an expression vector of at least one ligninase. β-glucosidase (Bgl08) was produced from a goat rumen metagenomic library constructed in previous studies by the Embrapa Agroenergia research team and presented the following characteristics: 1) activity against the substrates pNPG, pNPX, cellobiose and salicin; 2) optimum temperature of 45 °C; 3) optimum pH of 6.0; 4) Vmax(pNPG) of 3.10-6 mmol/min (U) and Km of 1.83 mM ± 0.26; 5) Vmax (cellobiose) 7.05.10- 3 mmol/min (U) and Km of 7.49 mM ± 1.59. The search for ligninase was carried out using microbial consortia using the lignin enrichment technique. With the total DNA extracted from this consortium, a metagenomic library was constructed and three pairs of primers corresponding to Dyp enzymes and five pairs of primers corresponding to SOD enzymes were designed and synthesized so that these genes could be amplified and cloned into expression vectors.
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spelling Quirino, Betania Ferrazhttp://lattes.cnpq.br/3916535995785654Bergmann, Jéssica Carvalhohttp://lattes.cnpq.br/2939768157101250http://lattes.cnpq.br/9169916520962863Sales, Rodrigo Mauricio Marinsek2023-11-27T17:48:14Z2023-08-30SALES, Rodrigo Mauricio Marinsek. Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica. 2023. 69 f. Dissertação (Programa Stricto Sensu em Ciências Genômicas e Biotecnologia) - Universidade Católica de Brasília, Brasília, 2023.https://bdtd.ucb.br:8443/jspui/handle/tede/3338Lignocellulosic biomass is composed of three main polymers, which are cellulose, hemicellulose and lignin, with cellulose being the most abundant organic compound in nature and lignin being the most abundant phenolic compound in nature. The depolymerization of this renewable raw material is the first step towards obtaining chemical compounds of industrial interest and one of the most promising technologies for this deconstruction involves the use of enzymes. The identification of new enzymes with high potential for the deconstruction of biomass favors the development of environmentally benign processes. With metagenomic approaches and molecular biology techniques, it is possible to explore the microbial diversity (culturable and non-culturable) of different environments and thus find enzymes with biotechnological potential for biomass degradation. The objective of this work was to express, purify and biochemically characterize a β-glucosidase with biotechnological potential for the industrial market and to carry out amplification and cloning in an expression vector of at least one ligninase. β-glucosidase (Bgl08) was produced from a goat rumen metagenomic library constructed in previous studies by the Embrapa Agroenergia research team and presented the following characteristics: 1) activity against the substrates pNPG, pNPX, cellobiose and salicin; 2) optimum temperature of 45 °C; 3) optimum pH of 6.0; 4) Vmax(pNPG) of 3.10-6 mmol/min (U) and Km of 1.83 mM ± 0.26; 5) Vmax (cellobiose) 7.05.10- 3 mmol/min (U) and Km of 7.49 mM ± 1.59. The search for ligninase was carried out using microbial consortia using the lignin enrichment technique. With the total DNA extracted from this consortium, a metagenomic library was constructed and three pairs of primers corresponding to Dyp enzymes and five pairs of primers corresponding to SOD enzymes were designed and synthesized so that these genes could be amplified and cloned into expression vectors.A biomassa lignocelulósica é composta por três principais polímeros, que são a celulose, a hemicelulose e a lignina, sendo a celulose o composto orgânico mais abundante na natureza e a lignina o composto fenólico mais abundante na natureza. A despolimerização dessa matéria-prima renovável é o primeiro passo para a obtenção de compostos químicos de interesse industrial e uma das tecnologias mais promissoras para essa desconstrução envolve o uso de enzimas. A identificação de novas enzimas com elevado potencial para a desconstrução de biomassa favorece o desenvolvimento de processos ambientalmente benignos. Com abordagens metagenômicas e técnicas de biologia molecular é possível explorar a diversidade microbiana (cultivável e não cultivável) de diferentes ambientes e assim encontrar enzimas com potencial biotecnológico para a degradação de biomassa. O objetivo desse trabalho foi expressar, purificar e caracterizar bioquimicamente uma βglicosidase com potencial biotecnológico para o mercado industrial e realizar a amplificação e clonagem em vetor de expressão de ao menos uma ligninase. A β-glicosidase (Bgl08) foi produzida a partir de uma biblioteca metagenômica de rúmen de caprino construída em estudos anteriores pela equipe de pesquisa da Embrapa Agroenergia e apresentou as seguintes característica: 1) atividade contra os substratos pNPG, pNPX, celobiose e salicina; 2) temperatura ótima de 45 °C; 3) pH ótimo de 6,0; 4) Vmax(pNPG) de 3.10-6 mmol/min (U) e Km de 1,83 mM ± 0,26; 5) Vmax(celobiose) 7,05.10-3 mmol/min (U) e Km de 7,49 mM ± 1,59. Já a busca por ligninase foi feita a partir de consórcios microbianos aplicando-se a técnica de enriquecimento com lignina. Com o DNA total extraído deste consórcio, uma biblioteca metagenômica foi construída e três pares de primers correspondentes a enzimas Dyp e cinco pares de primers correspondentes a enzimas SOD foram desenhados e sintetizados para que se pudesse realizar a amplificação destes genes e cloná-los em vetores de expressão.Submitted by Ihorranna Oliveira (ihorranna.oliveira@ucb.br) on 2023-11-13T17:29:41Z No. of bitstreams: 1 RodrigoMauricioDissertacaoParcial2023.pdf: 897485 bytes, checksum: cae629c34900fd69099f772c6d599c1b (MD5)Approved for entry into archive by Sara Ribeiro (sara.ribeiro@ucb.br) on 2023-11-27T17:48:14Z (GMT) No. of bitstreams: 1 RodrigoMauricioDissertacaoParcial2023.pdf: 897485 bytes, checksum: cae629c34900fd69099f772c6d599c1b (MD5)Made available in DSpace on 2023-11-27T17:48:14Z (GMT). No. of bitstreams: 1 RodrigoMauricioDissertacaoParcial2023.pdf: 897485 bytes, checksum: cae629c34900fd69099f772c6d599c1b (MD5) Previous issue date: 2023-08-30application/pdfhttps://bdtd.ucb.br:8443/jspui/retrieve/11485/RodrigoMauricioDissertacaoParcial2023.pdf.jpgporUniversidade Católica de BrasíliaPrograma Stricto Sensu em Ciências Genômicas e BiotecnologiaUCBBrasilEscola de Saúde e MedicinaAcesso Parcialinfo:eu-repo/semantics/openAccessMetagenomaLigninasesβ-glicosidasesBiomassaMetagenomeLigninasesBiomassCNPQ::CIENCIAS BIOLOGICASProspecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômicainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisreponame:Biblioteca Digital de Teses e Dissertações da UCBinstname:Universidade Católica de Brasília (UCB)instacron:UCBLICENSElicense.txtlicense.txttext/plain; charset=utf-81905https://bdtd.ucb.br:8443/jspui/bitstream/tede/3338/1/license.txt75558dcf859532757239878b42f1c2c7MD51ORIGINALRodrigoMauricioDissertacaoParcial2023.pdfRodrigoMauricioDissertacaoParcial2023.pdfapplication/pdf897485https://bdtd.ucb.br:8443/jspui/bitstream/tede/3338/2/RodrigoMauricioDissertacaoParcial2023.pdfcae629c34900fd69099f772c6d599c1bMD52TEXTRodrigoMauricioDissertacaoParcial2023.pdf.txtRodrigoMauricioDissertacaoParcial2023.pdf.txttext/plain16043https://bdtd.ucb.br:8443/jspui/bitstream/tede/3338/3/RodrigoMauricioDissertacaoParcial2023.pdf.txt68bd149df9c56b023f8583c1c28b6cbbMD53THUMBNAILRodrigoMauricioDissertacaoParcial2023.pdf.jpgRodrigoMauricioDissertacaoParcial2023.pdf.jpgimage/jpeg3371https://bdtd.ucb.br:8443/jspui/bitstream/tede/3338/4/RodrigoMauricioDissertacaoParcial2023.pdf.jpg025fc6586816ba276379c68a8fe7f0adMD54tede/33382023-11-28 13:02:08.241oai:bdtd.ucb.br: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 Digital de Teses e Dissertaçõeshttps://bdtd.ucb.br:8443/jspui/PRIhttps://bdtd.ucb.br:8443/oai/requestsdi@ucb.bropendoar:47812023-11-28T13:02:08Biblioteca Digital de Teses e Dissertações da UCB - Universidade Católica de Brasília (UCB)false
dc.title.por.fl_str_mv Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica
title Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica
spellingShingle Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica
Sales, Rodrigo Mauricio Marinsek
Metagenoma
Ligninases
β-glicosidases
Biomassa
Metagenome
Ligninases
Biomass
CNPQ::CIENCIAS BIOLOGICAS
title_short Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica
title_full Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica
title_fullStr Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica
title_full_unstemmed Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica
title_sort Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica
author Sales, Rodrigo Mauricio Marinsek
author_facet Sales, Rodrigo Mauricio Marinsek
author_role author
dc.contributor.advisor1.fl_str_mv Quirino, Betania Ferraz
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/3916535995785654
dc.contributor.advisor-co1.fl_str_mv Bergmann, Jéssica Carvalho
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/2939768157101250
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/9169916520962863
dc.contributor.author.fl_str_mv Sales, Rodrigo Mauricio Marinsek
contributor_str_mv Quirino, Betania Ferraz
Bergmann, Jéssica Carvalho
dc.subject.por.fl_str_mv Metagenoma
Ligninases
β-glicosidases
Biomassa
topic Metagenoma
Ligninases
β-glicosidases
Biomassa
Metagenome
Ligninases
Biomass
CNPQ::CIENCIAS BIOLOGICAS
dc.subject.eng.fl_str_mv Metagenome
Ligninases
Biomass
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS BIOLOGICAS
description Lignocellulosic biomass is composed of three main polymers, which are cellulose, hemicellulose and lignin, with cellulose being the most abundant organic compound in nature and lignin being the most abundant phenolic compound in nature. The depolymerization of this renewable raw material is the first step towards obtaining chemical compounds of industrial interest and one of the most promising technologies for this deconstruction involves the use of enzymes. The identification of new enzymes with high potential for the deconstruction of biomass favors the development of environmentally benign processes. With metagenomic approaches and molecular biology techniques, it is possible to explore the microbial diversity (culturable and non-culturable) of different environments and thus find enzymes with biotechnological potential for biomass degradation. The objective of this work was to express, purify and biochemically characterize a β-glucosidase with biotechnological potential for the industrial market and to carry out amplification and cloning in an expression vector of at least one ligninase. β-glucosidase (Bgl08) was produced from a goat rumen metagenomic library constructed in previous studies by the Embrapa Agroenergia research team and presented the following characteristics: 1) activity against the substrates pNPG, pNPX, cellobiose and salicin; 2) optimum temperature of 45 °C; 3) optimum pH of 6.0; 4) Vmax(pNPG) of 3.10-6 mmol/min (U) and Km of 1.83 mM ± 0.26; 5) Vmax (cellobiose) 7.05.10- 3 mmol/min (U) and Km of 7.49 mM ± 1.59. The search for ligninase was carried out using microbial consortia using the lignin enrichment technique. With the total DNA extracted from this consortium, a metagenomic library was constructed and three pairs of primers corresponding to Dyp enzymes and five pairs of primers corresponding to SOD enzymes were designed and synthesized so that these genes could be amplified and cloned into expression vectors.
publishDate 2023
dc.date.accessioned.fl_str_mv 2023-11-27T17:48:14Z
dc.date.issued.fl_str_mv 2023-08-30
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dc.identifier.citation.fl_str_mv SALES, Rodrigo Mauricio Marinsek. Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica. 2023. 69 f. Dissertação (Programa Stricto Sensu em Ciências Genômicas e Biotecnologia) - Universidade Católica de Brasília, Brasília, 2023.
dc.identifier.uri.fl_str_mv https://bdtd.ucb.br:8443/jspui/handle/tede/3338
identifier_str_mv SALES, Rodrigo Mauricio Marinsek. Prospecção e caracterização de enzimas envolvidas na desconstrução de biomassa a partir de abordagem metagenômica. 2023. 69 f. Dissertação (Programa Stricto Sensu em Ciências Genômicas e Biotecnologia) - Universidade Católica de Brasília, Brasília, 2023.
url https://bdtd.ucb.br:8443/jspui/handle/tede/3338
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