Planejamento e avalia??o de novos compostos com atividade antimal?rica
| Ano de defesa: | 2024 |
|---|---|
| Autor(a) principal: | |
| Orientador(a): | |
| Banca de defesa: | |
| Tipo de documento: | Dissertação |
| Tipo de acesso: | Acesso aberto |
| Idioma: | por |
| Instituição de defesa: |
Universidade Estadual de Feira de Santana
|
| Programa de Pós-Graduação: |
Doutorado Acad?mico em Biotecnologia
|
| Departamento: |
DEPARTAMENTO DE TECNOLOGIA
|
| País: |
Brasil
|
| Palavras-chave em Português: | |
| Palavras-chave em Inglês: | |
| Área do conhecimento CNPq: | |
| Link de acesso: | http://tede2.uefs.br:8080/handle/tede/1820 |
Resumo: | Malaria continues to be a disease with major public health impacts with approximately 608,000 deaths in 2022 and limited chemotherapy. Therefore, the development of drugs with new mechanisms of action through the study of validated and/or exclusive therapeutic targets of the parasite such as Enoyl-ACP reductase (ENR) and dihydroorotate dehydrogenase (DHODH) becomes an emergency. In drug development, drug repositioning studies and the use of computational strategies can help prioritize promising molecules for biological trials. In this sense, the study proposes the use of experimental and computational data to assist in the prioritization of molecules present in drug databases (DrugBank and Sigma-Aldrich) through hierarchical virtual screening (HVS ? pharmacophoric models and molecular docking) for phenotypic tests. Initially, a series of 19 thiazolidine derivatives with antimalarial activity (0.118 - 0.414 ?M) were used to construct and validate pharmacophore models. After the TVH steps, ZINC61493 (Z61493) was selected based on the search parameters defined for DHODH of Plasmodium falciparum (PfDHODH) and sent for molecular dynamics (MD) studies. Subsequently, molecules from the DrugBank database were evaluated using a protocol defined in previous studies (pharmacophore model for ENR of P. falciparum inhibitors (PfENR) and molecular docking). In the tests, nitrofurantoin showed the best antiplasmodial activity profile (13.92 ?M). In order to improve its permeability profile against the parasite's biological membranes, permeability studies in a lipid bilayer model through MD simulations were carried out with nitrofurantoin and its derivatives. Molecules 14, 18, 21 and Z61493 showed lower free energy values than nitrofurantoin when crossing the lipid bilayer. The feasibility of synthesizing molecules 14, 18, 21 can be evaluated in order to forward them to phenotypic tests. |
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Leite, Franco Henrique Andradehttps://orcid.org/0000-0003-3166-6051http://lattes.cnpq.br/6921231386745339Varotti, Fernando de Pillahttps://orcid.org/0009-0008-6954-6796http://lattes.cnpq.br/2554556657763879Costa J?nior, David Bacelar2025-05-29T20:27:47Z2024-05-15COSTA J?NIOR, David Bacelar. Planejamento e avalia??o de novos compostos com atividade antimal?rica, 2024, 100 f., Disserta??o (doutorado) - Programa de P?s-Gradua??o em Biotecnologia, Universidade Estadual de Feira de Santana, Feira de Santana.http://tede2.uefs.br:8080/handle/tede/1820Malaria continues to be a disease with major public health impacts with approximately 608,000 deaths in 2022 and limited chemotherapy. Therefore, the development of drugs with new mechanisms of action through the study of validated and/or exclusive therapeutic targets of the parasite such as Enoyl-ACP reductase (ENR) and dihydroorotate dehydrogenase (DHODH) becomes an emergency. In drug development, drug repositioning studies and the use of computational strategies can help prioritize promising molecules for biological trials. In this sense, the study proposes the use of experimental and computational data to assist in the prioritization of molecules present in drug databases (DrugBank and Sigma-Aldrich) through hierarchical virtual screening (HVS ? pharmacophoric models and molecular docking) for phenotypic tests. Initially, a series of 19 thiazolidine derivatives with antimalarial activity (0.118 - 0.414 ?M) were used to construct and validate pharmacophore models. After the TVH steps, ZINC61493 (Z61493) was selected based on the search parameters defined for DHODH of Plasmodium falciparum (PfDHODH) and sent for molecular dynamics (MD) studies. Subsequently, molecules from the DrugBank database were evaluated using a protocol defined in previous studies (pharmacophore model for ENR of P. falciparum inhibitors (PfENR) and molecular docking). In the tests, nitrofurantoin showed the best antiplasmodial activity profile (13.92 ?M). In order to improve its permeability profile against the parasite's biological membranes, permeability studies in a lipid bilayer model through MD simulations were carried out with nitrofurantoin and its derivatives. Molecules 14, 18, 21 and Z61493 showed lower free energy values than nitrofurantoin when crossing the lipid bilayer. The feasibility of synthesizing molecules 14, 18, 21 can be evaluated in order to forward them to phenotypic tests.A mal?ria ? uma doen?a com grandes impactos em sa?de p?blica com aproximadamente 608.000 mortes em 2022. Apesar disso, a quimioterapia antimal?rica ? limitada. Diante disso, torna-se emergencial o desenvolvimento de f?rmacos com novos mecanismos de a??o atrav?s do estudo de alvos terap?uticos validados e/ou exclusivos do parasito como a Enoil-ACP redutase (ENR) e a diidroorotato desidrogenase (DHODH). Os estudos de reposicionamento de f?rmacos e a utiliza??o de estrat?gias computacionais podem auxiliar na prioriza??o de mol?culas promissoras para os ensaios biol?gicos. Nesse sentido, este estudo prop?e a utiliza??o de dados experimentais e computacionais para auxiliar na prioriza??o de mol?culas presentes em base de dados de f?rmacos (DrugBank e Sigma-Aldrich) atrav?s de triagem virtual hier?rquica (TVH ? modelos farmacof?ricos e acoplamento molecular) para testes fenot?picos. Inicialmente, uma s?rie de 19 derivados tiazolidina com atividade antimal?ria (0,118 - 0,414 ?M) foram utilizadas para constru??o e valida??o de modelos farmacof?ricos. Ap?s as etapas de TVH, ZINC61493 (Z61493) foi selecionada com base nos par?metros de busca definidos para DHODH de Plasmodium falciparum (PfDHODH) e encaminhada para estudos de din?mica molecular (DM). Posteriormente, mol?culas oriundas da base de dados DrugBank foram avaliadas atrav?s de protocolo definido em estudos anteriores (modelo farmacof?rico para inibidores da ENR de P. falciparum (PfENR) e acoplamento molecular). Nos ensaios, a nitrofuranto?na apresentou o melhor perfil de atividade antiplasmodial (13,92 ?M). No intuito de melhorar seu perfil de permeabilidade frente as membranas biol?gicas do parasito, estudos de permeabilidade em modelo de bicamada lip?dica atrav?s de simula??es de DM foi realizado com a nitrofuranto?na e seus derivados. As mol?culas 14, 18, 21 e Z61493 apresentaram menores valores de energia livre que a nitrofuranto?na ao cruzar a bicamada lip?dica. A viabilidade de s?ntese das mol?culas 14, 18, 21 pode ser avalia??o a fim de encaminhar a ensaios fenot?picos.Submitted by Daniela Costa (dmscosta@uefs.br) on 2025-05-29T20:27:47Z No. of bitstreams: 1 DAVID BACELAR COSTA J?NIOR - Tese.pdf: 4148441 bytes, checksum: 4a36ae3d1d5b17bafac5d385331e539d (MD5)Made available in DSpace on 2025-05-29T20:27:47Z (GMT). No. of bitstreams: 1 DAVID BACELAR COSTA J?NIOR - Tese.pdf: 4148441 bytes, checksum: 4a36ae3d1d5b17bafac5d385331e539d (MD5) Previous issue date: 2024-05-15Funda??o de Amparo ? Pesquisa do Estado da Bahia - FAPEBapplication/pdfhttp://tede2.uefs.br:8080/retrieve/7680/DAVID%20BACELAR%20COSTA%20J%c3%9aNIOR%20-%20Tese.pdf.jpgporUniversidade Estadual de Feira de SantanaDoutorado Acad?mico em BiotecnologiaUEFSBrasilDEPARTAMENTO DE TECNOLOGIAAcoplamento molecularEnoil-ACP reductaseModelo farmacof?ricoTriagem VirtualPlasmodium falciparumEnoyl-ACP reductaseMolecular dockingVirtual ScreeningPharmacophore modelPlasmodium falciparumTECNOLOGIA QUIMICA::MEDICAMENTOSPlanejamento e avalia??o de novos compostos com atividade antimal?ricainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-681526922978979154360060060060043351085230203470515895463188098589603-8233071094704392586info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UEFSinstname:Universidade Estadual de Feira de Santana (UEFS)instacron:UEFSTHUMBNAILDAVID BACELAR COSTA J?NIOR - Tese.pdf.jpgDAVID BACELAR COSTA J?NIOR - Tese.pdf.jpgimage/jpeg3310http://tede2.uefs.br:8080/bitstream/tede/1820/4/DAVID+BACELAR+COSTA+J%C3%9ANIOR+-+Tese.pdf.jpgc18ef34eacb878e9dc2b1ecf9a5ee6efMD54TEXTDAVID BACELAR COSTA J?NIOR - Tese.pdf.txtDAVID BACELAR COSTA J?NIOR - Tese.pdf.txttext/plain211456http://tede2.uefs.br:8080/bitstream/tede/1820/3/DAVID+BACELAR+COSTA+J%C3%9ANIOR+-+Tese.pdf.txtfd4fc42e1f019995ee6a9dcf07d066ffMD53ORIGINALDAVID BACELAR COSTA J?NIOR - Tese.pdfDAVID BACELAR COSTA J?NIOR - Tese.pdfapplication/pdf4148441http://tede2.uefs.br:8080/bitstream/tede/1820/2/DAVID+BACELAR+COSTA+J%C3%9ANIOR+-+Tese.pdf4a36ae3d1d5b17bafac5d385331e539dMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82089http://tede2.uefs.br:8080/bitstream/tede/1820/1/license.txt7b5ba3d2445355f386edab96125d42b7MD51tede/18202025-09-10 01:41:41.377oai:tede2.uefs.br:8080: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Biblioteca Digital de Teses e Dissertaçõeshttp://tede2.uefs.br:8080/PUBhttp://tede2.uefs.br:8080/oai/requestbcuefs@uefs.br|| bcref@uefs.br||bcuefs@uefs.bropendoar:2025-09-10T04:41:41Biblioteca Digital de Teses e Dissertações da UEFS - Universidade Estadual de Feira de Santana (UEFS)false |
| dc.title.por.fl_str_mv |
Planejamento e avalia??o de novos compostos com atividade antimal?rica |
| title |
Planejamento e avalia??o de novos compostos com atividade antimal?rica |
| spellingShingle |
Planejamento e avalia??o de novos compostos com atividade antimal?rica Costa J?nior, David Bacelar Acoplamento molecular Enoil-ACP reductase Modelo farmacof?rico Triagem Virtual Plasmodium falciparum Enoyl-ACP reductase Molecular docking Virtual Screening Pharmacophore model Plasmodium falciparum TECNOLOGIA QUIMICA::MEDICAMENTOS |
| title_short |
Planejamento e avalia??o de novos compostos com atividade antimal?rica |
| title_full |
Planejamento e avalia??o de novos compostos com atividade antimal?rica |
| title_fullStr |
Planejamento e avalia??o de novos compostos com atividade antimal?rica |
| title_full_unstemmed |
Planejamento e avalia??o de novos compostos com atividade antimal?rica |
| title_sort |
Planejamento e avalia??o de novos compostos com atividade antimal?rica |
| author |
Costa J?nior, David Bacelar |
| author_facet |
Costa J?nior, David Bacelar |
| author_role |
author |
| dc.contributor.advisor1.fl_str_mv |
Leite, Franco Henrique Andrade |
| dc.contributor.advisor1ID.fl_str_mv |
https://orcid.org/0000-0003-3166-6051 |
| dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/6921231386745339 |
| dc.contributor.advisor-co1.fl_str_mv |
Varotti, Fernando de Pilla |
| dc.contributor.authorID.fl_str_mv |
https://orcid.org/0009-0008-6954-6796 |
| dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/2554556657763879 |
| dc.contributor.author.fl_str_mv |
Costa J?nior, David Bacelar |
| contributor_str_mv |
Leite, Franco Henrique Andrade Varotti, Fernando de Pilla |
| dc.subject.por.fl_str_mv |
Acoplamento molecular Enoil-ACP reductase Modelo farmacof?rico Triagem Virtual Plasmodium falciparum |
| topic |
Acoplamento molecular Enoil-ACP reductase Modelo farmacof?rico Triagem Virtual Plasmodium falciparum Enoyl-ACP reductase Molecular docking Virtual Screening Pharmacophore model Plasmodium falciparum TECNOLOGIA QUIMICA::MEDICAMENTOS |
| dc.subject.eng.fl_str_mv |
Enoyl-ACP reductase Molecular docking Virtual Screening Pharmacophore model Plasmodium falciparum |
| dc.subject.cnpq.fl_str_mv |
TECNOLOGIA QUIMICA::MEDICAMENTOS |
| description |
Malaria continues to be a disease with major public health impacts with approximately 608,000 deaths in 2022 and limited chemotherapy. Therefore, the development of drugs with new mechanisms of action through the study of validated and/or exclusive therapeutic targets of the parasite such as Enoyl-ACP reductase (ENR) and dihydroorotate dehydrogenase (DHODH) becomes an emergency. In drug development, drug repositioning studies and the use of computational strategies can help prioritize promising molecules for biological trials. In this sense, the study proposes the use of experimental and computational data to assist in the prioritization of molecules present in drug databases (DrugBank and Sigma-Aldrich) through hierarchical virtual screening (HVS ? pharmacophoric models and molecular docking) for phenotypic tests. Initially, a series of 19 thiazolidine derivatives with antimalarial activity (0.118 - 0.414 ?M) were used to construct and validate pharmacophore models. After the TVH steps, ZINC61493 (Z61493) was selected based on the search parameters defined for DHODH of Plasmodium falciparum (PfDHODH) and sent for molecular dynamics (MD) studies. Subsequently, molecules from the DrugBank database were evaluated using a protocol defined in previous studies (pharmacophore model for ENR of P. falciparum inhibitors (PfENR) and molecular docking). In the tests, nitrofurantoin showed the best antiplasmodial activity profile (13.92 ?M). In order to improve its permeability profile against the parasite's biological membranes, permeability studies in a lipid bilayer model through MD simulations were carried out with nitrofurantoin and its derivatives. Molecules 14, 18, 21 and Z61493 showed lower free energy values than nitrofurantoin when crossing the lipid bilayer. The feasibility of synthesizing molecules 14, 18, 21 can be evaluated in order to forward them to phenotypic tests. |
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2024 |
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2024-05-15 |
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2025-05-29T20:27:47Z |
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COSTA J?NIOR, David Bacelar. Planejamento e avalia??o de novos compostos com atividade antimal?rica, 2024, 100 f., Disserta??o (doutorado) - Programa de P?s-Gradua??o em Biotecnologia, Universidade Estadual de Feira de Santana, Feira de Santana. |
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http://tede2.uefs.br:8080/handle/tede/1820 |
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COSTA J?NIOR, David Bacelar. Planejamento e avalia??o de novos compostos com atividade antimal?rica, 2024, 100 f., Disserta??o (doutorado) - Programa de P?s-Gradua??o em Biotecnologia, Universidade Estadual de Feira de Santana, Feira de Santana. |
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