A study concerning homeostasis and population development of colagen fibers

Detalhes bibliográficos
Ano de defesa: 2017
Autor(a) principal: Alves, Calebe de Andrade
Orientador(a): Araújo, Ascânio Dias
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: eng
Instituição de defesa: Não Informado pela instituição
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: http://www.repositorio.ufc.br/handle/riufc/27811
Resumo: Collagen is a generic name for the group of the most common proteins in mammals. It confers mechanical stability, strength and toughness to the tissues, in a large number of species. In this work we investigate two properties of collagen that explain in part the choice by natural selection of this substance as an essential building material. In the first study the property under investigation is the homeostasis of a single fiber, i.e., the maintenance of its elastic properties under the action of collagen monomers that contribute to its stiffening and enzymes that digest it. The model used for this purpose is a onedimensional chain of linearly elastic springs in series coupled with layers of sites. Particles representing monomers and enzymes can diffuse along these layers and interact with the springs according to specified rules. The predicted lognormal distribution for the local stiffness is compared to experimental data from electronic microscopy images and a good concordance is found. The second part of this work deals with the distribution of sizes among multiple collagen fibers, which is found to be bimodal, hypothetically because it leads to a compromise between stiffness and toughness of the bundle of fibers. We propose a mechanism for the evolution of the fiber population which includes growth, fusion and birth of fibers and write a Population Balance Equation for that. By performing a parameter estimation over a set of Monte Carlo simulations, we determine the parameters that best fit the available data.
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spelling Alves, Calebe de AndradeAraújo, Ascânio Dias2017-11-22T18:55:25Z2017-11-22T18:55:25Z2017ALVES, C. de A. A study concerning homeostasis and population development of collagen fibers. 2017. 88 f. Tese (Doutorado em Física) – Centro de Ciências, Universidade Federal do Ceará, Fortaleza, 2017.http://www.repositorio.ufc.br/handle/riufc/27811Collagen is a generic name for the group of the most common proteins in mammals. It confers mechanical stability, strength and toughness to the tissues, in a large number of species. In this work we investigate two properties of collagen that explain in part the choice by natural selection of this substance as an essential building material. In the first study the property under investigation is the homeostasis of a single fiber, i.e., the maintenance of its elastic properties under the action of collagen monomers that contribute to its stiffening and enzymes that digest it. The model used for this purpose is a onedimensional chain of linearly elastic springs in series coupled with layers of sites. Particles representing monomers and enzymes can diffuse along these layers and interact with the springs according to specified rules. The predicted lognormal distribution for the local stiffness is compared to experimental data from electronic microscopy images and a good concordance is found. The second part of this work deals with the distribution of sizes among multiple collagen fibers, which is found to be bimodal, hypothetically because it leads to a compromise between stiffness and toughness of the bundle of fibers. We propose a mechanism for the evolution of the fiber population which includes growth, fusion and birth of fibers and write a Population Balance Equation for that. By performing a parameter estimation over a set of Monte Carlo simulations, we determine the parameters that best fit the available data.Collagen is a generic name for the group of the most common proteins in mammals. It confers mechanical stability, strength and toughness to the tissues, in a large number of species. In this work we investigate two properties of collagen that explain in part the choice by natural selection of this substance as an essential building material. In the first study the property under investigation is the homeostasis of a single fiber, i.e., the maintenance of its elastic properties under the action of collagen monomers that contribute to its stiffening and enzymes that digest it. The model used for this purpose is a onedimensional chain of linearly elastic springs in series coupled with layers of sites. Particles representing monomers and enzymes can diffuse along these layers and interact with the springs according to specified rules. The predicted lognormal distribution for the local stiffness is compared to experimental data from electronic microscopy images and a good concordance is found. The second part of this work deals with the distribution of sizes among multiple collagen fibers, which is found to be bimodal, hypothetically because it leads to a compromise between stiffness and toughness of the bundle of fibers. We propose a mechanism for the evolution of the fiber population which includes growth, fusion and birth of fibers and write a Population Balance Equation for that. By performing a parameter estimation over a set of Monte Carlo simulations, we determine the parameters that best fit the available data.HomeostaseColágenoA study concerning homeostasis and population development of colagen fibersinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisengreponame:Repositório Institucional da Universidade Federal do Ceará (UFC)instname:Universidade Federal do Ceará (UFC)instacron:UFCinfo:eu-repo/semantics/openAccessLICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://repositorio.ufc.br/bitstream/riufc/27811/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52ORIGINAL2017_tese_caalves.pdf2017_tese_caalves.pdfapplication/pdf8939939http://repositorio.ufc.br/bitstream/riufc/27811/1/2017_tese_caalves.pdf5cbf75fd845e26cdee776ee15fc2cfbfMD51riufc/278112019-07-05 10:17:09.632oai:repositorio.ufc.br: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Repositório InstitucionalPUBhttp://www.repositorio.ufc.br/ri-oai/requestbu@ufc.br || repositorio@ufc.bropendoar:2019-07-05T13:17:09Repositório Institucional da Universidade Federal do Ceará (UFC) - Universidade Federal do Ceará (UFC)false
dc.title.pt_BR.fl_str_mv A study concerning homeostasis and population development of colagen fibers
title A study concerning homeostasis and population development of colagen fibers
spellingShingle A study concerning homeostasis and population development of colagen fibers
Alves, Calebe de Andrade
Homeostase
Colágeno
title_short A study concerning homeostasis and population development of colagen fibers
title_full A study concerning homeostasis and population development of colagen fibers
title_fullStr A study concerning homeostasis and population development of colagen fibers
title_full_unstemmed A study concerning homeostasis and population development of colagen fibers
title_sort A study concerning homeostasis and population development of colagen fibers
author Alves, Calebe de Andrade
author_facet Alves, Calebe de Andrade
author_role author
dc.contributor.author.fl_str_mv Alves, Calebe de Andrade
dc.contributor.advisor1.fl_str_mv Araújo, Ascânio Dias
contributor_str_mv Araújo, Ascânio Dias
dc.subject.por.fl_str_mv Homeostase
Colágeno
topic Homeostase
Colágeno
description Collagen is a generic name for the group of the most common proteins in mammals. It confers mechanical stability, strength and toughness to the tissues, in a large number of species. In this work we investigate two properties of collagen that explain in part the choice by natural selection of this substance as an essential building material. In the first study the property under investigation is the homeostasis of a single fiber, i.e., the maintenance of its elastic properties under the action of collagen monomers that contribute to its stiffening and enzymes that digest it. The model used for this purpose is a onedimensional chain of linearly elastic springs in series coupled with layers of sites. Particles representing monomers and enzymes can diffuse along these layers and interact with the springs according to specified rules. The predicted lognormal distribution for the local stiffness is compared to experimental data from electronic microscopy images and a good concordance is found. The second part of this work deals with the distribution of sizes among multiple collagen fibers, which is found to be bimodal, hypothetically because it leads to a compromise between stiffness and toughness of the bundle of fibers. We propose a mechanism for the evolution of the fiber population which includes growth, fusion and birth of fibers and write a Population Balance Equation for that. By performing a parameter estimation over a set of Monte Carlo simulations, we determine the parameters that best fit the available data.
publishDate 2017
dc.date.accessioned.fl_str_mv 2017-11-22T18:55:25Z
dc.date.available.fl_str_mv 2017-11-22T18:55:25Z
dc.date.issued.fl_str_mv 2017
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv ALVES, C. de A. A study concerning homeostasis and population development of collagen fibers. 2017. 88 f. Tese (Doutorado em Física) – Centro de Ciências, Universidade Federal do Ceará, Fortaleza, 2017.
dc.identifier.uri.fl_str_mv http://www.repositorio.ufc.br/handle/riufc/27811
identifier_str_mv ALVES, C. de A. A study concerning homeostasis and population development of collagen fibers. 2017. 88 f. Tese (Doutorado em Física) – Centro de Ciências, Universidade Federal do Ceará, Fortaleza, 2017.
url http://www.repositorio.ufc.br/handle/riufc/27811
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da Universidade Federal do Ceará (UFC)
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