Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog.

Detalhes bibliográficos
Ano de defesa: 2014
Autor(a) principal: Guimarães, Rejane Araújo lattes
Orientador(a): Soares, Thannya Nascimento lattes
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal de Goiás
Programa de Pós-Graduação: Programa de Pós-graduação em Genetica e Biologia Molecular
Departamento: Instituto de Ciências Biológicas - ICB (RG)
País: Brasil
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: http://repositorio.bc.ufg.br/tede/handle/tede/4286
Resumo: The distribution patterns of genetic variability within and among subpopulations are important to know the performance of evolutionary processes, to adopt effective conservation strategies and to use genetic plant resources. The population genetic structure is focused on how the genetic variability is distributed within and between subpopulations. Microsatellite markers are especially useful for such analyzes because are highly informative. The Baru (Dipteryx alata Vogel), belongs to the Fabaceae family and is widely distributed in the Cerrado biome, also has a great potential for use in local cooking, as ornamental plant and in popular medicine, so being an important genetic resource plant. This study aimed to evaluate the genetic structure among subpopulations of D. alata which constitute a germplasm collection, maintained by the Escola de Agronomia, of the Universidade Federal de Goiás. The collection consists of 600 individuals from 150 progenies of 25 subpopulations from different regions of Cerrado biome. Nine pairs of primers were used, eight developed for the species D. alata and one developed and transferred from Phaseolus vulgaris for molecular analysis. The number of alleles ranged from 2 to 14 alleles, with an average of 5.5 allele per locus. The average of observed heterozygosity was equal to 0.340 and ranged from 0.102 (DaE06) to 0.711 (DaE41). The expected heterozygosity, under the condition of Hardy-Weinberg equilibrium was equal to 0.383, ranging from 0.162 (DaE06) and 0.809 (DaE41). The analysis of population genetic structure showed a level of medium relatedness between individuals of the same progeny (θs) of 0.169, which is equivalent to that kinship expected for a mixture of half-sibs and full sibs. From the value θs, it can be concluded that there is a high genetic differentiation between the progenies. When evaluated the subpopulations was found an estimated θp equal to 0.097, suggesting that there is a moderate genetic structure. The value of overall intrapopulation fixation index (f=0.122) indicated the presence of low inbreeding in subpopulations that composes the collection of germplasm. The estimated apparent outcrossing rate (ta) value was equal to 0.78. The overall F value was significant and equal to 0.27. The analysis of population genetic structure revealed the presence of genetic structure among subpopulations and among progenies within of the subpopulations. This reveals that the germplasm collection of D. alata presents genetic diversity within and among populations, indicating that the conservation strategies should consider both levels.
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spelling Soares, Thannya Nascimentohttp://lattes.cnpq.br/5590256762396056Chaves, Lázaro Joséhttp://lattes.cnpq.br/1498940461877491Guimarães, Rejane Araújo2015-03-13T19:02:47Z2014-02-28GUIMARÃES, R. A. Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog. 2014. 50 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2014.http://repositorio.bc.ufg.br/tede/handle/tede/4286The distribution patterns of genetic variability within and among subpopulations are important to know the performance of evolutionary processes, to adopt effective conservation strategies and to use genetic plant resources. The population genetic structure is focused on how the genetic variability is distributed within and between subpopulations. Microsatellite markers are especially useful for such analyzes because are highly informative. The Baru (Dipteryx alata Vogel), belongs to the Fabaceae family and is widely distributed in the Cerrado biome, also has a great potential for use in local cooking, as ornamental plant and in popular medicine, so being an important genetic resource plant. This study aimed to evaluate the genetic structure among subpopulations of D. alata which constitute a germplasm collection, maintained by the Escola de Agronomia, of the Universidade Federal de Goiás. The collection consists of 600 individuals from 150 progenies of 25 subpopulations from different regions of Cerrado biome. Nine pairs of primers were used, eight developed for the species D. alata and one developed and transferred from Phaseolus vulgaris for molecular analysis. The number of alleles ranged from 2 to 14 alleles, with an average of 5.5 allele per locus. The average of observed heterozygosity was equal to 0.340 and ranged from 0.102 (DaE06) to 0.711 (DaE41). The expected heterozygosity, under the condition of Hardy-Weinberg equilibrium was equal to 0.383, ranging from 0.162 (DaE06) and 0.809 (DaE41). The analysis of population genetic structure showed a level of medium relatedness between individuals of the same progeny (θs) of 0.169, which is equivalent to that kinship expected for a mixture of half-sibs and full sibs. From the value θs, it can be concluded that there is a high genetic differentiation between the progenies. When evaluated the subpopulations was found an estimated θp equal to 0.097, suggesting that there is a moderate genetic structure. The value of overall intrapopulation fixation index (f=0.122) indicated the presence of low inbreeding in subpopulations that composes the collection of germplasm. The estimated apparent outcrossing rate (ta) value was equal to 0.78. The overall F value was significant and equal to 0.27. The analysis of population genetic structure revealed the presence of genetic structure among subpopulations and among progenies within of the subpopulations. This reveals that the germplasm collection of D. alata presents genetic diversity within and among populations, indicating that the conservation strategies should consider both levels.Os padrões de distribuição da variabilidade genética dentro e entre subpopulações são importantes a fim de conhecer a atuação dos processos evolutivos, para a adoção de estratégias eficazes de conservação e uso de recursos genéticos vegetais. A estrutura genética populacional está relacionada com a forma como a variabilidade genética está distribuída dentro e entre as subpopulações. Os marcadores microssatélites são especialmente úteis para tais análises por serem altamente informativos. O Baru (Dipteryx alata Vogel), pertence à família Fabaceae e apresenta ampla distribuição no bioma Cerrado e um grande potencial para o uso na culinária local, ornamental e medicinal, sendo um importante recurso genético vegetal. Este estudo teve como objetivo avaliar a estrutura genética entre subpopulações de D. alata que constituem uma coleção de germoplasma, mantida pela Escola de Agronomia da Universidade Federal de Goiás. A coleção consiste de 600 indivíduos de 150 progênies de 25 subpopulações provenientes de diferentes regiões do bioma Cerrado. Foram utilizados nove pares de primers, oito desenvolvidos para a espécie D. alata e um desenvolvido e transferido de Phaseolus vulgaris para a análise molecular. Foram observados entre 2 e 14 alelos, com média de 5,5 alelo por loco. O valor médio de heterozigosidade observada foi igual a 0,340 e variou de 0,102 (DaE06) a 0,711 (DaE41). A heterozigosidade esperada, sob a condição de equilíbrio de Hardy-Weinberg, foi igual a 0,383, variando entre 0,162 (DaE06) e 0,809 (DaE41). A analise de estrutura genética populacional apresentou um nível de parentesco médio entre indivíduos de uma mesma progênie (θs) de 0,169, o que equivale ao parentesco esperado para uma mistura de meio-irmãos e irmãos completos. A partir do valor de θs, pode-se concluir que há uma alta diferenciação genética entre as progênies. Quando avaliadas as subpopulações, foi encontrado um valor estimado de θp igual a 0,097, sugerindo que existe uma moderada estruturação genética. O valor do índice de fixação intrapopulacional global (f=0,122) indicou a presença de baixa endogamia nas subpopulações que compõem a coleção de germoplasma. A estimativa da taxa de fecundação cruzada aparente (ta) teve valor igual a 0,78. O valor global de F foi significativo e igual a 0,27. A análise de estrutura genética populacional revelou presença de estruturação genética entre subpopulações e entre progênies dentro de subpopulações. Isso revela que a coleção de germoplasma de baru apresenta diversidade genética entre e dentro de populações, indicando que as estratégias de conservação devem considerar os dois níveis.Submitted by Erika Demachki (erikademachki@gmail.com) on 2015-03-12T16:44:52Z No. of bitstreams: 2 Dissertação - Rejane Araújo Guimarães - 2014.pdf: 1258382 bytes, checksum: cdef87095b435bfcbc107052f516ff89 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Approved for entry into archive by Erika Demachki (erikademachki@gmail.com) on 2015-03-13T19:02:47Z (GMT) No. of bitstreams: 2 Dissertação - Rejane Araújo Guimarães - 2014.pdf: 1258382 bytes, checksum: cdef87095b435bfcbc107052f516ff89 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5)Made available in DSpace on 2015-03-13T19:02:47Z (GMT). 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dc.title.por.fl_str_mv Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog.
dc.title.alternative.eng.fl_str_mv Molecular genetic structure of a Germplasm collection of in vivo and ex situ Dipteryx alata Vog.
title Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog.
spellingShingle Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog.
Guimarães, Rejane Araújo
Baru
Cerrado
Diversidade genética
Microssatélites
Recursos genéticos
Genetics
Microsatellite diversity
Genetic resources
BIOQUIMICA::BIOLOGIA MOLECULAR
title_short Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog.
title_full Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog.
title_fullStr Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog.
title_full_unstemmed Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog.
title_sort Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog.
author Guimarães, Rejane Araújo
author_facet Guimarães, Rejane Araújo
author_role author
dc.contributor.advisor1.fl_str_mv Soares, Thannya Nascimento
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/5590256762396056
dc.contributor.advisor-co1.fl_str_mv Chaves, Lázaro José
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/1498940461877491
dc.contributor.author.fl_str_mv Guimarães, Rejane Araújo
contributor_str_mv Soares, Thannya Nascimento
Chaves, Lázaro José
dc.subject.por.fl_str_mv Baru
Cerrado
Diversidade genética
Microssatélites
Recursos genéticos
topic Baru
Cerrado
Diversidade genética
Microssatélites
Recursos genéticos
Genetics
Microsatellite diversity
Genetic resources
BIOQUIMICA::BIOLOGIA MOLECULAR
dc.subject.eng.fl_str_mv Genetics
Microsatellite diversity
Genetic resources
dc.subject.cnpq.fl_str_mv BIOQUIMICA::BIOLOGIA MOLECULAR
description The distribution patterns of genetic variability within and among subpopulations are important to know the performance of evolutionary processes, to adopt effective conservation strategies and to use genetic plant resources. The population genetic structure is focused on how the genetic variability is distributed within and between subpopulations. Microsatellite markers are especially useful for such analyzes because are highly informative. The Baru (Dipteryx alata Vogel), belongs to the Fabaceae family and is widely distributed in the Cerrado biome, also has a great potential for use in local cooking, as ornamental plant and in popular medicine, so being an important genetic resource plant. This study aimed to evaluate the genetic structure among subpopulations of D. alata which constitute a germplasm collection, maintained by the Escola de Agronomia, of the Universidade Federal de Goiás. The collection consists of 600 individuals from 150 progenies of 25 subpopulations from different regions of Cerrado biome. Nine pairs of primers were used, eight developed for the species D. alata and one developed and transferred from Phaseolus vulgaris for molecular analysis. The number of alleles ranged from 2 to 14 alleles, with an average of 5.5 allele per locus. The average of observed heterozygosity was equal to 0.340 and ranged from 0.102 (DaE06) to 0.711 (DaE41). The expected heterozygosity, under the condition of Hardy-Weinberg equilibrium was equal to 0.383, ranging from 0.162 (DaE06) and 0.809 (DaE41). The analysis of population genetic structure showed a level of medium relatedness between individuals of the same progeny (θs) of 0.169, which is equivalent to that kinship expected for a mixture of half-sibs and full sibs. From the value θs, it can be concluded that there is a high genetic differentiation between the progenies. When evaluated the subpopulations was found an estimated θp equal to 0.097, suggesting that there is a moderate genetic structure. The value of overall intrapopulation fixation index (f=0.122) indicated the presence of low inbreeding in subpopulations that composes the collection of germplasm. The estimated apparent outcrossing rate (ta) value was equal to 0.78. The overall F value was significant and equal to 0.27. The analysis of population genetic structure revealed the presence of genetic structure among subpopulations and among progenies within of the subpopulations. This reveals that the germplasm collection of D. alata presents genetic diversity within and among populations, indicating that the conservation strategies should consider both levels.
publishDate 2014
dc.date.issued.fl_str_mv 2014-02-28
dc.date.accessioned.fl_str_mv 2015-03-13T19:02:47Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv GUIMARÃES, R. A. Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog. 2014. 50 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2014.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/4286
identifier_str_mv GUIMARÃES, R. A. Estrutura genética molecular de uma coleção de Germoplasma in vivo e ex situ de Dipteryx alata Vog. 2014. 50 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2014.
url http://repositorio.bc.ufg.br/tede/handle/tede/4286
dc.language.iso.fl_str_mv por
language por
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dc.relation.confidence.fl_str_mv 600
600
600
600
dc.relation.department.fl_str_mv -3872772117827373404
dc.relation.cnpq.fl_str_mv 3962143990328052072
dc.relation.sponsorship.fl_str_mv 2075167498588264571
dc.rights.driver.fl_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Goiás
dc.publisher.program.fl_str_mv Programa de Pós-graduação em Genetica e Biologia Molecular
dc.publisher.initials.fl_str_mv UFG
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Instituto de Ciências Biológicas - ICB (RG)
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