Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae)

Detalhes bibliográficos
Ano de defesa: 2020
Autor(a) principal: Miranda, Alline Afonso do Nascimento Creado de lattes
Orientador(a): Telles, Mariana Pires de Campos lattes
Banca de defesa: Telles, Mariana Pires de Campos, Braga, Ramilla dos Santos, Pinto, Rafael Barbosa
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal de Goiás
Programa de Pós-Graduação: Programa de Pós-graduação em Genética e Biologia Molecular (ICB)
Departamento: Instituto de Ciências Biológicas - ICB (RG)
País: Brasil
Palavras-chave em Português:
SSR
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: http://repositorio.bc.ufg.br/tede/handle/tede/10588
Resumo: The Cerrado biome, despite containing one of the greatest biodiversity on the planet, undergoes constant deforestation due to the expansion of agricultural frontiers. The loss of natural territory consequently leads to the loss of genetic diversity. This is worrying when it comes to native species, such as Stryphnodendron adstringens, popularly known as barbatimão. Therefore, it is important to know the characteristics of the biology of S. adstringens, in order to define efficient management and conservation strategies. In this context, the objective of this study was to evaluate genetic diversity, genetic flow (estimating the size of the neighborhood group), the presence of clones and the spatial genetic structure existing in a natural population of S. adstringens. For this, genomic DNA was extracted from the leaf tissue of 124 individuals, all georeferenced. For the amplification of the microsatellite regions, nine pairs of primers developed for the species were used. Based on the genotype matrix, analyzes of genetic diversity, effective size of inbreeding, cross-fertilization rate, spatial genetic structure and identity analysis were performed to verify the occurrence of clones. For the nine loci, a total of 74 alleles were found and an average of 8.2 alleles per location. The observed average heterozygosity (HO) was equal to 0.556 and the average genetic diversity (HE) was equal to 0.624. The inbreeding coefficient (f) was significant and equal to 0.110, showing an excess of homozygotes. The genetic diversity in the population was considered high, with 71% of the maximum expected heterozygosity. The crossing system was considered mixed based on the cross fertilization rate (t ̂a) equal to 0.80. The effective size of the consanguinity (Nef) was 111.72; corresponding to a genetic representation of 0.90, indicating that there is no genetic deviation in the population. There was a significant spatial genetic structure in the first distance class with pairs of up to 49 meters. A Sp statistic equal to 0.0095 was considered moderate and associated with the genetic neighborhood (Nb = 105.3) demonstrated that pollen dispersion is efficient to maintain genetic diversity in the population. Ten groups of individuals with identical genotypes were found for nine sites used, suggesting the occurrence of vegetative reproduction. The results plan was possible, which, for the formation of germplasm banks, is collected at a minimum distance of 49 meters between the guaranteed items, in addition to contemplating the genetic diversity present in the population.
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spelling Telles, Mariana Pires de Camposttp://lattes.cnpq.br/4648436798023532Telles, Mariana Pires de CamposBraga, Ramilla dos SantosPinto, Rafael Barbosahttp://lattes.cnpq.br/1354539168041723Miranda, Alline Afonso do Nascimento Creado de2020-09-08T13:29:47Z2020-09-08T13:29:47Z2020-04-13MIRANDA , Alline Afonso do Nascimento Creado de. Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae). 2020. 52 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2020.http://repositorio.bc.ufg.br/tede/handle/tede/10588ark:/38995/00130000063knThe Cerrado biome, despite containing one of the greatest biodiversity on the planet, undergoes constant deforestation due to the expansion of agricultural frontiers. The loss of natural territory consequently leads to the loss of genetic diversity. This is worrying when it comes to native species, such as Stryphnodendron adstringens, popularly known as barbatimão. Therefore, it is important to know the characteristics of the biology of S. adstringens, in order to define efficient management and conservation strategies. In this context, the objective of this study was to evaluate genetic diversity, genetic flow (estimating the size of the neighborhood group), the presence of clones and the spatial genetic structure existing in a natural population of S. adstringens. For this, genomic DNA was extracted from the leaf tissue of 124 individuals, all georeferenced. For the amplification of the microsatellite regions, nine pairs of primers developed for the species were used. Based on the genotype matrix, analyzes of genetic diversity, effective size of inbreeding, cross-fertilization rate, spatial genetic structure and identity analysis were performed to verify the occurrence of clones. For the nine loci, a total of 74 alleles were found and an average of 8.2 alleles per location. The observed average heterozygosity (HO) was equal to 0.556 and the average genetic diversity (HE) was equal to 0.624. The inbreeding coefficient (f) was significant and equal to 0.110, showing an excess of homozygotes. The genetic diversity in the population was considered high, with 71% of the maximum expected heterozygosity. The crossing system was considered mixed based on the cross fertilization rate (t ̂a) equal to 0.80. The effective size of the consanguinity (Nef) was 111.72; corresponding to a genetic representation of 0.90, indicating that there is no genetic deviation in the population. There was a significant spatial genetic structure in the first distance class with pairs of up to 49 meters. A Sp statistic equal to 0.0095 was considered moderate and associated with the genetic neighborhood (Nb = 105.3) demonstrated that pollen dispersion is efficient to maintain genetic diversity in the population. Ten groups of individuals with identical genotypes were found for nine sites used, suggesting the occurrence of vegetative reproduction. The results plan was possible, which, for the formation of germplasm banks, is collected at a minimum distance of 49 meters between the guaranteed items, in addition to contemplating the genetic diversity present in the population.O bioma Cerrado, apesar de conter uma das maiores biodiversidades do planeta, sofre com constantes desmatamentos em função da expansão das fronteiras agrícolas. A perda de território natural leva, consequentemente, a uma perda de diversidade genética. Isso é preocupante quando se trata de espécies nativas, como Stryphnodendron adstringens, conhecida popularmente como barbatimão. Diante disso, é importante conhecer as características da biologia de S. adstringens, a fim de se estabelecer estratégias eficientes de manejo e conservação. Nesse contexto, o objetivo desse estudo foi avaliar a diversidade genética, o fluxo gênico (através da estimativa do tamanho do grupo de vizinhança), a presença de clones e a estrutura genética espacial existente dentro de uma população natural de S. adstringens. Para tanto, foi extraído o DNA genômico do tecido foliar de 124 indivíduos, todos georreferenciados. Para a amplificação das regiões microssatélites foram utilizados nove pares de primers desenvolvidos para a espécie. Com base na matriz de genótipos, foram realizadas as análises de diversidade genética, de tamanho efetivo de endogamia, taxa de fecundação cruzada, estrutura genética espacial e análise de identidade para verificar a existência de clones. Para os nove locos foram encontrados um total de 74 alelos e uma média de 8,2 alelos por loco. A heterozigosidade observada média (HO) foi igual a 0,556 e a diversidade genética média (HE) igual a 0,624. O coeficiente de endogamia (f) foi significativo e igual a 0,110, demonstrando excesso de homozigotos. A diversidade genética na população foi considerada alta, com 71% da heterozigosidade máxima esperada. O sistema de cruzamento foi considerado misto com com base na taxa de fecundação cruzada (t ̂a) igual a 0,80. O tamanho efetivo de endogamia (Nef) foi igual a 111,72; correspondendo a uma representatividade genética de 0,90 indicando que não há deriva genética na população. Houve estrutura genética espacial significativa na primeira classe de distância com os pares até 49 metros. A estatística Sp igual a 0,0095 foi considerada moderada e juntamente com a vizinhança genética (Nb = 105,3) demonstrou que a dispersão de pólen é eficiente para manter a diversidade genética na população. Foram encontrados 10 grupos de indivíduos com genótipos idênticos para os nove locos usados, sugerindo a existência de reprodução vegetativa. A partir dos resultados foi possível estabelecer que, para a formação de bancos de germoplasma é indicada coleta com distância de, pelo menos, 49 metros entre os indivíduos assegurando assim contemplar a diversidade genética presente na população.Fundação de Amparo à Pesquisa do Estado de GoiásporUniversidade Federal de GoiásPrograma de Pós-graduação em Genética e Biologia Molecular (ICB)UFGBrasilInstituto de Ciências Biológicas - ICB (RG)Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessBarbatimãoClonesDiversidade genéticaSSRGenetic diversityCIENCIAS BIOLOGICAS::GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOSEstrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae)Intrapopulational spatial genetic structure in Stryphnodendron adstringens (barbatimão fabaceae)info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis55500500500500246493reponame:Repositório Institucional da UFGinstname:Universidade Federal de Goiás (UFG)instacron:UFGORIGINALDissertação - Alline Afonso do Nascimento Creado de Miranda - 2020.pdfDissertação - Alline Afonso do Nascimento Creado de Miranda - 2020.pdfapplication/pdf1469005http://repositorio.bc.ufg.br/tede/bitstreams/b5d9f12b-30fd-4f42-9718-773b740bfb56/download081171ab1aac9570814e5717fbe733f2MD53LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://repositorio.bc.ufg.br/tede/bitstreams/594a0aa8-2d1d-48f1-95aa-30b0a863e5b1/download8a4605be74aa9ea9d79846c1fba20a33MD54CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8811http://repositorio.bc.ufg.br/tede/bitstreams/459c9e2e-b543-41cb-8018-b585593bd17d/downloade39d27027a6cc9cb039ad269a5db8e34MD55tede/105882020-09-08 10:29:54.12http://creativecommons.org/licenses/by-nc-nd/3.0/br/Attribution-NonCommercial-NoDerivs 3.0 Brazilopen.accessoai:repositorio.bc.ufg.br:tede/10588http://repositorio.bc.ufg.br/tedeRepositório InstitucionalPUBhttps://repositorio.bc.ufg.br/tedeserver/oai/requestgrt.bc@ufg.bropendoar:oai:repositorio.bc.ufg.br:tede/12342020-09-08T13:29:54Repositório Institucional da UFG - Universidade Federal de Goiás (UFG)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
dc.title.pt_BR.fl_str_mv Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae)
dc.title.alternative.eng.fl_str_mv Intrapopulational spatial genetic structure in Stryphnodendron adstringens (barbatimão fabaceae)
title Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae)
spellingShingle Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae)
Miranda, Alline Afonso do Nascimento Creado de
Barbatimão
Clones
Diversidade genética
SSR
Genetic diversity
CIENCIAS BIOLOGICAS::GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOS
title_short Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae)
title_full Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae)
title_fullStr Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae)
title_full_unstemmed Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae)
title_sort Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae)
author Miranda, Alline Afonso do Nascimento Creado de
author_facet Miranda, Alline Afonso do Nascimento Creado de
author_role author
dc.contributor.advisor1.fl_str_mv Telles, Mariana Pires de Campos
dc.contributor.advisor1Lattes.fl_str_mv ttp://lattes.cnpq.br/4648436798023532
dc.contributor.referee1.fl_str_mv Telles, Mariana Pires de Campos
dc.contributor.referee2.fl_str_mv Braga, Ramilla dos Santos
dc.contributor.referee3.fl_str_mv Pinto, Rafael Barbosa
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/1354539168041723
dc.contributor.author.fl_str_mv Miranda, Alline Afonso do Nascimento Creado de
contributor_str_mv Telles, Mariana Pires de Campos
Telles, Mariana Pires de Campos
Braga, Ramilla dos Santos
Pinto, Rafael Barbosa
dc.subject.por.fl_str_mv Barbatimão
Clones
Diversidade genética
SSR
topic Barbatimão
Clones
Diversidade genética
SSR
Genetic diversity
CIENCIAS BIOLOGICAS::GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOS
dc.subject.eng.fl_str_mv Genetic diversity
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS::GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOS
description The Cerrado biome, despite containing one of the greatest biodiversity on the planet, undergoes constant deforestation due to the expansion of agricultural frontiers. The loss of natural territory consequently leads to the loss of genetic diversity. This is worrying when it comes to native species, such as Stryphnodendron adstringens, popularly known as barbatimão. Therefore, it is important to know the characteristics of the biology of S. adstringens, in order to define efficient management and conservation strategies. In this context, the objective of this study was to evaluate genetic diversity, genetic flow (estimating the size of the neighborhood group), the presence of clones and the spatial genetic structure existing in a natural population of S. adstringens. For this, genomic DNA was extracted from the leaf tissue of 124 individuals, all georeferenced. For the amplification of the microsatellite regions, nine pairs of primers developed for the species were used. Based on the genotype matrix, analyzes of genetic diversity, effective size of inbreeding, cross-fertilization rate, spatial genetic structure and identity analysis were performed to verify the occurrence of clones. For the nine loci, a total of 74 alleles were found and an average of 8.2 alleles per location. The observed average heterozygosity (HO) was equal to 0.556 and the average genetic diversity (HE) was equal to 0.624. The inbreeding coefficient (f) was significant and equal to 0.110, showing an excess of homozygotes. The genetic diversity in the population was considered high, with 71% of the maximum expected heterozygosity. The crossing system was considered mixed based on the cross fertilization rate (t ̂a) equal to 0.80. The effective size of the consanguinity (Nef) was 111.72; corresponding to a genetic representation of 0.90, indicating that there is no genetic deviation in the population. There was a significant spatial genetic structure in the first distance class with pairs of up to 49 meters. A Sp statistic equal to 0.0095 was considered moderate and associated with the genetic neighborhood (Nb = 105.3) demonstrated that pollen dispersion is efficient to maintain genetic diversity in the population. Ten groups of individuals with identical genotypes were found for nine sites used, suggesting the occurrence of vegetative reproduction. The results plan was possible, which, for the formation of germplasm banks, is collected at a minimum distance of 49 meters between the guaranteed items, in addition to contemplating the genetic diversity present in the population.
publishDate 2020
dc.date.accessioned.fl_str_mv 2020-09-08T13:29:47Z
dc.date.available.fl_str_mv 2020-09-08T13:29:47Z
dc.date.issued.fl_str_mv 2020-04-13
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.citation.fl_str_mv MIRANDA , Alline Afonso do Nascimento Creado de. Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae). 2020. 52 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2020.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/10588
dc.identifier.dark.fl_str_mv ark:/38995/00130000063kn
identifier_str_mv MIRANDA , Alline Afonso do Nascimento Creado de. Estrutura genética espacial intrapopulacional em Stryphnodendron adstringens (barbatimão fabaceae). 2020. 52 f. Dissertação (Mestrado em Genética e Biologia Molecular) - Universidade Federal de Goiás, Goiânia, 2020.
ark:/38995/00130000063kn
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dc.publisher.none.fl_str_mv Universidade Federal de Goiás
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dc.publisher.department.fl_str_mv Instituto de Ciências Biológicas - ICB (RG)
publisher.none.fl_str_mv Universidade Federal de Goiás
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