Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial

Detalhes bibliográficos
Ano de defesa: 2023
Autor(a) principal: Souza, Shamon Henrique Feitosa de lattes
Orientador(a): Oliveira, Heibbe Cristhian Benedito de lattes
Banca de defesa: Oliveira, Heibbe Cristhian Benedito de, Franco Junior, Adolfo, Gargano, Ricardo
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal de Goiás
Programa de Pós-Graduação: Programa de Pós-graduação em Química (IQ)
Departamento: Instituto de Química - IQ (RMG)
País: Brasil
Palavras-chave em Português:
DFT
Palavras-chave em Inglês:
DFT
Área do conhecimento CNPq:
Link de acesso: http://repositorio.bc.ufg.br/tede/handle/tede/12711
Resumo: In this work, we investigated the photophysical properties of four recently synthesized peptoids employing Quantum Chemistry calculations. The environment in which the solute is inserted can directly influence its properties, as the interactions of the solute with other molecules directly affect the geometric and electronic structure of the entire system. Therefore, in this work we use explicit solvation methods, in which each solvent molecule is explicitly treated and the total contribution of solvent molecules is included in the system, thus providing a better approximation between theoretical and experimental values. We studied the effect of explicit solvent treatment on the electronic properties of fluorescent peptoids, solvated in five different solvents, through computer simulations using a hybrid methodology (QM/MM). Sequentially to the Monte Carlo calculations (ASEC via DICE program) ab initio quantum calculations were performed in which we used several exchange-correlation functionals in order to identify which is the most suitable for the studied peptoids and analogous systems. The results obtained via theoretical calculations were compared with the experimental results published by Wender et al. (2016). With that, we developed a computational protocol comparable to the experimental values.
id UFG-2_bbdfd94d4f3afb4163792acb1918e2b8
oai_identifier_str oai:repositorio.bc.ufg.br:tede/12711
network_acronym_str UFG-2
network_name_str Repositório Institucional da UFG
repository_id_str
spelling Oliveira, Heibbe Cristhian Benedito dehttp://lattes.cnpq.br/5995553993631378Oliveira, Heibbe Cristhian Benedito deFranco Junior, AdolfoGargano, Ricardohttp://lattes.cnpq.br/2621391557286636Souza, Shamon Henrique Feitosa de2023-04-03T13:25:28Z2023-04-03T13:25:28Z2023-02-23SOUZA, S. H. F. Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial. 2023. 68 f. Dissertação (Mestrado em Química) - Universidade Federal de Goiás, Goiânia, 2023.http://repositorio.bc.ufg.br/tede/handle/tede/12711In this work, we investigated the photophysical properties of four recently synthesized peptoids employing Quantum Chemistry calculations. The environment in which the solute is inserted can directly influence its properties, as the interactions of the solute with other molecules directly affect the geometric and electronic structure of the entire system. Therefore, in this work we use explicit solvation methods, in which each solvent molecule is explicitly treated and the total contribution of solvent molecules is included in the system, thus providing a better approximation between theoretical and experimental values. We studied the effect of explicit solvent treatment on the electronic properties of fluorescent peptoids, solvated in five different solvents, through computer simulations using a hybrid methodology (QM/MM). Sequentially to the Monte Carlo calculations (ASEC via DICE program) ab initio quantum calculations were performed in which we used several exchange-correlation functionals in order to identify which is the most suitable for the studied peptoids and analogous systems. The results obtained via theoretical calculations were compared with the experimental results published by Wender et al. (2016). With that, we developed a computational protocol comparable to the experimental values.O presente projeto foi baseado na aplicação de cálculos de Química Quântica Computacional para a investigar propriedades fotofísicas de quatro peptóides recentemente sintetizados. O ambiente em que está inserido o soluto pode influenciar diretamente em suas propriedades, pois as interações do soluto com as demais moléculas afetam diretamente a estrutura geométrica e eletrônica de todo o sistema. Portanto, neste trabalho utilizamos de métodos explícitos de solvatação, em que cada molécula de solvente é explicitamente tratada e a contribuição total das moléculas de solvente é incluída no sistema, proporcionando assim uma melhor aproximação entre os valores teóricos e experimentais. Estudamos o efeito do tratamento explícito de solvente nas propriedades eletrônicas de peptóides fluorescentes, solvatados em cinco diferentes solventes, por meio de simulações computacionais utilizando uma metodologia híbrida (QM/MM). Sequencialmente aos cálculos de Monte Carlo (ASEC via programa DICE) foram realizados cálculos quânticos ab initio em que utilizamos vários funcionais de troca-correlação com o objetivo de identificar qual é o mais adequado para os peptóides estudados e sistemas análogos. Os resultados obtidos via cálculos teóricos foram comparados com os resultados experimentais publicados por Wender et al. (2016). Com isso, desenvolvemos um protocolo computacional comparável aos valores experimentais.porUniversidade Federal de GoiásPrograma de Pós-graduação em Química (IQ)UFGBrasilInstituto de Química - IQ (RMG)Attribution-NonCommercial-NoDerivatives 4.0 Internationalinfo:eu-repo/semantics/openAccessPeptóidesQuímica quânticaDFTSolventePropriedades fotofísicasASECPeptoidsQuantum chemistryDFTSolventPhotophysical propertiesASECOUTROSEfeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencialExplicit solvatation effect on the electronic properties of fluorescent peptoids via sequential QM/MM methodologyinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis8450050050029952reponame:Repositório Institucional da UFGinstname:Universidade Federal de Goiás (UFG)instacron:UFGCC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8805http://repositorio.bc.ufg.br/tede/bitstreams/fedcd71d-41f7-4b34-ad84-4f7679bb8670/download4460e5956bc1d1639be9ae6146a50347MD52ORIGINALDissertação - Shamon Henrique Feitosa de Souza - 2023.pdfDissertação - Shamon Henrique Feitosa de Souza - 2023.pdfapplication/pdf3919554http://repositorio.bc.ufg.br/tede/bitstreams/0980338d-c49d-4d4d-a604-8f49480e32dd/download862e7283eef27d22ab86a5a8f7b60a3bMD53LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://repositorio.bc.ufg.br/tede/bitstreams/c265a137-6e12-4b69-afa5-cdfb8562ffe5/download8a4605be74aa9ea9d79846c1fba20a33MD51tede/127112023-04-03 10:25:28.226http://creativecommons.org/licenses/by-nc-nd/4.0/Attribution-NonCommercial-NoDerivatives 4.0 Internationalopen.accessoai:repositorio.bc.ufg.br:tede/12711http://repositorio.bc.ufg.br/tedeRepositório InstitucionalPUBhttps://repositorio.bc.ufg.br/tedeserver/oai/requestgrt.bc@ufg.bropendoar:oai:repositorio.bc.ufg.br:tede/12342023-04-03T13:25:28Repositório Institucional da UFG - Universidade Federal de Goiás (UFG)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
dc.title.pt_BR.fl_str_mv Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial
dc.title.alternative.eng.fl_str_mv Explicit solvatation effect on the electronic properties of fluorescent peptoids via sequential QM/MM methodology
title Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial
spellingShingle Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial
Souza, Shamon Henrique Feitosa de
Peptóides
Química quântica
DFT
Solvente
Propriedades fotofísicas
ASEC
Peptoids
Quantum chemistry
DFT
Solvent
Photophysical properties
ASEC
OUTROS
title_short Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial
title_full Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial
title_fullStr Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial
title_full_unstemmed Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial
title_sort Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial
author Souza, Shamon Henrique Feitosa de
author_facet Souza, Shamon Henrique Feitosa de
author_role author
dc.contributor.advisor1.fl_str_mv Oliveira, Heibbe Cristhian Benedito de
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/5995553993631378
dc.contributor.referee1.fl_str_mv Oliveira, Heibbe Cristhian Benedito de
dc.contributor.referee2.fl_str_mv Franco Junior, Adolfo
dc.contributor.referee3.fl_str_mv Gargano, Ricardo
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/2621391557286636
dc.contributor.author.fl_str_mv Souza, Shamon Henrique Feitosa de
contributor_str_mv Oliveira, Heibbe Cristhian Benedito de
Oliveira, Heibbe Cristhian Benedito de
Franco Junior, Adolfo
Gargano, Ricardo
dc.subject.por.fl_str_mv Peptóides
Química quântica
DFT
Solvente
Propriedades fotofísicas
ASEC
topic Peptóides
Química quântica
DFT
Solvente
Propriedades fotofísicas
ASEC
Peptoids
Quantum chemistry
DFT
Solvent
Photophysical properties
ASEC
OUTROS
dc.subject.eng.fl_str_mv Peptoids
Quantum chemistry
DFT
Solvent
Photophysical properties
ASEC
dc.subject.cnpq.fl_str_mv OUTROS
description In this work, we investigated the photophysical properties of four recently synthesized peptoids employing Quantum Chemistry calculations. The environment in which the solute is inserted can directly influence its properties, as the interactions of the solute with other molecules directly affect the geometric and electronic structure of the entire system. Therefore, in this work we use explicit solvation methods, in which each solvent molecule is explicitly treated and the total contribution of solvent molecules is included in the system, thus providing a better approximation between theoretical and experimental values. We studied the effect of explicit solvent treatment on the electronic properties of fluorescent peptoids, solvated in five different solvents, through computer simulations using a hybrid methodology (QM/MM). Sequentially to the Monte Carlo calculations (ASEC via DICE program) ab initio quantum calculations were performed in which we used several exchange-correlation functionals in order to identify which is the most suitable for the studied peptoids and analogous systems. The results obtained via theoretical calculations were compared with the experimental results published by Wender et al. (2016). With that, we developed a computational protocol comparable to the experimental values.
publishDate 2023
dc.date.accessioned.fl_str_mv 2023-04-03T13:25:28Z
dc.date.available.fl_str_mv 2023-04-03T13:25:28Z
dc.date.issued.fl_str_mv 2023-02-23
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv SOUZA, S. H. F. Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial. 2023. 68 f. Dissertação (Mestrado em Química) - Universidade Federal de Goiás, Goiânia, 2023.
dc.identifier.uri.fl_str_mv http://repositorio.bc.ufg.br/tede/handle/tede/12711
identifier_str_mv SOUZA, S. H. F. Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial. 2023. 68 f. Dissertação (Mestrado em Química) - Universidade Federal de Goiás, Goiânia, 2023.
url http://repositorio.bc.ufg.br/tede/handle/tede/12711
dc.language.iso.fl_str_mv por
language por
dc.relation.program.fl_str_mv 84
dc.relation.confidence.fl_str_mv 500
500
500
dc.relation.department.fl_str_mv 29
dc.relation.cnpq.fl_str_mv 952
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade Federal de Goiás
dc.publisher.program.fl_str_mv Programa de Pós-graduação em Química (IQ)
dc.publisher.initials.fl_str_mv UFG
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Instituto de Química - IQ (RMG)
publisher.none.fl_str_mv Universidade Federal de Goiás
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFG
instname:Universidade Federal de Goiás (UFG)
instacron:UFG
instname_str Universidade Federal de Goiás (UFG)
instacron_str UFG
institution UFG
reponame_str Repositório Institucional da UFG
collection Repositório Institucional da UFG
bitstream.url.fl_str_mv http://repositorio.bc.ufg.br/tede/bitstreams/fedcd71d-41f7-4b34-ad84-4f7679bb8670/download
http://repositorio.bc.ufg.br/tede/bitstreams/0980338d-c49d-4d4d-a604-8f49480e32dd/download
http://repositorio.bc.ufg.br/tede/bitstreams/c265a137-6e12-4b69-afa5-cdfb8562ffe5/download
bitstream.checksum.fl_str_mv 4460e5956bc1d1639be9ae6146a50347
862e7283eef27d22ab86a5a8f7b60a3b
8a4605be74aa9ea9d79846c1fba20a33
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFG - Universidade Federal de Goiás (UFG)
repository.mail.fl_str_mv grt.bc@ufg.br
_version_ 1861293880470667264