Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial
| Ano de defesa: | 2023 |
|---|---|
| Autor(a) principal: | |
| Orientador(a): | |
| Banca de defesa: | , , |
| Tipo de documento: | Dissertação |
| Tipo de acesso: | Acesso aberto |
| Idioma: | por |
| Instituição de defesa: |
Universidade Federal de Goiás
|
| Programa de Pós-Graduação: |
Programa de Pós-graduação em Química (IQ)
|
| Departamento: |
Instituto de Química - IQ (RMG)
|
| País: |
Brasil
|
| Palavras-chave em Português: | |
| Palavras-chave em Inglês: | |
| Área do conhecimento CNPq: | |
| Link de acesso: | http://repositorio.bc.ufg.br/tede/handle/tede/12711 |
Resumo: | In this work, we investigated the photophysical properties of four recently synthesized peptoids employing Quantum Chemistry calculations. The environment in which the solute is inserted can directly influence its properties, as the interactions of the solute with other molecules directly affect the geometric and electronic structure of the entire system. Therefore, in this work we use explicit solvation methods, in which each solvent molecule is explicitly treated and the total contribution of solvent molecules is included in the system, thus providing a better approximation between theoretical and experimental values. We studied the effect of explicit solvent treatment on the electronic properties of fluorescent peptoids, solvated in five different solvents, through computer simulations using a hybrid methodology (QM/MM). Sequentially to the Monte Carlo calculations (ASEC via DICE program) ab initio quantum calculations were performed in which we used several exchange-correlation functionals in order to identify which is the most suitable for the studied peptoids and analogous systems. The results obtained via theoretical calculations were compared with the experimental results published by Wender et al. (2016). With that, we developed a computational protocol comparable to the experimental values. |
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Oliveira, Heibbe Cristhian Benedito dehttp://lattes.cnpq.br/5995553993631378Oliveira, Heibbe Cristhian Benedito deFranco Junior, AdolfoGargano, Ricardohttp://lattes.cnpq.br/2621391557286636Souza, Shamon Henrique Feitosa de2023-04-03T13:25:28Z2023-04-03T13:25:28Z2023-02-23SOUZA, S. H. F. Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial. 2023. 68 f. Dissertação (Mestrado em Química) - Universidade Federal de Goiás, Goiânia, 2023.http://repositorio.bc.ufg.br/tede/handle/tede/12711In this work, we investigated the photophysical properties of four recently synthesized peptoids employing Quantum Chemistry calculations. The environment in which the solute is inserted can directly influence its properties, as the interactions of the solute with other molecules directly affect the geometric and electronic structure of the entire system. Therefore, in this work we use explicit solvation methods, in which each solvent molecule is explicitly treated and the total contribution of solvent molecules is included in the system, thus providing a better approximation between theoretical and experimental values. We studied the effect of explicit solvent treatment on the electronic properties of fluorescent peptoids, solvated in five different solvents, through computer simulations using a hybrid methodology (QM/MM). Sequentially to the Monte Carlo calculations (ASEC via DICE program) ab initio quantum calculations were performed in which we used several exchange-correlation functionals in order to identify which is the most suitable for the studied peptoids and analogous systems. The results obtained via theoretical calculations were compared with the experimental results published by Wender et al. (2016). With that, we developed a computational protocol comparable to the experimental values.O presente projeto foi baseado na aplicação de cálculos de Química Quântica Computacional para a investigar propriedades fotofísicas de quatro peptóides recentemente sintetizados. O ambiente em que está inserido o soluto pode influenciar diretamente em suas propriedades, pois as interações do soluto com as demais moléculas afetam diretamente a estrutura geométrica e eletrônica de todo o sistema. Portanto, neste trabalho utilizamos de métodos explícitos de solvatação, em que cada molécula de solvente é explicitamente tratada e a contribuição total das moléculas de solvente é incluída no sistema, proporcionando assim uma melhor aproximação entre os valores teóricos e experimentais. Estudamos o efeito do tratamento explícito de solvente nas propriedades eletrônicas de peptóides fluorescentes, solvatados em cinco diferentes solventes, por meio de simulações computacionais utilizando uma metodologia híbrida (QM/MM). Sequencialmente aos cálculos de Monte Carlo (ASEC via programa DICE) foram realizados cálculos quânticos ab initio em que utilizamos vários funcionais de troca-correlação com o objetivo de identificar qual é o mais adequado para os peptóides estudados e sistemas análogos. Os resultados obtidos via cálculos teóricos foram comparados com os resultados experimentais publicados por Wender et al. (2016). Com isso, desenvolvemos um protocolo computacional comparável aos valores experimentais.porUniversidade Federal de GoiásPrograma de Pós-graduação em Química (IQ)UFGBrasilInstituto de Química - IQ (RMG)Attribution-NonCommercial-NoDerivatives 4.0 Internationalinfo:eu-repo/semantics/openAccessPeptóidesQuímica quânticaDFTSolventePropriedades fotofísicasASECPeptoidsQuantum chemistryDFTSolventPhotophysical propertiesASECOUTROSEfeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencialExplicit solvatation effect on the electronic properties of fluorescent peptoids via sequential QM/MM methodologyinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis8450050050029952reponame:Repositório Institucional da UFGinstname:Universidade Federal de Goiás (UFG)instacron:UFGCC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8805http://repositorio.bc.ufg.br/tede/bitstreams/fedcd71d-41f7-4b34-ad84-4f7679bb8670/download4460e5956bc1d1639be9ae6146a50347MD52ORIGINALDissertação - Shamon Henrique Feitosa de Souza - 2023.pdfDissertação - Shamon Henrique Feitosa de Souza - 2023.pdfapplication/pdf3919554http://repositorio.bc.ufg.br/tede/bitstreams/0980338d-c49d-4d4d-a604-8f49480e32dd/download862e7283eef27d22ab86a5a8f7b60a3bMD53LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://repositorio.bc.ufg.br/tede/bitstreams/c265a137-6e12-4b69-afa5-cdfb8562ffe5/download8a4605be74aa9ea9d79846c1fba20a33MD51tede/127112023-04-03 10:25:28.226http://creativecommons.org/licenses/by-nc-nd/4.0/Attribution-NonCommercial-NoDerivatives 4.0 Internationalopen.accessoai:repositorio.bc.ufg.br:tede/12711http://repositorio.bc.ufg.br/tedeRepositório InstitucionalPUBhttps://repositorio.bc.ufg.br/tedeserver/oai/requestgrt.bc@ufg.bropendoar:oai:repositorio.bc.ufg.br:tede/12342023-04-03T13:25:28Repositório Institucional da UFG - Universidade Federal de Goiás (UFG)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 |
| dc.title.pt_BR.fl_str_mv |
Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial |
| dc.title.alternative.eng.fl_str_mv |
Explicit solvatation effect on the electronic properties of fluorescent peptoids via sequential QM/MM methodology |
| title |
Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial |
| spellingShingle |
Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial Souza, Shamon Henrique Feitosa de Peptóides Química quântica DFT Solvente Propriedades fotofísicas ASEC Peptoids Quantum chemistry DFT Solvent Photophysical properties ASEC OUTROS |
| title_short |
Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial |
| title_full |
Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial |
| title_fullStr |
Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial |
| title_full_unstemmed |
Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial |
| title_sort |
Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial |
| author |
Souza, Shamon Henrique Feitosa de |
| author_facet |
Souza, Shamon Henrique Feitosa de |
| author_role |
author |
| dc.contributor.advisor1.fl_str_mv |
Oliveira, Heibbe Cristhian Benedito de |
| dc.contributor.advisor1Lattes.fl_str_mv |
http://lattes.cnpq.br/5995553993631378 |
| dc.contributor.referee1.fl_str_mv |
Oliveira, Heibbe Cristhian Benedito de |
| dc.contributor.referee2.fl_str_mv |
Franco Junior, Adolfo |
| dc.contributor.referee3.fl_str_mv |
Gargano, Ricardo |
| dc.contributor.authorLattes.fl_str_mv |
http://lattes.cnpq.br/2621391557286636 |
| dc.contributor.author.fl_str_mv |
Souza, Shamon Henrique Feitosa de |
| contributor_str_mv |
Oliveira, Heibbe Cristhian Benedito de Oliveira, Heibbe Cristhian Benedito de Franco Junior, Adolfo Gargano, Ricardo |
| dc.subject.por.fl_str_mv |
Peptóides Química quântica DFT Solvente Propriedades fotofísicas ASEC |
| topic |
Peptóides Química quântica DFT Solvente Propriedades fotofísicas ASEC Peptoids Quantum chemistry DFT Solvent Photophysical properties ASEC OUTROS |
| dc.subject.eng.fl_str_mv |
Peptoids Quantum chemistry DFT Solvent Photophysical properties ASEC |
| dc.subject.cnpq.fl_str_mv |
OUTROS |
| description |
In this work, we investigated the photophysical properties of four recently synthesized peptoids employing Quantum Chemistry calculations. The environment in which the solute is inserted can directly influence its properties, as the interactions of the solute with other molecules directly affect the geometric and electronic structure of the entire system. Therefore, in this work we use explicit solvation methods, in which each solvent molecule is explicitly treated and the total contribution of solvent molecules is included in the system, thus providing a better approximation between theoretical and experimental values. We studied the effect of explicit solvent treatment on the electronic properties of fluorescent peptoids, solvated in five different solvents, through computer simulations using a hybrid methodology (QM/MM). Sequentially to the Monte Carlo calculations (ASEC via DICE program) ab initio quantum calculations were performed in which we used several exchange-correlation functionals in order to identify which is the most suitable for the studied peptoids and analogous systems. The results obtained via theoretical calculations were compared with the experimental results published by Wender et al. (2016). With that, we developed a computational protocol comparable to the experimental values. |
| publishDate |
2023 |
| dc.date.accessioned.fl_str_mv |
2023-04-03T13:25:28Z |
| dc.date.available.fl_str_mv |
2023-04-03T13:25:28Z |
| dc.date.issued.fl_str_mv |
2023-02-23 |
| dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
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masterThesis |
| status_str |
publishedVersion |
| dc.identifier.citation.fl_str_mv |
SOUZA, S. H. F. Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial. 2023. 68 f. Dissertação (Mestrado em Química) - Universidade Federal de Goiás, Goiânia, 2023. |
| dc.identifier.uri.fl_str_mv |
http://repositorio.bc.ufg.br/tede/handle/tede/12711 |
| identifier_str_mv |
SOUZA, S. H. F. Efeito de solvatação explícita nas propriedades eletrônicas de peptóides fluorescentes via metodologia QM/MM sequencial. 2023. 68 f. Dissertação (Mestrado em Química) - Universidade Federal de Goiás, Goiânia, 2023. |
| url |
http://repositorio.bc.ufg.br/tede/handle/tede/12711 |
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por |
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por |
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84 |
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500 500 500 |
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29 |
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952 |
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Attribution-NonCommercial-NoDerivatives 4.0 International info:eu-repo/semantics/openAccess |
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Attribution-NonCommercial-NoDerivatives 4.0 International |
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openAccess |
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Universidade Federal de Goiás |
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Programa de Pós-graduação em Química (IQ) |
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UFG |
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Brasil |
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Instituto de Química - IQ (RMG) |
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Universidade Federal de Goiás |
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