Phenomenological Renormalization Group Applications to Brain Data

Detalhes bibliográficos
Ano de defesa: 2024
Autor(a) principal: CASTRO, Daniel Miranda
Orientador(a): COPELLI, Mauro
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: eng
Instituição de defesa: Universidade Federal de Pernambuco
Programa de Pós-Graduação: Programa de Pos Graduacao em Fisica
Departamento: Não Informado pela instituição
País: Brasil
Palavras-chave em Português:
Link de acesso: https://repositorio.ufpe.br/handle/123456789/60538
Resumo: The critical brain hypothesis has emerged in the last decades as a fruitful theoretical framework for understanding collective neuronal phenomena. Lending support to the idea that the brain operates near a phase transition, Beggs and Plenz were the first to report experimentally recorded neuronal avalanches, whose distributions coincide with the mean-field directed percolation (DP) universality class, which comprises a variety of models in which a phase transition occurs between an absorbing (silent) and an active phase. However, this hypothesis is highly debated, as neuronal avalanches analyses and other common statistical mechanics tools may struggle with challenges ubiquitous in living systems, such as subsampling and the absence of an explicit model for a complete theory of neuronal dynamics. In this context, Meshulam et al. recently proposed a phenomenological renormalization group (PRG) method to deal with neural networks with a model independent analysis. The procedure consists of recursively manipulating the data, obtaining an increasingly coarse-grained description of the activity after each iteration. Under a critical regime, non-trivial correlations and scale-free behavior should be unveiled as we simplify our description. This can be inferred from a series of statistical features of the data, which lead us to different scaling relations. Here, we apply the PRG in two different experimental setups: spiking data from the anesthetized rat visual cortex and functional magnetic resonance imaging (fMRI) time series from young and aging humans. In the first, we investigate the interplay between scale invariance and cortical states, as assessed by populational spiking variability coefficient of variation (CV). In the latter, we find empirical relations between PRG phenomenological exponents and explore connections between those exponents and clinical traits of the experiment participants.
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spelling CASTRO, Daniel Mirandahttp://lattes.cnpq.br/5543326851216731http://lattes.cnpq.br/9400915429521069COPELLI, Mauro2025-02-24T13:11:28Z2025-02-24T13:11:28Z2024-08-22CASTRO, Daniel Miranda. Phenomenological Renormalization Group Applications to Brain Data. 2024. Tese (Doutorado em Física) – Universidade Federal de Pernambuco, Recife, 2024.https://repositorio.ufpe.br/handle/123456789/60538The critical brain hypothesis has emerged in the last decades as a fruitful theoretical framework for understanding collective neuronal phenomena. Lending support to the idea that the brain operates near a phase transition, Beggs and Plenz were the first to report experimentally recorded neuronal avalanches, whose distributions coincide with the mean-field directed percolation (DP) universality class, which comprises a variety of models in which a phase transition occurs between an absorbing (silent) and an active phase. However, this hypothesis is highly debated, as neuronal avalanches analyses and other common statistical mechanics tools may struggle with challenges ubiquitous in living systems, such as subsampling and the absence of an explicit model for a complete theory of neuronal dynamics. In this context, Meshulam et al. recently proposed a phenomenological renormalization group (PRG) method to deal with neural networks with a model independent analysis. The procedure consists of recursively manipulating the data, obtaining an increasingly coarse-grained description of the activity after each iteration. Under a critical regime, non-trivial correlations and scale-free behavior should be unveiled as we simplify our description. This can be inferred from a series of statistical features of the data, which lead us to different scaling relations. Here, we apply the PRG in two different experimental setups: spiking data from the anesthetized rat visual cortex and functional magnetic resonance imaging (fMRI) time series from young and aging humans. In the first, we investigate the interplay between scale invariance and cortical states, as assessed by populational spiking variability coefficient of variation (CV). In the latter, we find empirical relations between PRG phenomenological exponents and explore connections between those exponents and clinical traits of the experiment participants.The critical brain hypothesis has emerged in the last decades as a fruitful theoretical framework for understanding collective neuronal phenomena. Lending support to the idea that the brain operates near a phase transition, Beggs and Plenz were the first to report experimentally recorded neuronal avalanches, whose distributions coincide with the mean-field directed percolation (DP) universality class, which comprises a variety of models in which a phase transition occurs between an absorbing (silent) and an active phase. However, this hypothesis is highly debated, as neuronal avalanches analyses and other common statistical mechanics tools may struggle with challenges ubiquitous in living systems, such as subsampling and the absence of an explicit model for a complete theory of neuronal dynamics. In this context, Meshulam et al. recently proposed a phenomenological renormalization group (PRG) method to deal with neural networks with a model independent analysis. The procedure consists of recursively manipulating the data, obtaining an increasingly coarse-grained description of the activity after each iteration. Under a critical regime, non-trivial correlations and scale-free behavior should be unveiled as we simplify our description. This can be inferred from a series of statistical features of the data, which lead us to different scaling relations. Here, we apply the PRG in two different experimental setups: spiking data from the anesthetized rat visual cortex and functional magnetic resonance imaging (fMRI) time series from young and aging humans. In the first, we investigate the interplay between scale invariance and cortical states, as assessed by populational spiking variability coefficient of variation (CV). In the latter, we find empirical relations between PRG phenomenological exponents and explore connections between those exponents and clinical traits of the experiment participants.engUniversidade Federal de PernambucoPrograma de Pos Graduacao em FisicaUFPEBrasilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessPhenomenological renormalization groupcritical phenomenabrain criticalityPhenomenological Renormalization Group Applications to Brain Datainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisdoutoradoreponame:Repositório Institucional da UFPEinstname:Universidade Federal de Pernambuco (UFPE)instacron:UFPEORIGINALTESE Daniel Miranda Castro.pdfTESE Daniel Miranda Castro.pdfapplication/pdf38286013https://repositorio.ufpe.br/bitstream/123456789/60538/1/TESE%20Daniel%20Miranda%20Castro.pdf779c37d891a2a36f84e484166c0668acMD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8811https://repositorio.ufpe.br/bitstream/123456789/60538/2/license_rdfe39d27027a6cc9cb039ad269a5db8e34MD52LICENSElicense.txtlicense.txttext/plain; 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dc.title.pt_BR.fl_str_mv Phenomenological Renormalization Group Applications to Brain Data
title Phenomenological Renormalization Group Applications to Brain Data
spellingShingle Phenomenological Renormalization Group Applications to Brain Data
CASTRO, Daniel Miranda
Phenomenological renormalization group
critical phenomena
brain criticality
title_short Phenomenological Renormalization Group Applications to Brain Data
title_full Phenomenological Renormalization Group Applications to Brain Data
title_fullStr Phenomenological Renormalization Group Applications to Brain Data
title_full_unstemmed Phenomenological Renormalization Group Applications to Brain Data
title_sort Phenomenological Renormalization Group Applications to Brain Data
author CASTRO, Daniel Miranda
author_facet CASTRO, Daniel Miranda
author_role author
dc.contributor.authorLattes.pt_BR.fl_str_mv http://lattes.cnpq.br/5543326851216731
dc.contributor.advisorLattes.pt_BR.fl_str_mv http://lattes.cnpq.br/9400915429521069
dc.contributor.author.fl_str_mv CASTRO, Daniel Miranda
dc.contributor.advisor1.fl_str_mv COPELLI, Mauro
contributor_str_mv COPELLI, Mauro
dc.subject.por.fl_str_mv Phenomenological renormalization group
critical phenomena
brain criticality
topic Phenomenological renormalization group
critical phenomena
brain criticality
description The critical brain hypothesis has emerged in the last decades as a fruitful theoretical framework for understanding collective neuronal phenomena. Lending support to the idea that the brain operates near a phase transition, Beggs and Plenz were the first to report experimentally recorded neuronal avalanches, whose distributions coincide with the mean-field directed percolation (DP) universality class, which comprises a variety of models in which a phase transition occurs between an absorbing (silent) and an active phase. However, this hypothesis is highly debated, as neuronal avalanches analyses and other common statistical mechanics tools may struggle with challenges ubiquitous in living systems, such as subsampling and the absence of an explicit model for a complete theory of neuronal dynamics. In this context, Meshulam et al. recently proposed a phenomenological renormalization group (PRG) method to deal with neural networks with a model independent analysis. The procedure consists of recursively manipulating the data, obtaining an increasingly coarse-grained description of the activity after each iteration. Under a critical regime, non-trivial correlations and scale-free behavior should be unveiled as we simplify our description. This can be inferred from a series of statistical features of the data, which lead us to different scaling relations. Here, we apply the PRG in two different experimental setups: spiking data from the anesthetized rat visual cortex and functional magnetic resonance imaging (fMRI) time series from young and aging humans. In the first, we investigate the interplay between scale invariance and cortical states, as assessed by populational spiking variability coefficient of variation (CV). In the latter, we find empirical relations between PRG phenomenological exponents and explore connections between those exponents and clinical traits of the experiment participants.
publishDate 2024
dc.date.issued.fl_str_mv 2024-08-22
dc.date.accessioned.fl_str_mv 2025-02-24T13:11:28Z
dc.date.available.fl_str_mv 2025-02-24T13:11:28Z
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dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
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dc.identifier.citation.fl_str_mv CASTRO, Daniel Miranda. Phenomenological Renormalization Group Applications to Brain Data. 2024. Tese (Doutorado em Física) – Universidade Federal de Pernambuco, Recife, 2024.
dc.identifier.uri.fl_str_mv https://repositorio.ufpe.br/handle/123456789/60538
identifier_str_mv CASTRO, Daniel Miranda. Phenomenological Renormalization Group Applications to Brain Data. 2024. Tese (Doutorado em Física) – Universidade Federal de Pernambuco, Recife, 2024.
url https://repositorio.ufpe.br/handle/123456789/60538
dc.language.iso.fl_str_mv eng
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dc.publisher.none.fl_str_mv Universidade Federal de Pernambuco
dc.publisher.program.fl_str_mv Programa de Pos Graduacao em Fisica
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publisher.none.fl_str_mv Universidade Federal de Pernambuco
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