Parametrização do método RM1 para ferro e níquel

Detalhes bibliográficos
Ano de defesa: 2021
Autor(a) principal: Silva, Gustavo de Santana
Orientador(a): Freire, Ricardo Oliveira
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Não Informado pela instituição
Programa de Pós-Graduação: Pós-Graduação em Química
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
RM1
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: https://ri.ufs.br/jspui/handle/riufs/14908
Resumo: The need to study increasingly large systems led to the development of semiempirical methods in the second half of the 20th century. Such systems were impossible to study using ab initio methodologies, which, although more accurate, demand a lot of computational processing. Currently, even with advances related to hardware and software, the calculation of systems containing hundreds or thousands of atoms is not viable using such a methodology. Since 2006 made available to the scientific community, the RM1 currently has parameters for 25 elements, in a list that does not include transition metals. This work presents the parameterization of the RM1 method for geometry calculations of systems containing the metals Iron (Fe) and Nickel (Ni). The reference data were obtained from the Cambridge Structural Database (CSD) crystallographic structures database. A comparison between RM1 and the PM6 and PM7 methods, the only ones that present parameters for these metals, was performed, where RM1 was more accurate. The relative mean errors (RMEs) for the Fe and Ni systems were less than 4% and 5% in connection distances and 3.54 and 8.10 degrees in angles, respectively, when compared with crystallographic data, in addition to being smaller error variability among the evaluated methods. We tried to parameterize the RM1 to also calculate the heats of formation of the systems, however, the unsigned mean errors (UMEs) presented for Fe and Ni systems showed errors, respectively. Finally, we carried out a comparative study between the semiempirical and DFT methods, in which the DFT was more accurate for predicting polyhedra in the evaluated parameters, however, the RM1 showed close accuracy, with a computational cost several thousand times lower
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spelling Silva, Gustavo de SantanaFreire, Ricardo OliveiraDutra, José Diogo de Lisboa2021-12-17T17:09:35Z2021-12-17T17:09:35Z2021-07-28SILVA, Gustavo de Santana. Parametrização do método RM1 para ferro e níquel. 2021. 128 f. Dissertação (Mestrado em Química) – Universidade Federal de Sergipe, São Cristóvão, 2021.https://ri.ufs.br/jspui/handle/riufs/14908The need to study increasingly large systems led to the development of semiempirical methods in the second half of the 20th century. Such systems were impossible to study using ab initio methodologies, which, although more accurate, demand a lot of computational processing. Currently, even with advances related to hardware and software, the calculation of systems containing hundreds or thousands of atoms is not viable using such a methodology. Since 2006 made available to the scientific community, the RM1 currently has parameters for 25 elements, in a list that does not include transition metals. This work presents the parameterization of the RM1 method for geometry calculations of systems containing the metals Iron (Fe) and Nickel (Ni). The reference data were obtained from the Cambridge Structural Database (CSD) crystallographic structures database. A comparison between RM1 and the PM6 and PM7 methods, the only ones that present parameters for these metals, was performed, where RM1 was more accurate. The relative mean errors (RMEs) for the Fe and Ni systems were less than 4% and 5% in connection distances and 3.54 and 8.10 degrees in angles, respectively, when compared with crystallographic data, in addition to being smaller error variability among the evaluated methods. We tried to parameterize the RM1 to also calculate the heats of formation of the systems, however, the unsigned mean errors (UMEs) presented for Fe and Ni systems showed errors, respectively. Finally, we carried out a comparative study between the semiempirical and DFT methods, in which the DFT was more accurate for predicting polyhedra in the evaluated parameters, however, the RM1 showed close accuracy, with a computational cost several thousand times lowerA necessidade do estudo de sistemas cada vez maiores levou ao desenvolvimento de métodos semiempíricos na segunda metade do século XX. Tais sistemas eram impossíveis de serem estudados através de metodologias ab initio, que, embora mais exatas, demandam bastante processamento computacional. Atualmente, mesmo com os avanços relacionados a hardwares e softwares, o cálculo de sistemas contendo centenas ou milhares de átomos é inviável utilizando tal metodologia. Disponibilizado em 2006 para a comunidade cientifica, atualmente, o RM1 possui parâmetros para 25 elementos, dentre os quais não estão os metais de transição. Diante disso, esse trabalho apresenta a parametrização do método RM1 para cálculos de geometria de sistemas contendo os metais Ferro (Fe) e/ou Níquel (Ni). Os dados de referência foram obtidos a partir do banco de dados de estruturas cristalográficas Cambridge Structural Database (CSD). Uma comparação entre RM1 e os métodos PM6 e PM7, os únicos métodos semiempíricos que apresentam parâmetros para estes metais, foi realizada, e o RM1 apresentou maior exatidão. Os erros médios relativos (EMRs) para os sistemas de Fe e Ni foram inferiores a 4% e 5% nas distâncias de ligações e 3,54 e 8,10 graus nos ângulos, respectivamente, quando comparados com os dados cristalográficos, além de apresentar menores variabilidades de erro dentre os métodos avaliados. Buscamos parametrizar o RM1 para também calcular os calores de formação dos sistemas, contudo, os erros médios absolutos (EMAs) apresentados para sistemas de Fe e Ni apresentaram erros, respectivamente, de 72,74 e 77,56 kcal mol-1 . Por fim, realizamos um estudo comparativo entre os métodos semiempíricos e DFT, em que o DFT se apresentou mais exato para a previsão dos poliedros nos parâmetros avaliados, contudo, o RM1 apresentou exatidão próxima, com custo computacional alguns milhares de vezes menor.Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPqSão CristóvãoporQuímicaMetodologia científicaMétodos semiempíricosParametrizaçãoRM1Metais de transiçãoSemiempirical methodsParameterizationTransition metalsCIENCIAS EXATAS E DA TERRA::QUIMICAParametrização do método RM1 para ferro e níquelParameterization of the RM1 method for iron and nickelinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisPós-Graduação em QuímicaUniversidade Federal de Sergipereponame:Repositório Institucional da UFSinstname:Universidade Federal de Sergipe (UFS)instacron:UFSinfo:eu-repo/semantics/openAccessORIGINALGUSTAVO_SANTANA_SILVA.pdfGUSTAVO_SANTANA_SILVA.pdfapplication/pdf2977521https://ri.ufs.br/jspui/bitstream/riufs/14908/2/GUSTAVO_SANTANA_SILVA.pdfd49dcbdc891a0712106a76ccb4d7f5a6MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-81475https://ri.ufs.br/jspui/bitstream/riufs/14908/1/license.txt098cbbf65c2c15e1fb2e49c5d306a44cMD51TEXTGUSTAVO_SANTANA_SILVA.pdf.txtGUSTAVO_SANTANA_SILVA.pdf.txtExtracted texttext/plain189114https://ri.ufs.br/jspui/bitstream/riufs/14908/3/GUSTAVO_SANTANA_SILVA.pdf.txtbaf92801636035feb2370f4067d807d3MD53THUMBNAILGUSTAVO_SANTANA_SILVA.pdf.jpgGUSTAVO_SANTANA_SILVA.pdf.jpgGenerated Thumbnailimage/jpeg1347https://ri.ufs.br/jspui/bitstream/riufs/14908/4/GUSTAVO_SANTANA_SILVA.pdf.jpg40ab3a156e812cf30cc304ed8d882328MD54riufs/149082021-12-17 14:09:35.991oai:ufs.br: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Repositório InstitucionalPUBhttps://ri.ufs.br/oai/requestrepositorio@academico.ufs.bropendoar:2021-12-17T17:09:35Repositório Institucional da UFS - Universidade Federal de Sergipe (UFS)false
dc.title.pt_BR.fl_str_mv Parametrização do método RM1 para ferro e níquel
dc.title.alternative.eng.fl_str_mv Parameterization of the RM1 method for iron and nickel
title Parametrização do método RM1 para ferro e níquel
spellingShingle Parametrização do método RM1 para ferro e níquel
Silva, Gustavo de Santana
Química
Metodologia científica
Métodos semiempíricos
Parametrização
RM1
Metais de transição
Semiempirical methods
Parameterization
Transition metals
CIENCIAS EXATAS E DA TERRA::QUIMICA
title_short Parametrização do método RM1 para ferro e níquel
title_full Parametrização do método RM1 para ferro e níquel
title_fullStr Parametrização do método RM1 para ferro e níquel
title_full_unstemmed Parametrização do método RM1 para ferro e níquel
title_sort Parametrização do método RM1 para ferro e níquel
author Silva, Gustavo de Santana
author_facet Silva, Gustavo de Santana
author_role author
dc.contributor.author.fl_str_mv Silva, Gustavo de Santana
dc.contributor.advisor1.fl_str_mv Freire, Ricardo Oliveira
dc.contributor.advisor-co1.fl_str_mv Dutra, José Diogo de Lisboa
contributor_str_mv Freire, Ricardo Oliveira
Dutra, José Diogo de Lisboa
dc.subject.por.fl_str_mv Química
Metodologia científica
Métodos semiempíricos
Parametrização
RM1
Metais de transição
topic Química
Metodologia científica
Métodos semiempíricos
Parametrização
RM1
Metais de transição
Semiempirical methods
Parameterization
Transition metals
CIENCIAS EXATAS E DA TERRA::QUIMICA
dc.subject.eng.fl_str_mv Semiempirical methods
Parameterization
Transition metals
dc.subject.cnpq.fl_str_mv CIENCIAS EXATAS E DA TERRA::QUIMICA
description The need to study increasingly large systems led to the development of semiempirical methods in the second half of the 20th century. Such systems were impossible to study using ab initio methodologies, which, although more accurate, demand a lot of computational processing. Currently, even with advances related to hardware and software, the calculation of systems containing hundreds or thousands of atoms is not viable using such a methodology. Since 2006 made available to the scientific community, the RM1 currently has parameters for 25 elements, in a list that does not include transition metals. This work presents the parameterization of the RM1 method for geometry calculations of systems containing the metals Iron (Fe) and Nickel (Ni). The reference data were obtained from the Cambridge Structural Database (CSD) crystallographic structures database. A comparison between RM1 and the PM6 and PM7 methods, the only ones that present parameters for these metals, was performed, where RM1 was more accurate. The relative mean errors (RMEs) for the Fe and Ni systems were less than 4% and 5% in connection distances and 3.54 and 8.10 degrees in angles, respectively, when compared with crystallographic data, in addition to being smaller error variability among the evaluated methods. We tried to parameterize the RM1 to also calculate the heats of formation of the systems, however, the unsigned mean errors (UMEs) presented for Fe and Ni systems showed errors, respectively. Finally, we carried out a comparative study between the semiempirical and DFT methods, in which the DFT was more accurate for predicting polyhedra in the evaluated parameters, however, the RM1 showed close accuracy, with a computational cost several thousand times lower
publishDate 2021
dc.date.accessioned.fl_str_mv 2021-12-17T17:09:35Z
dc.date.available.fl_str_mv 2021-12-17T17:09:35Z
dc.date.issued.fl_str_mv 2021-07-28
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv SILVA, Gustavo de Santana. Parametrização do método RM1 para ferro e níquel. 2021. 128 f. Dissertação (Mestrado em Química) – Universidade Federal de Sergipe, São Cristóvão, 2021.
dc.identifier.uri.fl_str_mv https://ri.ufs.br/jspui/handle/riufs/14908
identifier_str_mv SILVA, Gustavo de Santana. Parametrização do método RM1 para ferro e níquel. 2021. 128 f. Dissertação (Mestrado em Química) – Universidade Federal de Sergipe, São Cristóvão, 2021.
url https://ri.ufs.br/jspui/handle/riufs/14908
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dc.publisher.program.fl_str_mv Pós-Graduação em Química
dc.publisher.initials.fl_str_mv Universidade Federal de Sergipe
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