Variabilidade genética de Aedes aegypti (Diptera: Culicidae) no estado de Sergipe

Detalhes bibliográficos
Ano de defesa: 2012
Autor(a) principal: Steffler, Lizandra Makowski lattes
Orientador(a): Santos, Roseli La Corte dos lattes
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal de Sergipe
Programa de Pós-Graduação: Pós-Graduação em Biologia Parasitária
Departamento: Não Informado pela instituição
País: BR
Palavras-chave em Português:
SNP
Palavras-chave em Inglês:
SNP
Área do conhecimento CNPq:
Link de acesso: https://ri.ufs.br/handle/riufs/3247
Resumo: Aedes aegypti is an important vector of human arboviruses as dengue, yellow fever and chikungunya in several tropical and subtropical countries. Studies of population genetic on Ae. aegypti has been growing in recent years and several molecular markers has been used to assess genetic variability of this vector. Among the molecular markers used is the ISSR (Inter-Simple Sequence Repeat) based on the use of nonspecific primers as microsatellites, and SNP (Single Nucleotide Polymorphism) that detect single base mutations in the chain of nitrogenous bases. The aim of this study was to determine the genetic variability in Ae. aegyti populations in the State of Sergipe through the molecular markers ISSR and SNP. Mosquito samples were caught using ovitraps in seven cities of Sergipe State: Canindé de São Francisco, Carira, Pinhão, Neópolis, Maruim, Aracaju and Umbaúba. DNA from adult mosquitoes was extracted and amplified with two ISSR primers and nine SNP markers. For ISSR marker analysis AMOVA resulted in 32% of genetic variation among populations and 68% within the population. The value of phiST was equal to 0.3225 indicating high genetic structure among populations. The dendrogram generated by UPGMA grouped the populations into two clusters that showed 61% similarity. The Mantel test by means of partial correlation between genetic distances and road excluding the interference of population size of the city was significant (r = -0.5399, p = 0.0359), assuming the occurrence of gene flow between Ae. aegypti populations passively by human action. For the marker SNP AMOVA analysis revealed genetic differentiation of FST = 0.07354 (p <0.01) and genetic diversity of 7.35% among populations. The analysis, showed the existence of two clusters based on genotypic similarities. For this analysis we found genetic differentiation between populations located in the countryside and on the coast. Both markers were efficient for the genetic study of natural populations of Ae. aegypti and able to differentiate among samples on a geographic scale from 30km to 240km.
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spelling Steffler, Lizandra Makowskihttp://lattes.cnpq.br/1043836205907613Santos, Roseli La Corte doshttp://lattes.cnpq.br/48151043359225552017-09-25T13:59:16Z2017-09-25T13:59:16Z2012-07-30https://ri.ufs.br/handle/riufs/3247Aedes aegypti is an important vector of human arboviruses as dengue, yellow fever and chikungunya in several tropical and subtropical countries. Studies of population genetic on Ae. aegypti has been growing in recent years and several molecular markers has been used to assess genetic variability of this vector. Among the molecular markers used is the ISSR (Inter-Simple Sequence Repeat) based on the use of nonspecific primers as microsatellites, and SNP (Single Nucleotide Polymorphism) that detect single base mutations in the chain of nitrogenous bases. The aim of this study was to determine the genetic variability in Ae. aegyti populations in the State of Sergipe through the molecular markers ISSR and SNP. Mosquito samples were caught using ovitraps in seven cities of Sergipe State: Canindé de São Francisco, Carira, Pinhão, Neópolis, Maruim, Aracaju and Umbaúba. DNA from adult mosquitoes was extracted and amplified with two ISSR primers and nine SNP markers. For ISSR marker analysis AMOVA resulted in 32% of genetic variation among populations and 68% within the population. The value of phiST was equal to 0.3225 indicating high genetic structure among populations. The dendrogram generated by UPGMA grouped the populations into two clusters that showed 61% similarity. The Mantel test by means of partial correlation between genetic distances and road excluding the interference of population size of the city was significant (r = -0.5399, p = 0.0359), assuming the occurrence of gene flow between Ae. aegypti populations passively by human action. For the marker SNP AMOVA analysis revealed genetic differentiation of FST = 0.07354 (p <0.01) and genetic diversity of 7.35% among populations. The analysis, showed the existence of two clusters based on genotypic similarities. For this analysis we found genetic differentiation between populations located in the countryside and on the coast. Both markers were efficient for the genetic study of natural populations of Ae. aegypti and able to differentiate among samples on a geographic scale from 30km to 240km.Aedes aegypti é um importante vetor de graves arboviroses humanas como dengue, febre amarela e chikungunya em diversos países tropicais e subtropicais. O número de estudos envolvendo genética de população com Ae. aegypti vem crescendo nos últimos anos, sendo utilizados diversos marcadores moleculares para avaliar a variabilidade genética deste vetor. Entre os marcadores utilizados estão os ISSR (Inter-Simple Sequence Repeat) baseados na utilização de microssatélites como primers inespecíficos, e SNP (Single Nucleotide Polymorphism) que detectam mutações em bases únicas da cadeia de bases nitrogenadas. O objetivo do estudo foi determinar a variabilidade genética de populações de Ae. aegyti do estado de Sergipe por meio dos marcadores moleculares ISSR e SNP. Foram capturadas amostras do mosquito por meio de armadilhas ovitrampas de sete municípios sergipanos: Canindé de São Francisco, Carira, Pinhão, Neópolis, Maruim, Aracaju e Umbaúba. Para avaliação do polimorfismo genético foi extraído o DNA do mosquito adulto e amplificado com dois primers para ISSR e nove marcadores de SNP. Para o marcador ISSR a análise AMOVA resultou em 32% de variação genética entre as populações e 68% dentro das populações. O valor de phiST foi igual a 0,3225 indicando alta estruturação genética entre as populações. O dendograma gerado pelo método UPGMA agrupou as populações em dois clusters que apresentaram 61% de similaridade. O teste de Mantel por meio de correlação parcial entre as distâncias genética e rodoviária excluindo a interferência do tamanho da cidade foi significativo (r = - 0,5399 e p = 0,0359), supondo a ocorrência de fluxo gênico entre as populações de Ae. aegypti de forma passiva pela ação humana. Para o marcador SNP a análise AMOVA revelou diferenciação genética entre as populações de FST = 0,07354 (p < 0,01) e diversidade genética entre as populações de 7,35%. A análise por meio do software Structure 2.3.1, evidenciou a existência de dois clusters baseados em semelhanças genotípicas. Por essa análise foi observada uma diferenciação genética entre populações localizadas no interior do estado e populações mais próximas do litoral. Ambos marcadores moleculares foram eficientes no estudo genético de populações naturais de Ae. aegypti, sendo possível diferenciar amostras numa escala geográfica entre 30km a 240km.application/pdfporUniversidade Federal de SergipePós-Graduação em Biologia ParasitáriaUFSBRAedes aegyptiVariabilidade genéticaISSRSNPAedes aegyptiGenetic variationISSRSNPCNPQ::CIENCIAS BIOLOGICASVariabilidade genética de Aedes aegypti (Diptera: Culicidae) no estado de SergipeGENETIC VARIATION IN AEDES AEGYPTI (DIPTERA: CULICIDAE) POPULATIONS IN THE STATE OF SERGIPE.info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSinstname:Universidade Federal de Sergipe (UFS)instacron:UFSORIGINALLIZANDRA_MAKOWSKI_STEFFLER.pdfapplication/pdf9054239https://ri.ufs.br/jspui/bitstream/riufs/3247/1/LIZANDRA_MAKOWSKI_STEFFLER.pdfe6c7143b7978937a15aa3a1af589e442MD51TEXTLIZANDRA_MAKOWSKI_STEFFLER.pdf.txtLIZANDRA_MAKOWSKI_STEFFLER.pdf.txtExtracted texttext/plain119996https://ri.ufs.br/jspui/bitstream/riufs/3247/2/LIZANDRA_MAKOWSKI_STEFFLER.pdf.txt1c1f3df0bdb15e017ff0b82064fc5adcMD52THUMBNAILLIZANDRA_MAKOWSKI_STEFFLER.pdf.jpgLIZANDRA_MAKOWSKI_STEFFLER.pdf.jpgGenerated Thumbnailimage/jpeg1312https://ri.ufs.br/jspui/bitstream/riufs/3247/3/LIZANDRA_MAKOWSKI_STEFFLER.pdf.jpgb41ff66c24876a489bc401ff7d5c5ec7MD53riufs/32472017-11-24 21:27:58.886oai:oai:ri.ufs.br:repo_01:riufs/3247Repositório InstitucionalPUBhttps://ri.ufs.br/oai/requestrepositorio@academico.ufs.bropendoar:2017-11-25T00:27:58Repositório Institucional da UFS - Universidade Federal de Sergipe (UFS)false
dc.title.por.fl_str_mv Variabilidade genética de Aedes aegypti (Diptera: Culicidae) no estado de Sergipe
dc.title.alternative.eng.fl_str_mv GENETIC VARIATION IN AEDES AEGYPTI (DIPTERA: CULICIDAE) POPULATIONS IN THE STATE OF SERGIPE.
title Variabilidade genética de Aedes aegypti (Diptera: Culicidae) no estado de Sergipe
spellingShingle Variabilidade genética de Aedes aegypti (Diptera: Culicidae) no estado de Sergipe
Steffler, Lizandra Makowski
Aedes aegypti
Variabilidade genética
ISSR
SNP
Aedes aegypti
Genetic variation
ISSR
SNP
CNPQ::CIENCIAS BIOLOGICAS
title_short Variabilidade genética de Aedes aegypti (Diptera: Culicidae) no estado de Sergipe
title_full Variabilidade genética de Aedes aegypti (Diptera: Culicidae) no estado de Sergipe
title_fullStr Variabilidade genética de Aedes aegypti (Diptera: Culicidae) no estado de Sergipe
title_full_unstemmed Variabilidade genética de Aedes aegypti (Diptera: Culicidae) no estado de Sergipe
title_sort Variabilidade genética de Aedes aegypti (Diptera: Culicidae) no estado de Sergipe
author Steffler, Lizandra Makowski
author_facet Steffler, Lizandra Makowski
author_role author
dc.contributor.author.fl_str_mv Steffler, Lizandra Makowski
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/1043836205907613
dc.contributor.advisor1.fl_str_mv Santos, Roseli La Corte dos
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/4815104335922555
contributor_str_mv Santos, Roseli La Corte dos
dc.subject.por.fl_str_mv Aedes aegypti
Variabilidade genética
ISSR
SNP
topic Aedes aegypti
Variabilidade genética
ISSR
SNP
Aedes aegypti
Genetic variation
ISSR
SNP
CNPQ::CIENCIAS BIOLOGICAS
dc.subject.eng.fl_str_mv Aedes aegypti
Genetic variation
ISSR
SNP
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS BIOLOGICAS
description Aedes aegypti is an important vector of human arboviruses as dengue, yellow fever and chikungunya in several tropical and subtropical countries. Studies of population genetic on Ae. aegypti has been growing in recent years and several molecular markers has been used to assess genetic variability of this vector. Among the molecular markers used is the ISSR (Inter-Simple Sequence Repeat) based on the use of nonspecific primers as microsatellites, and SNP (Single Nucleotide Polymorphism) that detect single base mutations in the chain of nitrogenous bases. The aim of this study was to determine the genetic variability in Ae. aegyti populations in the State of Sergipe through the molecular markers ISSR and SNP. Mosquito samples were caught using ovitraps in seven cities of Sergipe State: Canindé de São Francisco, Carira, Pinhão, Neópolis, Maruim, Aracaju and Umbaúba. DNA from adult mosquitoes was extracted and amplified with two ISSR primers and nine SNP markers. For ISSR marker analysis AMOVA resulted in 32% of genetic variation among populations and 68% within the population. The value of phiST was equal to 0.3225 indicating high genetic structure among populations. The dendrogram generated by UPGMA grouped the populations into two clusters that showed 61% similarity. The Mantel test by means of partial correlation between genetic distances and road excluding the interference of population size of the city was significant (r = -0.5399, p = 0.0359), assuming the occurrence of gene flow between Ae. aegypti populations passively by human action. For the marker SNP AMOVA analysis revealed genetic differentiation of FST = 0.07354 (p <0.01) and genetic diversity of 7.35% among populations. The analysis, showed the existence of two clusters based on genotypic similarities. For this analysis we found genetic differentiation between populations located in the countryside and on the coast. Both markers were efficient for the genetic study of natural populations of Ae. aegypti and able to differentiate among samples on a geographic scale from 30km to 240km.
publishDate 2012
dc.date.issued.fl_str_mv 2012-07-30
dc.date.accessioned.fl_str_mv 2017-09-25T13:59:16Z
dc.date.available.fl_str_mv 2017-09-25T13:59:16Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.publisher.program.fl_str_mv Pós-Graduação em Biologia Parasitária
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dc.publisher.country.fl_str_mv BR
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