Um estudo teórico da doxorrubicina: espectroscopia no UV/Vis e reatividade

Detalhes bibliográficos
Ano de defesa: 2013
Autor(a) principal: Florêncio e Silva, Edvonaldo
Orientador(a): Costa Júnior, Nivan Bezerra da
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Não Informado pela instituição
Programa de Pós-Graduação: Pós-Graduação em Química
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: https://ri.ufs.br/handle/riufs/6100
Resumo: The doxorubicin (DOX) assumes a prominent position among the drugs widely applied in treatment human cancer. This chemotherapeutic presents efficiency in the regression of various neoplasms, although adverse reactions may occur. As a result several strategies have been developed to reduce the adverse effects caused by the continued use of DOX. One of these strategy is the incorporation of doxorubicin into MOF (Metal Organic Framework), since these materials can act as excellent carriers of drugs. The color change exhibited by doxorubicin as a function of pH, or even possibly when adsorbed in MOF, motivated the present work. This work consists in finding the possible factors that culminate in color change presented by DOX. This way, calculations involving the reactivity, and the UV/Vis spectroscopy of the possible tautomeric species of doxorubicin were performed. Thus, we applied the semiempirical methods, AM1, PM3, PM6 and RM1, and also DFT. We used the method INDO/S-CIS to calculate the spectroscopic of ground state geometries of various tautomer. All calculations revealed DOX1 as the most stable and DOX2 as the most unstable for protonated species. The method PM6 method was the more similar to the DFT by comparing the absorption spectra of DOX1 as well as the relative stabilities of the tautomers. The relative energies between deprotonated tautomers calculated by applied methods were smaller than protonated species, because the deprotonated tautomers denote considerable structural similarities between them. The reactivity study showed that the methods AM1 andPM3 exhibit the same qualitative behavior about the prediction of the transition state structure involved in each proton transfer reaction in the gas phase. The method PM6 resembled more to RM1, being the only exception was the conversion DOX1 → DOX4. Each absorption spectrum calculated from the optimized geometries with the DFT method to the different tautomeric species showed simply a band in the region of longer wavelengths (around 400 nm), which correspond to the visible region. In contrast, the absorption spectra obtained experimentally in acidic showed three bands in the region between 400 to 650 nm, thus cannot be attributed to a single predominant tautomer system, but the simultaneous contributing of all tautomers. The spectroscopic study of deprotonated tautomers, in order to simulate the effect of basic pH, suggests the presence also of the four tautomers deprotonated in the system, thus explaining the appearance of several absorption bands. The spectrum obtained at pH 7 can be explained from the presence of both doxorubicin protonated as deprotonated species. Thus, the application of computational tools proved to be able to elucidate some events associated with spectroscopy and reactivity of doxorubicin.
id UFS-2_d5ced2a037987ad5199da80ebcea9093
oai_identifier_str oai:ufs.br:riufs/6100
network_acronym_str UFS-2
network_name_str Repositório Institucional da UFS
repository_id_str
spelling Florêncio e Silva, EdvonaldoCosta Júnior, Nivan Bezerra da2017-09-27T13:57:42Z2017-09-27T13:57:42Z2013-03-08https://ri.ufs.br/handle/riufs/6100The doxorubicin (DOX) assumes a prominent position among the drugs widely applied in treatment human cancer. This chemotherapeutic presents efficiency in the regression of various neoplasms, although adverse reactions may occur. As a result several strategies have been developed to reduce the adverse effects caused by the continued use of DOX. One of these strategy is the incorporation of doxorubicin into MOF (Metal Organic Framework), since these materials can act as excellent carriers of drugs. The color change exhibited by doxorubicin as a function of pH, or even possibly when adsorbed in MOF, motivated the present work. This work consists in finding the possible factors that culminate in color change presented by DOX. This way, calculations involving the reactivity, and the UV/Vis spectroscopy of the possible tautomeric species of doxorubicin were performed. Thus, we applied the semiempirical methods, AM1, PM3, PM6 and RM1, and also DFT. We used the method INDO/S-CIS to calculate the spectroscopic of ground state geometries of various tautomer. All calculations revealed DOX1 as the most stable and DOX2 as the most unstable for protonated species. The method PM6 method was the more similar to the DFT by comparing the absorption spectra of DOX1 as well as the relative stabilities of the tautomers. The relative energies between deprotonated tautomers calculated by applied methods were smaller than protonated species, because the deprotonated tautomers denote considerable structural similarities between them. The reactivity study showed that the methods AM1 andPM3 exhibit the same qualitative behavior about the prediction of the transition state structure involved in each proton transfer reaction in the gas phase. The method PM6 resembled more to RM1, being the only exception was the conversion DOX1 → DOX4. Each absorption spectrum calculated from the optimized geometries with the DFT method to the different tautomeric species showed simply a band in the region of longer wavelengths (around 400 nm), which correspond to the visible region. In contrast, the absorption spectra obtained experimentally in acidic showed three bands in the region between 400 to 650 nm, thus cannot be attributed to a single predominant tautomer system, but the simultaneous contributing of all tautomers. The spectroscopic study of deprotonated tautomers, in order to simulate the effect of basic pH, suggests the presence also of the four tautomers deprotonated in the system, thus explaining the appearance of several absorption bands. The spectrum obtained at pH 7 can be explained from the presence of both doxorubicin protonated as deprotonated species. Thus, the application of computational tools proved to be able to elucidate some events associated with spectroscopy and reactivity of doxorubicin.Dentre os fármacos largamente aplicados na prática oncológica humana, a doxorrubicina (DOX) assume uma posição de destaque. Apesar de este quimioterápico apresentar eficiência na regressão de várias neoplasias, reações adversas podem surgir. Em decorrência disso várias estratégias vêm sendo desenvolvidas para reduzir os efeitos adversos provocados pelo uso contínuo da DOX. Uma dessas estratégias consiste na incorporação da doxorrubicina em MOF s (Metal Organic Framework), uma vez que estes materiais podem atuar como excelentes carreadores de fármacos. A mudança de coloração exibida pela doxorrubicina como função do pH, ou até mesmo quando possivelmente adsorvida na MOF, motivou a realização do presente trabalho, o qual consiste na busca dos possíveis fatores que culminam na mudança de coloração apresentada pela DOX. Diante isso, cálculos envolvendo a reatividade, assim como, a espectroscopia UV/Vis das possíveis espécies tautoméricas da doxorrubicina foram realizados. Para tanto, foram aplicados os métodos semiempíricos, AM1, PM3, PM6 e RM1, e também DFT. Para realização dos cálculos espectroscópicos das geometrias no estado fundamental dos diferentes tautômeros da doxorrubicina, foi utilizado o método INDO/S-CIS. Para as espécies protonadas, todos os cálculos revelaram a DOX1 como sendo a espécie tautomérica mais estável e a DOX2 como sendo a mais instável. O método PM6 foi o método que se mostrou mais similar ao DFT, comparando os espectros de absorção da DOX1, assim como as estabilidades relativas entre os tautômeros. As energias relativas entre os tautômeros desprotonados calculadas pelos diferentes métodos aplicados foram menores para os protonados, pois os tautômeros desprotonados denotam maiores similaridades estruturais entre si. O estudo de reatividade mostrou que os métodos PM3 e AM1 apresentam o mesmo comportamento qualitativo quanto à predição da estrutura do estado de transição envolvido em cada reação de transferência de próton em fase gasosa. O método PM6 assemelhou-se mais ao RM1, divergindo apenas na conversão DOX1 → DOX4. Cada espectro de absorção calculado a partir das geometrias otimizadas com o método DFT para as diferentes espécies tautoméricas apresentou simplesmente uma banda na região de comprimentos de onda maiores (por volta de 400 nm), as quais equivalem à região do visível. Diferentemente, o espectro de absorção obtido experimentalmente em meio ácido apresentou três bandas na região compreendida entre 400 nm a 650 nm, dessa forma não se pode atribuir a predominância de um único tautômero no sistema, mas sim, a contribuição simultânea de todos os tautômeros. O estudo espectroscópico dos tautômeros desprotonados visando simular o efeito do pH básico sugere a presença, também, dos quatro tautômeros desprotonados no sistema, explicando dessa forma o aparecimento das várias bandas de absorção. A atipicidade apresentada pelo espectro obtido a pH 7 pode ser explicado a partir da presença tanto de espécies de doxorrubicina protonadas como desprotonadas. Dessa forma, a aplicação das ferramentas computacionais mostrou-se capaz de elucidar alguns eventos associados a espectroscopia e a reatividade da doxorrubicina.application/pdfporTautomerismoAnálise espectralQuímica computacionalIsomerismo dinâmicoDoxorrubicinaChemistrySpectrum analysisTautomerismCNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICAUm estudo teórico da doxorrubicina: espectroscopia no UV/Vis e reatividadeinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisPós-Graduação em Químicainfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSinstname:Universidade Federal de Sergipe (UFS)instacron:UFSTEXTEDVONALDO_FLORENCIO_SILVA.pdf.txtEDVONALDO_FLORENCIO_SILVA.pdf.txtExtracted texttext/plain101752https://ri.ufs.br/jspui/bitstream/riufs/6100/2/EDVONALDO_FLORENCIO_SILVA.pdf.txt299bdf21215ce3319c6d0c7713d7c2efMD52THUMBNAILEDVONALDO_FLORENCIO_SILVA.pdf.jpgEDVONALDO_FLORENCIO_SILVA.pdf.jpgGenerated Thumbnailimage/jpeg1340https://ri.ufs.br/jspui/bitstream/riufs/6100/3/EDVONALDO_FLORENCIO_SILVA.pdf.jpg9c3ce77faf999e58d129cc3f4f0612c8MD53ORIGINALEDVONALDO_FLORENCIO_SILVA.pdfEDVONALDO_FLORENCIO_SILVA.pdfapplication/pdf1747232https://ri.ufs.br/jspui/bitstream/riufs/6100/1/EDVONALDO_FLORENCIO_SILVA.pdfeb246a38932dce95eb2a587f26a22888MD51riufs/61002019-05-17 18:00:22.855oai:ufs.br:riufs/6100Repositório InstitucionalPUBhttps://ri.ufs.br/oai/requestrepositorio@academico.ufs.bropendoar:2019-05-17T21:00:22Repositório Institucional da UFS - Universidade Federal de Sergipe (UFS)false
dc.title.por.fl_str_mv Um estudo teórico da doxorrubicina: espectroscopia no UV/Vis e reatividade
title Um estudo teórico da doxorrubicina: espectroscopia no UV/Vis e reatividade
spellingShingle Um estudo teórico da doxorrubicina: espectroscopia no UV/Vis e reatividade
Florêncio e Silva, Edvonaldo
Tautomerismo
Análise espectral
Química computacional
Isomerismo dinâmico
Doxorrubicina
Chemistry
Spectrum analysis
Tautomerism
CNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICA
title_short Um estudo teórico da doxorrubicina: espectroscopia no UV/Vis e reatividade
title_full Um estudo teórico da doxorrubicina: espectroscopia no UV/Vis e reatividade
title_fullStr Um estudo teórico da doxorrubicina: espectroscopia no UV/Vis e reatividade
title_full_unstemmed Um estudo teórico da doxorrubicina: espectroscopia no UV/Vis e reatividade
title_sort Um estudo teórico da doxorrubicina: espectroscopia no UV/Vis e reatividade
author Florêncio e Silva, Edvonaldo
author_facet Florêncio e Silva, Edvonaldo
author_role author
dc.contributor.author.fl_str_mv Florêncio e Silva, Edvonaldo
dc.contributor.advisor1.fl_str_mv Costa Júnior, Nivan Bezerra da
contributor_str_mv Costa Júnior, Nivan Bezerra da
dc.subject.por.fl_str_mv Tautomerismo
Análise espectral
Química computacional
Isomerismo dinâmico
Doxorrubicina
topic Tautomerismo
Análise espectral
Química computacional
Isomerismo dinâmico
Doxorrubicina
Chemistry
Spectrum analysis
Tautomerism
CNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICA
dc.subject.eng.fl_str_mv Chemistry
Spectrum analysis
Tautomerism
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICA
description The doxorubicin (DOX) assumes a prominent position among the drugs widely applied in treatment human cancer. This chemotherapeutic presents efficiency in the regression of various neoplasms, although adverse reactions may occur. As a result several strategies have been developed to reduce the adverse effects caused by the continued use of DOX. One of these strategy is the incorporation of doxorubicin into MOF (Metal Organic Framework), since these materials can act as excellent carriers of drugs. The color change exhibited by doxorubicin as a function of pH, or even possibly when adsorbed in MOF, motivated the present work. This work consists in finding the possible factors that culminate in color change presented by DOX. This way, calculations involving the reactivity, and the UV/Vis spectroscopy of the possible tautomeric species of doxorubicin were performed. Thus, we applied the semiempirical methods, AM1, PM3, PM6 and RM1, and also DFT. We used the method INDO/S-CIS to calculate the spectroscopic of ground state geometries of various tautomer. All calculations revealed DOX1 as the most stable and DOX2 as the most unstable for protonated species. The method PM6 method was the more similar to the DFT by comparing the absorption spectra of DOX1 as well as the relative stabilities of the tautomers. The relative energies between deprotonated tautomers calculated by applied methods were smaller than protonated species, because the deprotonated tautomers denote considerable structural similarities between them. The reactivity study showed that the methods AM1 andPM3 exhibit the same qualitative behavior about the prediction of the transition state structure involved in each proton transfer reaction in the gas phase. The method PM6 resembled more to RM1, being the only exception was the conversion DOX1 → DOX4. Each absorption spectrum calculated from the optimized geometries with the DFT method to the different tautomeric species showed simply a band in the region of longer wavelengths (around 400 nm), which correspond to the visible region. In contrast, the absorption spectra obtained experimentally in acidic showed three bands in the region between 400 to 650 nm, thus cannot be attributed to a single predominant tautomer system, but the simultaneous contributing of all tautomers. The spectroscopic study of deprotonated tautomers, in order to simulate the effect of basic pH, suggests the presence also of the four tautomers deprotonated in the system, thus explaining the appearance of several absorption bands. The spectrum obtained at pH 7 can be explained from the presence of both doxorubicin protonated as deprotonated species. Thus, the application of computational tools proved to be able to elucidate some events associated with spectroscopy and reactivity of doxorubicin.
publishDate 2013
dc.date.issued.fl_str_mv 2013-03-08
dc.date.accessioned.fl_str_mv 2017-09-27T13:57:42Z
dc.date.available.fl_str_mv 2017-09-27T13:57:42Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://ri.ufs.br/handle/riufs/6100
url https://ri.ufs.br/handle/riufs/6100
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.program.fl_str_mv Pós-Graduação em Química
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFS
instname:Universidade Federal de Sergipe (UFS)
instacron:UFS
instname_str Universidade Federal de Sergipe (UFS)
instacron_str UFS
institution UFS
reponame_str Repositório Institucional da UFS
collection Repositório Institucional da UFS
bitstream.url.fl_str_mv https://ri.ufs.br/jspui/bitstream/riufs/6100/2/EDVONALDO_FLORENCIO_SILVA.pdf.txt
https://ri.ufs.br/jspui/bitstream/riufs/6100/3/EDVONALDO_FLORENCIO_SILVA.pdf.jpg
https://ri.ufs.br/jspui/bitstream/riufs/6100/1/EDVONALDO_FLORENCIO_SILVA.pdf
bitstream.checksum.fl_str_mv 299bdf21215ce3319c6d0c7713d7c2ef
9c3ce77faf999e58d129cc3f4f0612c8
eb246a38932dce95eb2a587f26a22888
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UFS - Universidade Federal de Sergipe (UFS)
repository.mail.fl_str_mv repositorio@academico.ufs.br
_version_ 1793351090968723456