Espectroscopia do solo no Vis-IR: potencial predictivo e desenvolvimento de uma interface gráfica de usuário em R

Detalhes bibliográficos
Ano de defesa: 2017
Autor(a) principal: Dotto, André Carnieletto lattes
Orientador(a): Dalmolin, Ricardo Simão Diniz lattes
Banca de defesa: Caten, Alexandre ten lattes, Franco, ândrea Machado Pereira lattes, Araújo, Suzana Romeiro lattes, Vasques, Gustavo de Mattos lattes
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: eng
Instituição de defesa: Universidade Federal de Santa Maria
Centro de Ciências Rurais
Programa de Pós-Graduação: Programa de Pós-Graduação em Ciência do Solo
Departamento: Agronomia
País: Brasil
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: http://repositorio.ufsm.br/handle/1/11343
Resumo: This thesis presents a study of Visible Near-infrared spectroscopy technique applied to predict soil properties. The purpose was to develop quantitative soil information due to the demand of digital soil mapping, environmental monitoring, agricultural production and for increasing spatial information on soil. Soil spectroscopy emerge as an alternative to revolutionize soil monitoring, allowing rapid, low-cost, non-destructive samples sampling, environmental-friendly, reproducible, and repeatable analysis. To improve the efficiency of soil prediction using spectral data, several spectral preprocessing techniques and multivariate models were exploited. A graphical user interface (GUI) in R, named Alrad Spectra, was developed to perform preprocessing, multivariate modeling and prediction using spectral data. Hereby, the objectives were: The objectives were: i) to predict soil properties to improve soil information using spectral data, ii) to compare the performance of spectral preprocessing and multivariate calibration methods in the prediction of soil organic carbon, iii) to obtain reliable soil organic carbon prediction, and iv) to develop a graphical user interface that performs spectral preprocessing and prediction of the soil property using spectroscopic data. A total of 595 soil samples were collected in central region of Santa Catarina State, Brazil. Soil spectral reflectance was obtained using a FieldSpec 3 spectroradiometer with a spectral range of 350–2500 nm with 1 nm of spectral resolution. The outcomes of the thesis have demonstrated the great performance of predicting soil properties using Vis-NIR spectroscopy. Apparently, soil properties that are directly related to the chromophores such as organic carbon presented superior prediction statistics than particle size. Spectral preprocessing applied in the soil spectra contribute to the development of high-level prediction model. Comparing different spectral preprocessing techniques for soil organic carbon (SOC) prediction revealed that the scatter–corrective preprocessing techniques presented superior prediction results compared to spectral derivatives. In scatter–correction technique, continuum removal is the most suitable preprocessing to be used for SOC prediction. In the calibration modeling, excepting for random forest, all of methods presented robust prediction, with emphasis on the support vector machine method. The systematic methodology applied in this study can improve the reliability of SOC estimation by examining how techniques of spectral preprocessing and multivariate methods affect the prediction performance using spectral analysis. The development of easy-to-use graphical user interface may benefit a large number of users, who will take advantage of this useful chemometrics analysis. Alrad Spectra is the first GUI of its kind and the expectation is that this tool can expand the application of the spectroscopy technique.
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spelling 2017-08-10T13:53:38Z2017-08-10T13:53:38Z2017-02-06http://repositorio.ufsm.br/handle/1/11343This thesis presents a study of Visible Near-infrared spectroscopy technique applied to predict soil properties. The purpose was to develop quantitative soil information due to the demand of digital soil mapping, environmental monitoring, agricultural production and for increasing spatial information on soil. Soil spectroscopy emerge as an alternative to revolutionize soil monitoring, allowing rapid, low-cost, non-destructive samples sampling, environmental-friendly, reproducible, and repeatable analysis. To improve the efficiency of soil prediction using spectral data, several spectral preprocessing techniques and multivariate models were exploited. A graphical user interface (GUI) in R, named Alrad Spectra, was developed to perform preprocessing, multivariate modeling and prediction using spectral data. Hereby, the objectives were: The objectives were: i) to predict soil properties to improve soil information using spectral data, ii) to compare the performance of spectral preprocessing and multivariate calibration methods in the prediction of soil organic carbon, iii) to obtain reliable soil organic carbon prediction, and iv) to develop a graphical user interface that performs spectral preprocessing and prediction of the soil property using spectroscopic data. A total of 595 soil samples were collected in central region of Santa Catarina State, Brazil. Soil spectral reflectance was obtained using a FieldSpec 3 spectroradiometer with a spectral range of 350–2500 nm with 1 nm of spectral resolution. The outcomes of the thesis have demonstrated the great performance of predicting soil properties using Vis-NIR spectroscopy. Apparently, soil properties that are directly related to the chromophores such as organic carbon presented superior prediction statistics than particle size. Spectral preprocessing applied in the soil spectra contribute to the development of high-level prediction model. Comparing different spectral preprocessing techniques for soil organic carbon (SOC) prediction revealed that the scatter–corrective preprocessing techniques presented superior prediction results compared to spectral derivatives. In scatter–correction technique, continuum removal is the most suitable preprocessing to be used for SOC prediction. In the calibration modeling, excepting for random forest, all of methods presented robust prediction, with emphasis on the support vector machine method. The systematic methodology applied in this study can improve the reliability of SOC estimation by examining how techniques of spectral preprocessing and multivariate methods affect the prediction performance using spectral analysis. The development of easy-to-use graphical user interface may benefit a large number of users, who will take advantage of this useful chemometrics analysis. Alrad Spectra is the first GUI of its kind and the expectation is that this tool can expand the application of the spectroscopy technique.Esta tese apresenta um estudo da técnica de espectroscopia do visível ao infravermelho próximo aplicado à predição de propriedades do solo. O proposito foi de desenvolver informações quantitativas sobre o solo, devido à demanda do mapeamento digital de solos, monitoramento ambiental, produção agrícola e aumento das informações espaciais do solo. A espectroscopia surge como uma alternativa para revolucionar a monitorização do solo, permitindo uma amostragem rápida, de baixo custo, não destrutiva, ambientalmente amigável, reprodutível e repetitiva. Para melhorar a eficiência da predição do solo usando dados espectrais, várias técnicas de pré-processamento espectral e modelos multivariados foram explorados. Uma interface gráfica de usuário (GUI) no R, denominada Alrad Spectra, foi desenvolvida para realizar pré-processamento, modelagem multivariada e predição usando dados espectrais. Os objetivos foram: i) predizer as propriedades do solo para melhorar a informação do solo usando dados espectrais, ii) comparar os desempenhos dos pré-processamentos espectrais e métodos de calibração multivariada na predição do carbono orgânico do solo, iii) obter predições confiáveis do carbono orgânico do solo, e iv) desenvolver uma interface gráfica de usuário que realize o pré-processamento espectral e a predição do atributo solo usando dados espectroscópicos. Um total de 595 amostras de solo foram coletadas na região central do estado de Santa Catarina, Brasil. A reflectância espectral do solo foi obtida utilizando um espectrorradiômetro FieldSpec 3 com uma alcance espectral de 350-2500 nm com 1 nm de resolução espectral. Os resultados da tese demonstraram o grande desempenho da predição de propriedades do solo usando espectroscopia do vísivel ao infravermelho próximo. As propriedades do solo que estão diretamente relacionadas aos cromóforos, como o carbono orgânico, apresentaram predições superiores comparados com o tamanho de partículas. O pré-processamento espectral aplicado nos espectros do solo contribui para o desenvolvimento de um modelo de predição de alto nível. Comparando diferentes técnicas de pré-processamento espectral para a predição de carbono orgânico revelou que as técnicas de pré-processamento de correção de dispersão apresentaram resultados de predição superiores em comparação com as técnicas de derivação espectrais. Na técnica de correção de dispersão, a remoção do contínuo é o pré-processamento mais adequado a ser usado para a predição de carbono. Na modelagem de calibração, com exceção da floresta aleatória, todos os métodos apresentaram uma elevada predição, sendo destaque o método máquina de vetores de suporte. A metodologia sistemática aplicada neste estudo pode melhorar a confiabilidade da estimativa do carbono orgânico ao examinar como as técnicas de pré-processamento espectral e métodos multivariados afetam a performance da predição usando a análise espectral. O desenvolvimento da GUI de fácil utilização pode beneficiar um grande número de usuários, os quais podem tirar proveito desta análise quimiométrica. Alrad Spectra é a primeira GUI desse tipo e a expectativa é que esta ferramenta possa expandir a aplicação da técnica de espectroscopia.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESengUniversidade Federal de Santa MariaCentro de Ciências RuraisPrograma de Pós-Graduação em Ciência do SoloUFSMBrasilAgronomiaAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessAlrad SpectraTécnica de espectroscopiaEspectros de soloAnálise quimiométricaGUI de fácil utilizaçãoSpectroscopy techniqueSoil spectraChemometrics analysisUser-friendly GUICNPQ::CIENCIAS AGRARIAS::AGRONOMIA::CIENCIA DO SOLOEspectroscopia do solo no Vis-IR: potencial predictivo e desenvolvimento de uma interface gráfica de usuário em RSoil Vis-NIR spectroscopy: predictive potential and the development of a graphical user interface in Rinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisDalmolin, Ricardo Simão Dinizhttp://lattes.cnpq.br/3735884911693854Caten, Alexandre tenhttp://lattes.cnpq.br/4065267714747712Franco, ândrea Machado Pereirahttp://lattes.cnpq.br/8354735635774999Araújo, Suzana Romeirohttp://lattes.cnpq.br/7289473902924417Vasques, Gustavo de Mattoshttp://lattes.cnpq.br/1838153897546051http://lattes.cnpq.br/1495863324270099Dotto, André Carnieletto5001001000056006000845916a-ab9b-4bc9-a3d6-f1d2b58563e3fd87d1a1-707a-43e4-9f82-128caa9bebd4ee2bf0ba-5dd6-4f31-a961-fc7a1618096a07f86a83-d953-4d2b-8673-29603052ac5cedae6440-1b67-4a37-953a-5dd806aa01e280fa8080-a924-4b63-9fac-fca7ca37a8f0reponame:Biblioteca Digital de Teses e Dissertações do UFSMinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSMCC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; 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dc.title.por.fl_str_mv Espectroscopia do solo no Vis-IR: potencial predictivo e desenvolvimento de uma interface gráfica de usuário em R
dc.title.alternative.eng.fl_str_mv Soil Vis-NIR spectroscopy: predictive potential and the development of a graphical user interface in R
title Espectroscopia do solo no Vis-IR: potencial predictivo e desenvolvimento de uma interface gráfica de usuário em R
spellingShingle Espectroscopia do solo no Vis-IR: potencial predictivo e desenvolvimento de uma interface gráfica de usuário em R
Dotto, André Carnieletto
Alrad Spectra
Técnica de espectroscopia
Espectros de solo
Análise quimiométrica
GUI de fácil utilização
Spectroscopy technique
Soil spectra
Chemometrics analysis
User-friendly GUI
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::CIENCIA DO SOLO
title_short Espectroscopia do solo no Vis-IR: potencial predictivo e desenvolvimento de uma interface gráfica de usuário em R
title_full Espectroscopia do solo no Vis-IR: potencial predictivo e desenvolvimento de uma interface gráfica de usuário em R
title_fullStr Espectroscopia do solo no Vis-IR: potencial predictivo e desenvolvimento de uma interface gráfica de usuário em R
title_full_unstemmed Espectroscopia do solo no Vis-IR: potencial predictivo e desenvolvimento de uma interface gráfica de usuário em R
title_sort Espectroscopia do solo no Vis-IR: potencial predictivo e desenvolvimento de uma interface gráfica de usuário em R
author Dotto, André Carnieletto
author_facet Dotto, André Carnieletto
author_role author
dc.contributor.advisor1.fl_str_mv Dalmolin, Ricardo Simão Diniz
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/3735884911693854
dc.contributor.referee1.fl_str_mv Caten, Alexandre ten
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/4065267714747712
dc.contributor.referee2.fl_str_mv Franco, ândrea Machado Pereira
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/8354735635774999
dc.contributor.referee3.fl_str_mv Araújo, Suzana Romeiro
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/7289473902924417
dc.contributor.referee4.fl_str_mv Vasques, Gustavo de Mattos
dc.contributor.referee4Lattes.fl_str_mv http://lattes.cnpq.br/1838153897546051
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/1495863324270099
dc.contributor.author.fl_str_mv Dotto, André Carnieletto
contributor_str_mv Dalmolin, Ricardo Simão Diniz
Caten, Alexandre ten
Franco, ândrea Machado Pereira
Araújo, Suzana Romeiro
Vasques, Gustavo de Mattos
dc.subject.por.fl_str_mv Alrad Spectra
Técnica de espectroscopia
Espectros de solo
Análise quimiométrica
GUI de fácil utilização
topic Alrad Spectra
Técnica de espectroscopia
Espectros de solo
Análise quimiométrica
GUI de fácil utilização
Spectroscopy technique
Soil spectra
Chemometrics analysis
User-friendly GUI
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::CIENCIA DO SOLO
dc.subject.eng.fl_str_mv Spectroscopy technique
Soil spectra
Chemometrics analysis
User-friendly GUI
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::CIENCIA DO SOLO
description This thesis presents a study of Visible Near-infrared spectroscopy technique applied to predict soil properties. The purpose was to develop quantitative soil information due to the demand of digital soil mapping, environmental monitoring, agricultural production and for increasing spatial information on soil. Soil spectroscopy emerge as an alternative to revolutionize soil monitoring, allowing rapid, low-cost, non-destructive samples sampling, environmental-friendly, reproducible, and repeatable analysis. To improve the efficiency of soil prediction using spectral data, several spectral preprocessing techniques and multivariate models were exploited. A graphical user interface (GUI) in R, named Alrad Spectra, was developed to perform preprocessing, multivariate modeling and prediction using spectral data. Hereby, the objectives were: The objectives were: i) to predict soil properties to improve soil information using spectral data, ii) to compare the performance of spectral preprocessing and multivariate calibration methods in the prediction of soil organic carbon, iii) to obtain reliable soil organic carbon prediction, and iv) to develop a graphical user interface that performs spectral preprocessing and prediction of the soil property using spectroscopic data. A total of 595 soil samples were collected in central region of Santa Catarina State, Brazil. Soil spectral reflectance was obtained using a FieldSpec 3 spectroradiometer with a spectral range of 350–2500 nm with 1 nm of spectral resolution. The outcomes of the thesis have demonstrated the great performance of predicting soil properties using Vis-NIR spectroscopy. Apparently, soil properties that are directly related to the chromophores such as organic carbon presented superior prediction statistics than particle size. Spectral preprocessing applied in the soil spectra contribute to the development of high-level prediction model. Comparing different spectral preprocessing techniques for soil organic carbon (SOC) prediction revealed that the scatter–corrective preprocessing techniques presented superior prediction results compared to spectral derivatives. In scatter–correction technique, continuum removal is the most suitable preprocessing to be used for SOC prediction. In the calibration modeling, excepting for random forest, all of methods presented robust prediction, with emphasis on the support vector machine method. The systematic methodology applied in this study can improve the reliability of SOC estimation by examining how techniques of spectral preprocessing and multivariate methods affect the prediction performance using spectral analysis. The development of easy-to-use graphical user interface may benefit a large number of users, who will take advantage of this useful chemometrics analysis. Alrad Spectra is the first GUI of its kind and the expectation is that this tool can expand the application of the spectroscopy technique.
publishDate 2017
dc.date.accessioned.fl_str_mv 2017-08-10T13:53:38Z
dc.date.available.fl_str_mv 2017-08-10T13:53:38Z
dc.date.issued.fl_str_mv 2017-02-06
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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format doctoralThesis
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dc.identifier.uri.fl_str_mv http://repositorio.ufsm.br/handle/1/11343
url http://repositorio.ufsm.br/handle/1/11343
dc.language.iso.fl_str_mv eng
language eng
dc.relation.cnpq.fl_str_mv 500100100005
dc.relation.confidence.fl_str_mv 600
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dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
Centro de Ciências Rurais
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Ciência do Solo
dc.publisher.initials.fl_str_mv UFSM
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Agronomia
publisher.none.fl_str_mv Universidade Federal de Santa Maria
Centro de Ciências Rurais
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações do UFSM
instname:Universidade Federal de Santa Maria (UFSM)
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institution UFSM
reponame_str Biblioteca Digital de Teses e Dissertações do UFSM
collection Biblioteca Digital de Teses e Dissertações do UFSM
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repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações do UFSM - Universidade Federal de Santa Maria (UFSM)
repository.mail.fl_str_mv atendimento.sib@ufsm.br||tedebc@gmail.com
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