Distribuição da frequência de cepas de Mycobacterium tuberculosis multidroga resistentes (MDR) e extensivamente resistentes (XDR) do estado de São Paulo

Detalhes bibliográficos
Ano de defesa: 2020
Autor(a) principal: Matsui, Tania [UNIFESP]
Orientador(a): Não Informado pela instituição
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
dARK ID: ark:/48912/001300001x548
Idioma: por
Instituição de defesa: Universidade Federal de São Paulo (UNIFESP)
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: https://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=9169522
https://hdl.handle.net/11600/64747
Resumo: Tuberculosis is a disease susceptible to drug treatment, but the incorrect and irregular use of anti-tuberculosis drugs and prolonged treatment created selective conditions that promoted the emergence of resistance or multidrug resistance in isolates of Mycobacterium tuberculosis var. tuberculosis, and multidrug-resistant isolates (resistant to 1st-line drugs, isoniazid, rifampicin, pyrazinamide and ethambutol) are considered a worldwide threat. Drug resistance in M. tuberculosis var. tuberculosis usually occurs through spontaneous mutations in genes encoding the target proteins of the drugs or enzymes that activate them, so there is an interest in genotypic methods for detecting these mutations and providing rapid results in relation to traditional phenotypic methods. This study analyzed the mutations associated with resistance to 1st and/or 2nd line drugs by sequencing 156 isolates of M. tuberculosis var. tuberculosis previously characterized phenotypically by the automated system BACTEC MGIT 960 as monoresistant to isoniazid, MDR, pre-XDR and XDR in the period of 2012 to 2017 at the Adolfo Lutz Institute of São Paulo. We found that Rifampicin Resistance-Determining Region (RRDR) of the rpoB gene; codon 315 of the katG gene and the -15 region of the fabG-inhA promoter region; and Quinolone Resistance-Determining Region (QRDR) of the gyrA gene are markers for rifampin resistance; isoniazid; and fluoroquinolones, respectively and the most frequent mutations associated with resistance to these drugs identified in our study were Ser531Leu in the rpoB gene (97.3%; 109/112), Ser315Thr in the katG gene (93.9%; 108/115), Asp94Gly in the gyrA gene (44%; 18/41). A new mutation, Asp449Val, was identified in the gyrB gene and we infer that it is associated with resistance to fluoroquinolone. In relation to resistance to aminoglycosides, other gene targets should be investigated, as the analyzes on the gene target rrs were not enough to associate it with resistance to these drugs in some isolates of our work. Discordant isolates in the phenotypic and genotypic results of the 1st and 2nd line drugs were identified and in two isolates the presence of heteroresistance was observed in the fabG-inhA and gyrA promoter region. The disagreement in the other isolates can be explained by the fact that resistance to the drug is caused by mutations in other genes that were not investigated in this study or by expression of efflux pumps. The evolution of resistance from MDR to pre-XDR and/or XDR was verified in patients who had in their treatment history several re-enrollments after abandonment and/or retreatment after failure and this outcome may promote the selection of sub-populations of mycobacteria during therapy, and impairing treatment success.
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spelling Distribuição da frequência de cepas de Mycobacterium tuberculosis multidroga resistentes (MDR) e extensivamente resistentes (XDR) do estado de São PauloMDR-TBpré-XDR TBXDR-TBgyrAgyrBTuberculosis is a disease susceptible to drug treatment, but the incorrect and irregular use of anti-tuberculosis drugs and prolonged treatment created selective conditions that promoted the emergence of resistance or multidrug resistance in isolates of Mycobacterium tuberculosis var. tuberculosis, and multidrug-resistant isolates (resistant to 1st-line drugs, isoniazid, rifampicin, pyrazinamide and ethambutol) are considered a worldwide threat. Drug resistance in M. tuberculosis var. tuberculosis usually occurs through spontaneous mutations in genes encoding the target proteins of the drugs or enzymes that activate them, so there is an interest in genotypic methods for detecting these mutations and providing rapid results in relation to traditional phenotypic methods. This study analyzed the mutations associated with resistance to 1st and/or 2nd line drugs by sequencing 156 isolates of M. tuberculosis var. tuberculosis previously characterized phenotypically by the automated system BACTEC MGIT 960 as monoresistant to isoniazid, MDR, pre-XDR and XDR in the period of 2012 to 2017 at the Adolfo Lutz Institute of São Paulo. We found that Rifampicin Resistance-Determining Region (RRDR) of the rpoB gene; codon 315 of the katG gene and the -15 region of the fabG-inhA promoter region; and Quinolone Resistance-Determining Region (QRDR) of the gyrA gene are markers for rifampin resistance; isoniazid; and fluoroquinolones, respectively and the most frequent mutations associated with resistance to these drugs identified in our study were Ser531Leu in the rpoB gene (97.3%; 109/112), Ser315Thr in the katG gene (93.9%; 108/115), Asp94Gly in the gyrA gene (44%; 18/41). A new mutation, Asp449Val, was identified in the gyrB gene and we infer that it is associated with resistance to fluoroquinolone. In relation to resistance to aminoglycosides, other gene targets should be investigated, as the analyzes on the gene target rrs were not enough to associate it with resistance to these drugs in some isolates of our work. Discordant isolates in the phenotypic and genotypic results of the 1st and 2nd line drugs were identified and in two isolates the presence of heteroresistance was observed in the fabG-inhA and gyrA promoter region. The disagreement in the other isolates can be explained by the fact that resistance to the drug is caused by mutations in other genes that were not investigated in this study or by expression of efflux pumps. The evolution of resistance from MDR to pre-XDR and/or XDR was verified in patients who had in their treatment history several re-enrollments after abandonment and/or retreatment after failure and this outcome may promote the selection of sub-populations of mycobacteria during therapy, and impairing treatment success.A tuberculose é uma doença susceptível ao tratamento medicamentoso, mas o uso incorreto e irregular dos fármacos anti-tuberculose e regimes prolongados de tratamento criaram condições seletivas que promovem o surgimento da resistência ou da multirresistência em isolados de Mycobacterium tuberculosis var. tuberculosis. Isolados multidroga resistentes (resistentes aos fármacos de 1a linha, isoniazida, rifampicina, pirazinamida e etambutol) são considerados uma ameaça mundial. A resistência aos fármacos em M. tuberculosis var. tuberculosis geralmente ocorre por mutações espontâneas em genes codificadores das proteínas-alvo ou de enzimas que os ativam. Desta forma, existe um interesse nos métodos genotípicos para a detecção destas mutações e que forneçam resultados rápidos em relação aos métodos fenotípicos tradicionais. Este estudo analisou as mutações associadas às resistências aos fármacos de 1ª e/ou 2ª linha após sequenciamento gênico de 156 isolados de M. tuberculosis var. tuberculosis previamente caracterizados fenotipicamente pelo sistema automatizado BACTEC MGIT 960 como monoresistente à isoniazida, MDR, pré-XDR e XDR no período de 2012 a 2017 no Instituo Adolfo Lutz de São Paulo. Constatamos que a Região determinante de resistência à rifampicina (RRDR) do gene rpoB; o códon 315 do gene katG e a região -15 da região promotora fabG-inhA; e Região determinante de resistência à quinolona (QRDR) do gene gyrA são marcadores para resistência à rifampicina; isoniazida; e fluoroquinolonas, respectivamente e as mutações mais frequentes associadas às resistências a estes fármacos identificadas no nosso estudo foram Ser531Leu no gene rpoB (97,3%;109/112), Ser315Thr no gene katG (93,9%; 108/115), Asp94Gly no gene gyrA (44%; 18/41). Uma nova mutação, Asp449Val, foi identificada no gene gyrB e pode estar associada à resistência a fluoroquinolona. Em relação às resistências aos aminoglicosídeos, outros alvos gênicos devem ser pesquisados, pois as análises do alvo gênico rrs não foram suficientes para a associá-lo com as resistências a estes fármacos em alguns isolados do nosso trabalho. Isolados com resultados discordantes entre os testes fenotípico e genotípico de resistência aos fármacos de 1ª e 2ª linha foram identificados, e em dois isolados foram observados a presença de heteroresistência na região promotora fabG-inhA e em gyrA. A discordância nos outros isolados pode ser explicada pelo fato da resistência ao fármaco ser causada por mutações em outros genes que não foram investigados neste estudo ou por expressão de bombas de efluxo. A evolução da resistência de MDR para pré-XDR e/ou XDR foi verificada nos pacientes que apresentaram no seu histórico de tratamento vários reingressos após abandono e/ou retratamento após falência e este desfecho pode promover a seleção de subpopulações de micobactérias durante a terapia, prejudicando o sucesso do tratamento.Dados abertos - Sucupira - Teses e dissertações (2020)Universidade Federal de São Paulo (UNIFESP)Niero, Cristina Viana [UNIFESP]Universidade Federal de São PauloMatsui, Tania [UNIFESP]2022-07-22T13:50:32Z2022-07-22T13:50:32Z2020-05-06info:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/publishedVersion115 p.application/pdfhttps://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=9169522TANIA MATSUI.pdfhttps://hdl.handle.net/11600/64747ark:/48912/001300001x548porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-07-27T03:19:09Zoai:repositorio.unifesp.br:11600/64747Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-07-27T03:19:09Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Distribuição da frequência de cepas de Mycobacterium tuberculosis multidroga resistentes (MDR) e extensivamente resistentes (XDR) do estado de São Paulo
title Distribuição da frequência de cepas de Mycobacterium tuberculosis multidroga resistentes (MDR) e extensivamente resistentes (XDR) do estado de São Paulo
spellingShingle Distribuição da frequência de cepas de Mycobacterium tuberculosis multidroga resistentes (MDR) e extensivamente resistentes (XDR) do estado de São Paulo
Matsui, Tania [UNIFESP]
MDR-TB
pré-XDR TB
XDR-TB
gyrA
gyrB
title_short Distribuição da frequência de cepas de Mycobacterium tuberculosis multidroga resistentes (MDR) e extensivamente resistentes (XDR) do estado de São Paulo
title_full Distribuição da frequência de cepas de Mycobacterium tuberculosis multidroga resistentes (MDR) e extensivamente resistentes (XDR) do estado de São Paulo
title_fullStr Distribuição da frequência de cepas de Mycobacterium tuberculosis multidroga resistentes (MDR) e extensivamente resistentes (XDR) do estado de São Paulo
title_full_unstemmed Distribuição da frequência de cepas de Mycobacterium tuberculosis multidroga resistentes (MDR) e extensivamente resistentes (XDR) do estado de São Paulo
title_sort Distribuição da frequência de cepas de Mycobacterium tuberculosis multidroga resistentes (MDR) e extensivamente resistentes (XDR) do estado de São Paulo
author Matsui, Tania [UNIFESP]
author_facet Matsui, Tania [UNIFESP]
author_role author
dc.contributor.none.fl_str_mv Niero, Cristina Viana [UNIFESP]
Universidade Federal de São Paulo
dc.contributor.author.fl_str_mv Matsui, Tania [UNIFESP]
dc.subject.por.fl_str_mv MDR-TB
pré-XDR TB
XDR-TB
gyrA
gyrB
topic MDR-TB
pré-XDR TB
XDR-TB
gyrA
gyrB
description Tuberculosis is a disease susceptible to drug treatment, but the incorrect and irregular use of anti-tuberculosis drugs and prolonged treatment created selective conditions that promoted the emergence of resistance or multidrug resistance in isolates of Mycobacterium tuberculosis var. tuberculosis, and multidrug-resistant isolates (resistant to 1st-line drugs, isoniazid, rifampicin, pyrazinamide and ethambutol) are considered a worldwide threat. Drug resistance in M. tuberculosis var. tuberculosis usually occurs through spontaneous mutations in genes encoding the target proteins of the drugs or enzymes that activate them, so there is an interest in genotypic methods for detecting these mutations and providing rapid results in relation to traditional phenotypic methods. This study analyzed the mutations associated with resistance to 1st and/or 2nd line drugs by sequencing 156 isolates of M. tuberculosis var. tuberculosis previously characterized phenotypically by the automated system BACTEC MGIT 960 as monoresistant to isoniazid, MDR, pre-XDR and XDR in the period of 2012 to 2017 at the Adolfo Lutz Institute of São Paulo. We found that Rifampicin Resistance-Determining Region (RRDR) of the rpoB gene; codon 315 of the katG gene and the -15 region of the fabG-inhA promoter region; and Quinolone Resistance-Determining Region (QRDR) of the gyrA gene are markers for rifampin resistance; isoniazid; and fluoroquinolones, respectively and the most frequent mutations associated with resistance to these drugs identified in our study were Ser531Leu in the rpoB gene (97.3%; 109/112), Ser315Thr in the katG gene (93.9%; 108/115), Asp94Gly in the gyrA gene (44%; 18/41). A new mutation, Asp449Val, was identified in the gyrB gene and we infer that it is associated with resistance to fluoroquinolone. In relation to resistance to aminoglycosides, other gene targets should be investigated, as the analyzes on the gene target rrs were not enough to associate it with resistance to these drugs in some isolates of our work. Discordant isolates in the phenotypic and genotypic results of the 1st and 2nd line drugs were identified and in two isolates the presence of heteroresistance was observed in the fabG-inhA and gyrA promoter region. The disagreement in the other isolates can be explained by the fact that resistance to the drug is caused by mutations in other genes that were not investigated in this study or by expression of efflux pumps. The evolution of resistance from MDR to pre-XDR and/or XDR was verified in patients who had in their treatment history several re-enrollments after abandonment and/or retreatment after failure and this outcome may promote the selection of sub-populations of mycobacteria during therapy, and impairing treatment success.
publishDate 2020
dc.date.none.fl_str_mv 2020-05-06
2022-07-22T13:50:32Z
2022-07-22T13:50:32Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=9169522
TANIA MATSUI.pdf
https://hdl.handle.net/11600/64747
dc.identifier.dark.fl_str_mv ark:/48912/001300001x548
url https://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=9169522
https://hdl.handle.net/11600/64747
identifier_str_mv TANIA MATSUI.pdf
ark:/48912/001300001x548
dc.language.iso.fl_str_mv por
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dc.format.none.fl_str_mv 115 p.
application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de São Paulo (UNIFESP)
publisher.none.fl_str_mv Universidade Federal de São Paulo (UNIFESP)
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
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