Determinação da estrutura tridimensional de um inibidor de serinoproteases do tipo Kazal do mosquito aedes aegypti, vetor da dengue

Detalhes bibliográficos
Ano de defesa: 2018
Autor(a) principal: Torquato, Ricardo Jose Soares [UNIFESP]
Orientador(a): Não Informado pela instituição
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
dARK ID: ark:/48912/001300002j9cd
Idioma: por
Instituição de defesa: Universidade Federal de São Paulo (UNIFESP)
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: https://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=6330532
https://repositorio.unifesp.br/handle/11600/53034
Resumo: The mosquito Ae. aegypti is the main vector of arboviruses for humans in Brazil and it is responsible for outbreaks of dengue, chikungunya, yellow fever, and recently it has been involved in the high number of humans infected with zika virus. The hematophageal activity of Ae. aegypti allowed it to develop several strategies to control the hemostasis of vertebrate host’s. In 2010, our group expressed and characterized a serinepeptidase inhibitor belonging to Kazal family called rAaTI (Aedes aegypti Trypsin Inhibitor). The purified rAaTI was able to inhibit trypsin and affect coagulation time. With this data, the present work had as general objective the determination of three-dimensional structure of AaTI to understand its role in prolonging coagulation time. The rAaTI was purified in amount and an inhibitor preparation containing 20 mg/mL presenting high degree of homogeneity was used in crystallization experiments. The rAaTI crystallized in 100 mM sodium acetate, pH 5.5 containing 25% PEG 3350, 5% PEG 400 and 3% dioxane. Some crystals of rAaTI were dipped in sodium iodide solution with different concentrations (soaking) for 10 s to 1 min, and then they were analyzed (diffracted) on the MX2 line at the National Synchrotron Light Laboratory (LNLS), Campinas. The three-dimensional structure of rAaTI was determined at high resolution of 1.4 Å. The unit cell of the crystal had an unusual low solvent content of approximately 22-23% (Torquato et al., 2017), accommodating two molecules of rAaTI. rAaTI has previously been described as inhibitor of serine protease, bovine trypsin (Ki = 0.15 nM) and human plasmin (Ki = 3.8 nM), and with anticoagulant activity, prolongating the coagulation time, including time of thrombin (TT) (Watanabe et al., 2010). In an attempt to clarify where rAaTI binds to the surface of thrombin, some experiments were performed using surface plasmon resonance (SPR) technology. Thrombin was immobilized on the surface of the CM5TM GE sensorchip. Different concentrations of rAaTI were applied to the surface containing immobilized thrombin and it was obtained a dissociation constant (KD) of 3.68 μM. Watanabe et al. showed a value of KD = 320 nM (Watanabe et al., 2011). The dissociation constant calculated by SPR is approximately ten times higher, which can be explained by partial blocking of thrombin exosites I and II during the enzyme immobilization procedure. The SPR experiments showed inhibition of the binding of rAaTI to thrombin in the presence of heparin, reinforcing the suggestion that AaTI can interacted to exosite II of thrombin.
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spelling Determinação da estrutura tridimensional de um inibidor de serinoproteases do tipo Kazal do mosquito aedes aegypti, vetor da dengueDetermination of the three-dimensional structure of a Kazal type serine protease inhibitor from the Aedes aegypti mosquito, vector of dengueAedes AegyptiSerine protease inhibitorsStructural biologySurface plasmon resonanceKazal type familyAedes Aegypti Inibidores de serinoproteasesBiologia EstruturalRessonância plasmônica de superfícieFamília tipo KazalThe mosquito Ae. aegypti is the main vector of arboviruses for humans in Brazil and it is responsible for outbreaks of dengue, chikungunya, yellow fever, and recently it has been involved in the high number of humans infected with zika virus. The hematophageal activity of Ae. aegypti allowed it to develop several strategies to control the hemostasis of vertebrate host’s. In 2010, our group expressed and characterized a serinepeptidase inhibitor belonging to Kazal family called rAaTI (Aedes aegypti Trypsin Inhibitor). The purified rAaTI was able to inhibit trypsin and affect coagulation time. With this data, the present work had as general objective the determination of three-dimensional structure of AaTI to understand its role in prolonging coagulation time. The rAaTI was purified in amount and an inhibitor preparation containing 20 mg/mL presenting high degree of homogeneity was used in crystallization experiments. The rAaTI crystallized in 100 mM sodium acetate, pH 5.5 containing 25% PEG 3350, 5% PEG 400 and 3% dioxane. Some crystals of rAaTI were dipped in sodium iodide solution with different concentrations (soaking) for 10 s to 1 min, and then they were analyzed (diffracted) on the MX2 line at the National Synchrotron Light Laboratory (LNLS), Campinas. The three-dimensional structure of rAaTI was determined at high resolution of 1.4 Å. The unit cell of the crystal had an unusual low solvent content of approximately 22-23% (Torquato et al., 2017), accommodating two molecules of rAaTI. rAaTI has previously been described as inhibitor of serine protease, bovine trypsin (Ki = 0.15 nM) and human plasmin (Ki = 3.8 nM), and with anticoagulant activity, prolongating the coagulation time, including time of thrombin (TT) (Watanabe et al., 2010). In an attempt to clarify where rAaTI binds to the surface of thrombin, some experiments were performed using surface plasmon resonance (SPR) technology. Thrombin was immobilized on the surface of the CM5TM GE sensorchip. Different concentrations of rAaTI were applied to the surface containing immobilized thrombin and it was obtained a dissociation constant (KD) of 3.68 μM. Watanabe et al. showed a value of KD = 320 nM (Watanabe et al., 2011). The dissociation constant calculated by SPR is approximately ten times higher, which can be explained by partial blocking of thrombin exosites I and II during the enzyme immobilization procedure. The SPR experiments showed inhibition of the binding of rAaTI to thrombin in the presence of heparin, reinforcing the suggestion that AaTI can interacted to exosite II of thrombin.O mosquito Ae. aegypti é o principal vetor de arboviroses para humanos, no Brasil e o responsável por surtos de dengue, chikungunya, febre amarela, e recentemente esteve envolvido no elevado numero de infectados com vírus zika. O hábito hematofágico do Ae. aegypti permitiu que desenvolve-se inúmeras estratégias de controle da hemostasia do seu hospedeiro vertebrado. Em 2010, o nosso grupo expressou e caracterizou um inibidor de serinopeptidase da família Kazal denominado de rAaTI (Aedes aegypti Trypsin Inhibitor). O rAaTI purificado foi capaz de inibir tripsina e afetar o tempo de coagulação. De posse destes dados, o presente trabalho teve como objetivo geral determinar a estrutura tridimensional do rAaTI para entender o seu papel no prolongamento do tempo de coagulação. O rAaTI foi purificado em quantidade e uma preparação contendo 20 mg/mL do inibidor com alto grau de homogeneidade foi utilizado em experimentos de cristalização. O rAaTI cristalizou em 100 mM acetato de sódio, pH 5,5 contendo 25% PEG 3350; 5% PEG 400 and 3% dioxana. Alguns cristais do inibidor foram mergulhados em soluções de iodeto de sódio com diferentes concetrações (soaking), por 10 s a 1 min, em seguida os mesmos foram analisados (difratados) na linha MX2 no laboratório Nacional de Luz Syncrotron (LNLS), Campinas. A estrutura tri-dimensional do rAaTI foi determinada em alta resolução de 1.4 Å. A célula unitária do cristal apresentou um volume de solvente incomum baixo de aproximadamente 22-23% (Torquato et al., 2017), acomodando duas moléculas do rAaTI. O rAaTI foi anteriormente descrito como inibidor de serinoprotease, tripsina bovina ( Ki = 0,15 nM) e plasmina humana (Ki = 3,8 nM ), e com atividade anticoagulante, promovendo o prolongamento do tempo de coagulação, incluindo o teste de tempo de trombina (TT) (Watanabe et al., 2010). Na tentativa de esclarecer onde o rAaTI se liga na superfície da trombina, alguns experimentos foram realizados usando a tecnologia “ SPR “ (do inglês – surface plasmon resonance). A trombina foi imobilizada sobre a superfície do sensor-chip CM5TM GE. Diferentes concentrações de rAaTI foram aplicadas a superfície com a trombina imobilizada e uma constante de dissociação (KD) de 3,68 μM foi obtida. Watanabe e colaboradores mostraram um valor de KD = 320 nM (Watanabe et al., 2011). A constante de dissociação calculada por SPR é aproximadamente dez vezes maior, que pode ser explicado pelo bloqueado parcial dos exosítios I e II da trombina durante o procedimento de imobilização da enzima. Os experimentos de SPR mostraram inibição da ligação de rAaTI a trombina na presença da heparina, reforçando a sugestão de que o AaTI pode se ligar ao exosítio II da trombina.Dados abertos - Sucupira - Teses e dissertações (2018)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Instituto Nacional de Ciência e Tecnologia – Entomologia Molecular (INCT - EM)Universidade Federal de São Paulo (UNIFESP)Tanaka, Aparecida Sadae [UNIFESP]Pereira, Pedro José Barbosahttp://lattes.cnpq.br/1884820479531031http://lattes.cnpq.br/1168789309568199http://lattes.cnpq.br/3995278540776284Universidade Federal de São Paulo (UNIFESP)Torquato, Ricardo Jose Soares [UNIFESP]2020-03-25T12:10:52Z2020-03-25T12:10:52Z2018-06-28info:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/publishedVersion88 f.application/pdfhttps://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=63305322018-0979.pdfhttps://repositorio.unifesp.br/handle/11600/53034ark:/48912/001300002j9cdporSão Pauloinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-02T20:16:37Zoai:repositorio.unifesp.br:11600/53034Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-08-02T20:16:37Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Determinação da estrutura tridimensional de um inibidor de serinoproteases do tipo Kazal do mosquito aedes aegypti, vetor da dengue
Determination of the three-dimensional structure of a Kazal type serine protease inhibitor from the Aedes aegypti mosquito, vector of dengue
title Determinação da estrutura tridimensional de um inibidor de serinoproteases do tipo Kazal do mosquito aedes aegypti, vetor da dengue
spellingShingle Determinação da estrutura tridimensional de um inibidor de serinoproteases do tipo Kazal do mosquito aedes aegypti, vetor da dengue
Torquato, Ricardo Jose Soares [UNIFESP]
Aedes Aegypti
Serine protease inhibitors
Structural biology
Surface plasmon resonance
Kazal type family
Aedes Aegypti Inibidores de serinoproteases
Biologia Estrutural
Ressonância plasmônica de superfície
Família tipo Kazal
title_short Determinação da estrutura tridimensional de um inibidor de serinoproteases do tipo Kazal do mosquito aedes aegypti, vetor da dengue
title_full Determinação da estrutura tridimensional de um inibidor de serinoproteases do tipo Kazal do mosquito aedes aegypti, vetor da dengue
title_fullStr Determinação da estrutura tridimensional de um inibidor de serinoproteases do tipo Kazal do mosquito aedes aegypti, vetor da dengue
title_full_unstemmed Determinação da estrutura tridimensional de um inibidor de serinoproteases do tipo Kazal do mosquito aedes aegypti, vetor da dengue
title_sort Determinação da estrutura tridimensional de um inibidor de serinoproteases do tipo Kazal do mosquito aedes aegypti, vetor da dengue
author Torquato, Ricardo Jose Soares [UNIFESP]
author_facet Torquato, Ricardo Jose Soares [UNIFESP]
author_role author
dc.contributor.none.fl_str_mv Tanaka, Aparecida Sadae [UNIFESP]
Pereira, Pedro José Barbosa
http://lattes.cnpq.br/1884820479531031
http://lattes.cnpq.br/1168789309568199
http://lattes.cnpq.br/3995278540776284
Universidade Federal de São Paulo (UNIFESP)
dc.contributor.author.fl_str_mv Torquato, Ricardo Jose Soares [UNIFESP]
dc.subject.por.fl_str_mv Aedes Aegypti
Serine protease inhibitors
Structural biology
Surface plasmon resonance
Kazal type family
Aedes Aegypti Inibidores de serinoproteases
Biologia Estrutural
Ressonância plasmônica de superfície
Família tipo Kazal
topic Aedes Aegypti
Serine protease inhibitors
Structural biology
Surface plasmon resonance
Kazal type family
Aedes Aegypti Inibidores de serinoproteases
Biologia Estrutural
Ressonância plasmônica de superfície
Família tipo Kazal
description The mosquito Ae. aegypti is the main vector of arboviruses for humans in Brazil and it is responsible for outbreaks of dengue, chikungunya, yellow fever, and recently it has been involved in the high number of humans infected with zika virus. The hematophageal activity of Ae. aegypti allowed it to develop several strategies to control the hemostasis of vertebrate host’s. In 2010, our group expressed and characterized a serinepeptidase inhibitor belonging to Kazal family called rAaTI (Aedes aegypti Trypsin Inhibitor). The purified rAaTI was able to inhibit trypsin and affect coagulation time. With this data, the present work had as general objective the determination of three-dimensional structure of AaTI to understand its role in prolonging coagulation time. The rAaTI was purified in amount and an inhibitor preparation containing 20 mg/mL presenting high degree of homogeneity was used in crystallization experiments. The rAaTI crystallized in 100 mM sodium acetate, pH 5.5 containing 25% PEG 3350, 5% PEG 400 and 3% dioxane. Some crystals of rAaTI were dipped in sodium iodide solution with different concentrations (soaking) for 10 s to 1 min, and then they were analyzed (diffracted) on the MX2 line at the National Synchrotron Light Laboratory (LNLS), Campinas. The three-dimensional structure of rAaTI was determined at high resolution of 1.4 Å. The unit cell of the crystal had an unusual low solvent content of approximately 22-23% (Torquato et al., 2017), accommodating two molecules of rAaTI. rAaTI has previously been described as inhibitor of serine protease, bovine trypsin (Ki = 0.15 nM) and human plasmin (Ki = 3.8 nM), and with anticoagulant activity, prolongating the coagulation time, including time of thrombin (TT) (Watanabe et al., 2010). In an attempt to clarify where rAaTI binds to the surface of thrombin, some experiments were performed using surface plasmon resonance (SPR) technology. Thrombin was immobilized on the surface of the CM5TM GE sensorchip. Different concentrations of rAaTI were applied to the surface containing immobilized thrombin and it was obtained a dissociation constant (KD) of 3.68 μM. Watanabe et al. showed a value of KD = 320 nM (Watanabe et al., 2011). The dissociation constant calculated by SPR is approximately ten times higher, which can be explained by partial blocking of thrombin exosites I and II during the enzyme immobilization procedure. The SPR experiments showed inhibition of the binding of rAaTI to thrombin in the presence of heparin, reinforcing the suggestion that AaTI can interacted to exosite II of thrombin.
publishDate 2018
dc.date.none.fl_str_mv 2018-06-28
2020-03-25T12:10:52Z
2020-03-25T12:10:52Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=6330532
2018-0979.pdf
https://repositorio.unifesp.br/handle/11600/53034
dc.identifier.dark.fl_str_mv ark:/48912/001300002j9cd
url https://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=6330532
https://repositorio.unifesp.br/handle/11600/53034
identifier_str_mv 2018-0979.pdf
ark:/48912/001300002j9cd
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dc.format.none.fl_str_mv 88 f.
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dc.coverage.none.fl_str_mv São Paulo
dc.publisher.none.fl_str_mv Universidade Federal de São Paulo (UNIFESP)
publisher.none.fl_str_mv Universidade Federal de São Paulo (UNIFESP)
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
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