Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis

Detalhes bibliográficos
Ano de defesa: 2015
Autor(a) principal: Santos, Lucas Fernando dos
Orientador(a): Não Informado pela instituição
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: eng
Instituição de defesa: Universidade Federal de Viçosa
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: http://www.locus.ufv.br/handle/123456789/7164
Resumo: The two most prevalent Mycoplasmas species present in the swine industry are Mycoplasma hyopneumoniae and Mycoplasma hyorhinis. These pathogens can cause significant economic losses for producers and for the industry. Genetic variability has been observed in M. hyopneumoniae using different techniques and heterogeneity of M. hyorhinis has been the focus of a limited number of studies in the past years. The fact that Mycoplasma genomes contain numerous repetitive regions (VNTR) within their DNA and that they are known to be active sites for genetic recombination has prompted the hypothesis that Multiple locus variable number tandem repeat analysis (MLVA) would be an appropriate technique to investigate genetic variation in Mycoplasma. Therefore, the main goal of this dissertation was to investigate the non random distribution of genotypes from different geographical location using multiple locus variable tandem repeat analysis (MLVA) to type M. hyopneumoniae and M. hyorhinis and advance the knowledge on the genetic diversity and the epidemiology of these pathogens.When the M. hyopneumoniae study was taken in account, a high number of M. hyopneumoniae MLVA types appear to circulate among swine herds with a non-random distribution of the MLVA types among regions, also a common type was not identified among samples obtained from all regions in this study. Likewise, heterogeneity of M. hyorhinis was observed, with limited variation in one of the target VNTR in the M. hyorhinis study. A relevant point observed in this study was that different MLVA types were identified in the same animal in different sample types, which suggests that the pig was colonized with different strains. With a focus on Brazil pig industry, one of the most important in the world, a specific study observed a high heterogeneity of M. hyopneumoniae strains circulating in the country, and the comparison between the number of tandem repeats (TR) in RR1 P97 and RR3 P146 showed a significant negative correlation that may suggest a possible compensatory mechanism that would allow the bacterium to keep its full adhesion capacity even after reduction of TR in RR1-P97. In conclusion, the identification of the genetic heterogeneity of M. hyopneumoniae and M. hyorhinis will assist local epidemiological or outbreak investigations, design future control strategies as well as serve as a potential tool to study the evolutionary biology of this species.
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spelling Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinisMycoplasma hyopneumoniaeMycoplasma hyorhinisVariação (Genética)Suíno - DoençasEpidemiologia veterináriaDoenças Infecciosas de AnimaisThe two most prevalent Mycoplasmas species present in the swine industry are Mycoplasma hyopneumoniae and Mycoplasma hyorhinis. These pathogens can cause significant economic losses for producers and for the industry. Genetic variability has been observed in M. hyopneumoniae using different techniques and heterogeneity of M. hyorhinis has been the focus of a limited number of studies in the past years. The fact that Mycoplasma genomes contain numerous repetitive regions (VNTR) within their DNA and that they are known to be active sites for genetic recombination has prompted the hypothesis that Multiple locus variable number tandem repeat analysis (MLVA) would be an appropriate technique to investigate genetic variation in Mycoplasma. Therefore, the main goal of this dissertation was to investigate the non random distribution of genotypes from different geographical location using multiple locus variable tandem repeat analysis (MLVA) to type M. hyopneumoniae and M. hyorhinis and advance the knowledge on the genetic diversity and the epidemiology of these pathogens.When the M. hyopneumoniae study was taken in account, a high number of M. hyopneumoniae MLVA types appear to circulate among swine herds with a non-random distribution of the MLVA types among regions, also a common type was not identified among samples obtained from all regions in this study. Likewise, heterogeneity of M. hyorhinis was observed, with limited variation in one of the target VNTR in the M. hyorhinis study. A relevant point observed in this study was that different MLVA types were identified in the same animal in different sample types, which suggests that the pig was colonized with different strains. With a focus on Brazil pig industry, one of the most important in the world, a specific study observed a high heterogeneity of M. hyopneumoniae strains circulating in the country, and the comparison between the number of tandem repeats (TR) in RR1 P97 and RR3 P146 showed a significant negative correlation that may suggest a possible compensatory mechanism that would allow the bacterium to keep its full adhesion capacity even after reduction of TR in RR1-P97. In conclusion, the identification of the genetic heterogeneity of M. hyopneumoniae and M. hyorhinis will assist local epidemiological or outbreak investigations, design future control strategies as well as serve as a potential tool to study the evolutionary biology of this species.As duas espécies de Mycoplasma mais prevalentes na indústria suinícola são Mycoplasma hyopneumoniae e Mycoplasma hyorhinis. Estes patógenos podem causar perdas econômicas significativas para os produtores e para a indústria. Variabilidade genética tem sido observada em cepas de M. hyopneumoniae usando diferentes técnicas de tipificação. Já a diversidade genética de M. hyorhinis tem sido o foco de um número limitado de estudos nos últimos anos. Mycoplasma apresentam numerosas regiões repetitivas (VNTR) no seu genoma, e essas regiões repetitivas são conhecidos por serem sítios ativos para recombinação genética. Isso trouxe em evidencia a hipótese de que a análise em multilocus de repetições em Tandem de número variável (MLVA) seria uma técnica adequada para investigar a variação genética em Mycoplasma. Portanto, o objetivo principal desta dissertação foi investigar a distribuição não aleatória dos genótipos de diferentes localizações geográfica usando análise em multilocus de repetições em Tandem de número variável (MLVA) para tipificar M. hyopneumoniae e M. hyorhinis avançando o conhecimento sobre a diversidade genética e epidemiologia desses agentes. Quando o foco foi o estudo da diversidade genética de M. hyopneumoniae, um elevado número de tipos de MLVA parecem circular entre rebanhos de suínos com uma distribuição não aleatória dos tipos de MLVA entre regiões. Um único tipo comum não foi identificado entre as amostras obtidas a partir de todas as regiões em estudo. Do mesmo modo, foi observada a diversidade genética de M. hyorhinis, com uma variação limitada em um dos VNTRs alvo. Um ponto relevante observado neste estudo foi a identificação de diferentes tipos de MLVA no mesmo animal em diferentes tipos de amostras, o que sugere que o animal foi colonizado por diferentes cepas. Com foco na indústria de suínos do Brasil, uma das mais importantes do mundo, um estudo específico observou uma elevada diversidade de cepas de M. hyopneumoniae em circulação no país. A comparação entre o número de repetições em tandem (TR) no P97 RR1 e RR3 P146 mostrou uma correlação negativa significativa o que pode sugerir um possível mecanismo compensatório que permitiria a bactéria manter sua capacidade de aderência completa mesmo após a redução da TR em RR1-P97. Em conclusão, a identificação da heterogeneidade genética de M. hyopneumoniae e M. hyorhinis ajudará investigações epidemiológicas ou de surtos locais e ajudará conceber estratégias de controle futuras, bem como servir como uma ferramenta potencial para o estudo da biologia evolutiva da espécie.Fundação de Amparo a Pesquisa do Estado de Minas GeraisCoordenação de Aperfeiçoamento de Pessoal de Nível SuperioUniversidade Federal de ViçosaMoreira, Maria Aparecida Scatamburlohttp://lattes.cnpq.br/8306964619127992Pieters, Maria G.Sreevatsan, SrinandSantos, Lucas Fernando dos2015-12-18T09:46:49Z2015-12-18T09:46:49Z2015-08-14info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfSANTOS, Lucas Fernando dos. Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis. 2015. 98f. Tese (Doutorado em Medicina Veterinária) - Universidade Federal de Viçosa, Viçosa. 2015.http://www.locus.ufv.br/handle/123456789/7164enginfo:eu-repo/semantics/openAccessreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFV2016-04-12T02:17:51Zoai:locus.ufv.br:123456789/7164Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452016-04-12T02:17:51LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false
dc.title.none.fl_str_mv Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis
title Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis
spellingShingle Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis
Santos, Lucas Fernando dos
Mycoplasma hyopneumoniae
Mycoplasma hyorhinis
Variação (Genética)
Suíno - Doenças
Epidemiologia veterinária
Doenças Infecciosas de Animais
title_short Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis
title_full Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis
title_fullStr Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis
title_full_unstemmed Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis
title_sort Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis
author Santos, Lucas Fernando dos
author_facet Santos, Lucas Fernando dos
author_role author
dc.contributor.none.fl_str_mv Moreira, Maria Aparecida Scatamburlo
http://lattes.cnpq.br/8306964619127992
Pieters, Maria G.
Sreevatsan, Srinand
dc.contributor.author.fl_str_mv Santos, Lucas Fernando dos
dc.subject.por.fl_str_mv Mycoplasma hyopneumoniae
Mycoplasma hyorhinis
Variação (Genética)
Suíno - Doenças
Epidemiologia veterinária
Doenças Infecciosas de Animais
topic Mycoplasma hyopneumoniae
Mycoplasma hyorhinis
Variação (Genética)
Suíno - Doenças
Epidemiologia veterinária
Doenças Infecciosas de Animais
description The two most prevalent Mycoplasmas species present in the swine industry are Mycoplasma hyopneumoniae and Mycoplasma hyorhinis. These pathogens can cause significant economic losses for producers and for the industry. Genetic variability has been observed in M. hyopneumoniae using different techniques and heterogeneity of M. hyorhinis has been the focus of a limited number of studies in the past years. The fact that Mycoplasma genomes contain numerous repetitive regions (VNTR) within their DNA and that they are known to be active sites for genetic recombination has prompted the hypothesis that Multiple locus variable number tandem repeat analysis (MLVA) would be an appropriate technique to investigate genetic variation in Mycoplasma. Therefore, the main goal of this dissertation was to investigate the non random distribution of genotypes from different geographical location using multiple locus variable tandem repeat analysis (MLVA) to type M. hyopneumoniae and M. hyorhinis and advance the knowledge on the genetic diversity and the epidemiology of these pathogens.When the M. hyopneumoniae study was taken in account, a high number of M. hyopneumoniae MLVA types appear to circulate among swine herds with a non-random distribution of the MLVA types among regions, also a common type was not identified among samples obtained from all regions in this study. Likewise, heterogeneity of M. hyorhinis was observed, with limited variation in one of the target VNTR in the M. hyorhinis study. A relevant point observed in this study was that different MLVA types were identified in the same animal in different sample types, which suggests that the pig was colonized with different strains. With a focus on Brazil pig industry, one of the most important in the world, a specific study observed a high heterogeneity of M. hyopneumoniae strains circulating in the country, and the comparison between the number of tandem repeats (TR) in RR1 P97 and RR3 P146 showed a significant negative correlation that may suggest a possible compensatory mechanism that would allow the bacterium to keep its full adhesion capacity even after reduction of TR in RR1-P97. In conclusion, the identification of the genetic heterogeneity of M. hyopneumoniae and M. hyorhinis will assist local epidemiological or outbreak investigations, design future control strategies as well as serve as a potential tool to study the evolutionary biology of this species.
publishDate 2015
dc.date.none.fl_str_mv 2015-12-18T09:46:49Z
2015-12-18T09:46:49Z
2015-08-14
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv SANTOS, Lucas Fernando dos. Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis. 2015. 98f. Tese (Doutorado em Medicina Veterinária) - Universidade Federal de Viçosa, Viçosa. 2015.
http://www.locus.ufv.br/handle/123456789/7164
identifier_str_mv SANTOS, Lucas Fernando dos. Investigation of genetic diversity in Mycoplasma hyopneumoniae and Mycoplasma hyorhinis. 2015. 98f. Tese (Doutorado em Medicina Veterinária) - Universidade Federal de Viçosa, Viçosa. 2015.
url http://www.locus.ufv.br/handle/123456789/7164
dc.language.iso.fl_str_mv eng
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dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Viçosa
publisher.none.fl_str_mv Universidade Federal de Viçosa
dc.source.none.fl_str_mv reponame:LOCUS Repositório Institucional da UFV
instname:Universidade Federal de Viçosa (UFV)
instacron:UFV
instname_str Universidade Federal de Viçosa (UFV)
instacron_str UFV
institution UFV
reponame_str LOCUS Repositório Institucional da UFV
collection LOCUS Repositório Institucional da UFV
repository.name.fl_str_mv LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)
repository.mail.fl_str_mv fabiojreis@ufv.br
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