Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino

Detalhes bibliográficos
Ano de defesa: 2022
Autor(a) principal: Silva, Fláive Loyze Baldassarini lattes
Orientador(a): Ribas, Alessandra Ferreira lattes
Banca de defesa: Santos, Tiago Benedito dos lattes, Barbosa, Alexandrius de Moraes lattes, Magalhães, Hélida Mara lattes, Silva, Daniel Fernandes da lattes
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade do Oeste Paulista
Programa de Pós-Graduação: Doutorado em Agronomia
Departamento: Doutorado em Agronomia
País: Brasil
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: http://bdtd.unoeste.br:8080/jspui/handle/jspui/1459
Resumo: Forage grasses, including those of the genus Urochloa sp., are of great importance for the meat and milk production chains in Brazil, however, there are still few studies aimed at improving drought tolerance, considering that with the predicted climate changes, there is a demand for resistant crops to that stress. Transgenic plants with the P5CS gene of Vigna aconitifolia under the control of the AIPC stress-induced promoter would be a suitable alternative, considering that proline plays an extremely important role in mitigating water deficit. Chapter 1 of this thesis aimed to evaluate U. brizantha plants transformed the AIPC:P5CS construct for biochemistry, physiology and molecular characterization in response to water deficit conditions. For this, the plants (control and transformed) were conducted for approximately 30 days with daily drip irrigation, close to their field capacity, and after the water deficit was imposed by water suspension until the plants reached water potential values of -3.0 to -3.5 MPa, where the content of proline, MDA, chlorophyll, leaf gas exchange, biomass and transcriptional profile of the native gene UbP5CS and the transgene VaP5CS were analyzed. The analysis of three brachiaria events transformed with the AIPC:P5CS construct revealed that the E3 event presented physiological, biochemical and molecular differences compared to the other events and the control. In addition, this event exhibited a phenotypic difference from the others. Even with these differences, there was no evidence of greater tolerance to the water deficit of the events in relation to the untransformed control. Chapter 2 refers to the selection of reference genes for salt stress in U. brizantha. Salinity is one of the most important abiotic stresses that affect plant productivity. Quantitative gene expression using real-time PCR (RT-qPCR) is a powerful tool for measuring transcriptional changes that occur in plant tissues under stress. For valid RT-qPCR analysis, normalization against the appropriate reference genes is essential for data accuracy. Despite the importance of signal grass (syn. Urochloa) as a tropical forage, there are no studies on the stability of reference genes under saline stress in this species. This study aimed to evaluate the stability of seven candidate reference genes: Actin 12; eukaryotic initiation factor 4A; elongation factor 1- α; α-5 tubulin; β-6 tubulin; ubiquitin-conjugating enzyme and glucose-6-phosphate dehydrogenase for quantitative real-time PCR assays in Urochola brizantha under saline stress. Total RNA was extracted from leaves and roots of plants grown in a hydroponic system containing 200 mM NaCl for 0, 6, 12 and 24 hrs for RT-qPCR analysis. We used the RefFinder web tool to establish a comprehensive ranking for gene stability. We identified that eIF4a, α-Tub5 and Ubico were the most suitable reference genes for leaf samples, while eIF4a, Act12 and Ubico were the most stable genes in roots. The most and least stable genes were then used to normalize the relative expression of a Na+/H+ (NHX) transporter gene. The relative quantification of this gene varied according to the internal controls (more stable genes, less stable genes), confirming the choice of reference genes.
id UOES_939a99e9aaa9e1a2eade3827596f20a9
oai_identifier_str oai:bdtd.unoeste.br:jspui/1459
network_acronym_str UOES
network_name_str Biblioteca Digital de Teses e Dissertações da UNOESTE
repository_id_str
spelling Ribas, Alessandra Ferreirahttp://lattes.cnpq.br/9273720281917978Santos, Tiago Benedito doshttp://lattes.cnpq.br/5260887075219224Barbosa, Alexandrius de Moraeshttp://lattes.cnpq.br/5812788963409642Magalhães, Hélida Marahttp://lattes.cnpq.br/3059331457723172Silva, Daniel Fernandes dahttp://lattes.cnpq.br/6562731599312560http://lattes.cnpq.br/4598602324231832Silva, Fláive Loyze Baldassarini2023-01-11T13:34:41Z2022-10-31Silva, Fláive Loyze Baldassarini. Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino. 2022. 109 f. Tese (Doutorado em Agronomia) - Universidade do Oeste Paulista, Presidente Prudente, 2022.http://bdtd.unoeste.br:8080/jspui/handle/jspui/1459Forage grasses, including those of the genus Urochloa sp., are of great importance for the meat and milk production chains in Brazil, however, there are still few studies aimed at improving drought tolerance, considering that with the predicted climate changes, there is a demand for resistant crops to that stress. Transgenic plants with the P5CS gene of Vigna aconitifolia under the control of the AIPC stress-induced promoter would be a suitable alternative, considering that proline plays an extremely important role in mitigating water deficit. Chapter 1 of this thesis aimed to evaluate U. brizantha plants transformed the AIPC:P5CS construct for biochemistry, physiology and molecular characterization in response to water deficit conditions. For this, the plants (control and transformed) were conducted for approximately 30 days with daily drip irrigation, close to their field capacity, and after the water deficit was imposed by water suspension until the plants reached water potential values of -3.0 to -3.5 MPa, where the content of proline, MDA, chlorophyll, leaf gas exchange, biomass and transcriptional profile of the native gene UbP5CS and the transgene VaP5CS were analyzed. The analysis of three brachiaria events transformed with the AIPC:P5CS construct revealed that the E3 event presented physiological, biochemical and molecular differences compared to the other events and the control. In addition, this event exhibited a phenotypic difference from the others. Even with these differences, there was no evidence of greater tolerance to the water deficit of the events in relation to the untransformed control. Chapter 2 refers to the selection of reference genes for salt stress in U. brizantha. Salinity is one of the most important abiotic stresses that affect plant productivity. Quantitative gene expression using real-time PCR (RT-qPCR) is a powerful tool for measuring transcriptional changes that occur in plant tissues under stress. For valid RT-qPCR analysis, normalization against the appropriate reference genes is essential for data accuracy. Despite the importance of signal grass (syn. Urochloa) as a tropical forage, there are no studies on the stability of reference genes under saline stress in this species. This study aimed to evaluate the stability of seven candidate reference genes: Actin 12; eukaryotic initiation factor 4A; elongation factor 1- α; α-5 tubulin; β-6 tubulin; ubiquitin-conjugating enzyme and glucose-6-phosphate dehydrogenase for quantitative real-time PCR assays in Urochola brizantha under saline stress. Total RNA was extracted from leaves and roots of plants grown in a hydroponic system containing 200 mM NaCl for 0, 6, 12 and 24 hrs for RT-qPCR analysis. We used the RefFinder web tool to establish a comprehensive ranking for gene stability. We identified that eIF4a, α-Tub5 and Ubico were the most suitable reference genes for leaf samples, while eIF4a, Act12 and Ubico were the most stable genes in roots. The most and least stable genes were then used to normalize the relative expression of a Na+/H+ (NHX) transporter gene. The relative quantification of this gene varied according to the internal controls (more stable genes, less stable genes), confirming the choice of reference genes.Gramíneas forrageiras, dentre elas as do gênero Urochloa sp., possuem grande importância para as cadeias produtivas de carne e leite no Brasil, entretanto ainda há poucos estudos visando melhorar a tolerância à seca, considerando que com as mudanças climáticas previstas, há demanda por culturas resistentes a esse estresse. Plantas transgênicas com o gene P5CS de Vigna aconitifolia sob controle do promotor induzido por estresse AIPC, seriam uma alternativa adequada, considerando que a prolina exerce uma contribuição de extrema importância na mitigação da deficiência hídrica. O capítulo 1 dessa tese teve por objetivo avaliar plantas de Urochloa brizantha transformadas com a construção AIPC:P5CS quanto à bioquímica, fisiologia e caracterização molecular na resposta às condições de déficit hídrico. Para isso as plantas (controle e transformadas) foram conduzidas por aproximadamente 30 dias com irrigação diária por gotejamento, próximo à sua capacidade de campo, e após o déficit hídrico foi imposto por suspensão da água até as plantas atingirem valores de potencial hídrico de - 3,0 a -3,5 MPa, onde foram analisados conteúdo de prolina, MDA, clorofila, trocas gasosas foliares, biomassa e perfil transcricional do gene nativo UbP5CS e do transgene VaP5CS. A análise de três eventos de braquiária transformados com a construção AIPC:P5CS revelou que o evento E3 apresentou diferenças fisiológicas, bioquímicas e moleculares comparados aos outros eventos e ao controle. Além disso, esse evento exibiu diferença fenotípica dos demais. Mesmo apresentando essas diferenças, não houve constatação de maior tolerância ao déficit hídrico dos eventos em relação ao controle não transformado. O capítulo 2 refere-se a seleção de genes de referência para estresse salino em U. brizantha. A salinidade é um dos estresses abióticos mais importantes que afetam a produtividade das plantas. A expressão quantitativa de genes usando PCR em tempo real (RT-qPCR) é uma ferramenta que mensura as mudanças transcricionais que ocorrem em tecidos vegetais sob estresse. Para uma análise RT-qPCR válida, a normalização contra os genes de referência apropriados é essencial para a precisão dos dados. Apesar da importância do capim-braquiária (syn. Urochloa) como forrageira tropical, não há estudos sobre a estabilidade de genes de referência sob estresse salino nesta espécie. Este estudo teve como objetivo avaliar a estabilidade de sete genes candidatos de referência: Actin 12; fator de iniciação eucariótico 4A; fator de alongamento 1- α; tubulina α-5; tubulina β-6; enzima conjugadora de ubiquitina e glicose-6-fosfato desidrogenase para ensaios quantitativos de PCR em tempo real em U. brizantha sob estresse salino. O RNA total foi extraído de folhas e raízes de plantas cultivadas em sistema hidropônico contendo NaCl 200 mM durante 0, 6, 12 e 24 hrs para análise de RT-qPCR. Foi utilizado a ferramenta da web RefFinder para estabelecer uma classificação abrangente para a estabilidade do gene. Identificamos que eIF4a, α-Tub5 e Ubico foram os genes de referência mais adequados para amostras de folhas, enquanto eIF4a, Act12 e Ubico foram os genes mais estáveis nas raízes. Os genes mais e menos estáveis foram então usados para normalizar a expressão relativa de um gene transportador de Na+/H+ (NHX). A quantificação relativa desse gene variou de acordo com os controles internos (genes mais estáveis, menos estáveis), confirmando a escolha dos genes de referência.Submitted by Michele Mologni (mologni@unoeste.br) on 2023-01-11T13:34:41Z No. of bitstreams: 1 Flaive Loyze Baldassarini Silva.pdf: 2153505 bytes, checksum: ea735e9c2848911cf932c11a24d2471b (MD5)Made available in DSpace on 2023-01-11T13:34:41Z (GMT). No. of bitstreams: 1 Flaive Loyze Baldassarini Silva.pdf: 2153505 bytes, checksum: ea735e9c2848911cf932c11a24d2471b (MD5) Previous issue date: 2022-10-31Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESapplication/pdfhttp://bdtd.unoeste.br:8080/jspui/retrieve/4952/Flaive%20Loyze%20Baldassarini%20Silva.pdf.jpgporUniversidade do Oeste PaulistaDoutorado em AgronomiaUNOESTEBrasilDoutorado em Agronomiaprolina; estresse abiótico; normalizadores; forrageira.proline; abiotic stress; normalizers; forager.CIENCIAS AGRARIAS::AGRONOMIACaracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salinoCharacterization of transformed Urochloa brizantha plants under water stress and validation of reference genes for salt stressinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesis63419071533829402885005006006006341907153382940288-30911387149076039072075167498588264571info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UNOESTEinstname:Universidade do Oeste Paulista (UNOESTE)instacron:UNOESTETHUMBNAILFlaive Loyze Baldassarini Silva.pdf.jpgFlaive Loyze Baldassarini Silva.pdf.jpgimage/jpeg3614http://bdtd.unoeste.br:8080/tede/bitstream/jspui/1459/3/Flaive+Loyze+Baldassarini+Silva.pdf.jpg91d1a097a1acf88fbcaa1373a7f27824MD53ORIGINALFlaive Loyze Baldassarini Silva.pdfFlaive Loyze Baldassarini Silva.pdfapplication/pdf2153505http://bdtd.unoeste.br:8080/tede/bitstream/jspui/1459/2/Flaive+Loyze+Baldassarini+Silva.pdfea735e9c2848911cf932c11a24d2471bMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82067http://bdtd.unoeste.br:8080/tede/bitstream/jspui/1459/1/license.txt47745281809acb27fb322a97f2d9cb88MD51jspui/14592023-01-12 02:00:55.498oai:bdtd.unoeste.br: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 Digital de Teses e Dissertaçõeshttp://bdtd.unoeste.br:8080/jspui/PUBhttp://bdtd.unoeste.br:8080/oai/requestbdtd@unoeste.bropendoar:2023-01-12T04:00:55Biblioteca Digital de Teses e Dissertações da UNOESTE - Universidade do Oeste Paulista (UNOESTE)false
dc.title.por.fl_str_mv Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino
dc.title.alternative.eng.fl_str_mv Characterization of transformed Urochloa brizantha plants under water stress and validation of reference genes for salt stress
title Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino
spellingShingle Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino
Silva, Fláive Loyze Baldassarini
prolina; estresse abiótico; normalizadores; forrageira.
proline; abiotic stress; normalizers; forager.
CIENCIAS AGRARIAS::AGRONOMIA
title_short Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino
title_full Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino
title_fullStr Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino
title_full_unstemmed Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino
title_sort Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino
author Silva, Fláive Loyze Baldassarini
author_facet Silva, Fláive Loyze Baldassarini
author_role author
dc.contributor.advisor1.fl_str_mv Ribas, Alessandra Ferreira
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/9273720281917978
dc.contributor.referee1.fl_str_mv Santos, Tiago Benedito dos
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/5260887075219224
dc.contributor.referee2.fl_str_mv Barbosa, Alexandrius de Moraes
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/5812788963409642
dc.contributor.referee3.fl_str_mv Magalhães, Hélida Mara
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/3059331457723172
dc.contributor.referee4.fl_str_mv Silva, Daniel Fernandes da
dc.contributor.referee4Lattes.fl_str_mv http://lattes.cnpq.br/6562731599312560
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/4598602324231832
dc.contributor.author.fl_str_mv Silva, Fláive Loyze Baldassarini
contributor_str_mv Ribas, Alessandra Ferreira
Santos, Tiago Benedito dos
Barbosa, Alexandrius de Moraes
Magalhães, Hélida Mara
Silva, Daniel Fernandes da
dc.subject.por.fl_str_mv prolina; estresse abiótico; normalizadores; forrageira.
topic prolina; estresse abiótico; normalizadores; forrageira.
proline; abiotic stress; normalizers; forager.
CIENCIAS AGRARIAS::AGRONOMIA
dc.subject.eng.fl_str_mv proline; abiotic stress; normalizers; forager.
dc.subject.cnpq.fl_str_mv CIENCIAS AGRARIAS::AGRONOMIA
description Forage grasses, including those of the genus Urochloa sp., are of great importance for the meat and milk production chains in Brazil, however, there are still few studies aimed at improving drought tolerance, considering that with the predicted climate changes, there is a demand for resistant crops to that stress. Transgenic plants with the P5CS gene of Vigna aconitifolia under the control of the AIPC stress-induced promoter would be a suitable alternative, considering that proline plays an extremely important role in mitigating water deficit. Chapter 1 of this thesis aimed to evaluate U. brizantha plants transformed the AIPC:P5CS construct for biochemistry, physiology and molecular characterization in response to water deficit conditions. For this, the plants (control and transformed) were conducted for approximately 30 days with daily drip irrigation, close to their field capacity, and after the water deficit was imposed by water suspension until the plants reached water potential values of -3.0 to -3.5 MPa, where the content of proline, MDA, chlorophyll, leaf gas exchange, biomass and transcriptional profile of the native gene UbP5CS and the transgene VaP5CS were analyzed. The analysis of three brachiaria events transformed with the AIPC:P5CS construct revealed that the E3 event presented physiological, biochemical and molecular differences compared to the other events and the control. In addition, this event exhibited a phenotypic difference from the others. Even with these differences, there was no evidence of greater tolerance to the water deficit of the events in relation to the untransformed control. Chapter 2 refers to the selection of reference genes for salt stress in U. brizantha. Salinity is one of the most important abiotic stresses that affect plant productivity. Quantitative gene expression using real-time PCR (RT-qPCR) is a powerful tool for measuring transcriptional changes that occur in plant tissues under stress. For valid RT-qPCR analysis, normalization against the appropriate reference genes is essential for data accuracy. Despite the importance of signal grass (syn. Urochloa) as a tropical forage, there are no studies on the stability of reference genes under saline stress in this species. This study aimed to evaluate the stability of seven candidate reference genes: Actin 12; eukaryotic initiation factor 4A; elongation factor 1- α; α-5 tubulin; β-6 tubulin; ubiquitin-conjugating enzyme and glucose-6-phosphate dehydrogenase for quantitative real-time PCR assays in Urochola brizantha under saline stress. Total RNA was extracted from leaves and roots of plants grown in a hydroponic system containing 200 mM NaCl for 0, 6, 12 and 24 hrs for RT-qPCR analysis. We used the RefFinder web tool to establish a comprehensive ranking for gene stability. We identified that eIF4a, α-Tub5 and Ubico were the most suitable reference genes for leaf samples, while eIF4a, Act12 and Ubico were the most stable genes in roots. The most and least stable genes were then used to normalize the relative expression of a Na+/H+ (NHX) transporter gene. The relative quantification of this gene varied according to the internal controls (more stable genes, less stable genes), confirming the choice of reference genes.
publishDate 2022
dc.date.issued.fl_str_mv 2022-10-31
dc.date.accessioned.fl_str_mv 2023-01-11T13:34:41Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv Silva, Fláive Loyze Baldassarini. Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino. 2022. 109 f. Tese (Doutorado em Agronomia) - Universidade do Oeste Paulista, Presidente Prudente, 2022.
dc.identifier.uri.fl_str_mv http://bdtd.unoeste.br:8080/jspui/handle/jspui/1459
identifier_str_mv Silva, Fláive Loyze Baldassarini. Caracterização de plantas transformadas de Urochloa brizantha sob déficit hídrico e validação de genes de referência para estresse salino. 2022. 109 f. Tese (Doutorado em Agronomia) - Universidade do Oeste Paulista, Presidente Prudente, 2022.
url http://bdtd.unoeste.br:8080/jspui/handle/jspui/1459
dc.language.iso.fl_str_mv por
language por
dc.relation.program.fl_str_mv 6341907153382940288
dc.relation.confidence.fl_str_mv 500
500
600
600
dc.relation.department.fl_str_mv 6341907153382940288
dc.relation.cnpq.fl_str_mv -3091138714907603907
dc.relation.sponsorship.fl_str_mv 2075167498588264571
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade do Oeste Paulista
dc.publisher.program.fl_str_mv Doutorado em Agronomia
dc.publisher.initials.fl_str_mv UNOESTE
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Doutorado em Agronomia
publisher.none.fl_str_mv Universidade do Oeste Paulista
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações da UNOESTE
instname:Universidade do Oeste Paulista (UNOESTE)
instacron:UNOESTE
instname_str Universidade do Oeste Paulista (UNOESTE)
instacron_str UNOESTE
institution UNOESTE
reponame_str Biblioteca Digital de Teses e Dissertações da UNOESTE
collection Biblioteca Digital de Teses e Dissertações da UNOESTE
bitstream.url.fl_str_mv http://bdtd.unoeste.br:8080/tede/bitstream/jspui/1459/3/Flaive+Loyze+Baldassarini+Silva.pdf.jpg
http://bdtd.unoeste.br:8080/tede/bitstream/jspui/1459/2/Flaive+Loyze+Baldassarini+Silva.pdf
http://bdtd.unoeste.br:8080/tede/bitstream/jspui/1459/1/license.txt
bitstream.checksum.fl_str_mv 91d1a097a1acf88fbcaa1373a7f27824
ea735e9c2848911cf932c11a24d2471b
47745281809acb27fb322a97f2d9cb88
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da UNOESTE - Universidade do Oeste Paulista (UNOESTE)
repository.mail.fl_str_mv bdtd@unoeste.br
_version_ 1850079083650613248