Study of miR156-targeted SPL/SBP-box genes in the interaction between the atypical pathogen Moniliophthora perniciosa and Solanum lycopersicum cv. Micro-tom

Detalhes bibliográficos
Ano de defesa: 2021
Autor(a) principal: Carmo, Rafael Monteiro do
Orientador(a): Não Informado pela instituição
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: eng
Instituição de defesa: Biblioteca Digitais de Teses e Dissertações da USP
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: https://www.teses.usp.br/teses/disponiveis/64/64133/tde-04092023-162145/
Resumo: Witches\' Broom Disease (WBD), caused by the hemibiotrophic basidiomycete Moniliophthora perniciosa [syn. Crinipellis perniciosa (Stahel) Singer; Marasmiaceae s.l.], is the most significant disease of cacao (Theobroma cacao) in Brazil. M. perniciosa can infect a variety of hosts, allowing classification into three biotypes, C, L and S. The C-biotype infects cacao and related species. The L-biotype infects lianas (vines) without inducing symptoms. The S-biotype colonizes solanaceous plants such as tomato (Solanum lycopersicum). Our group has demonstrated that the tomato cultivar Micro-Tom (MT) is a suitable model for studying the biotrophic phase of the interaction with M. perniciosa. Mainly because the pathogen induces in MT symptoms of hypertrophy, stem hyperplasia, and uncontrolled branching, forming green brooms (symptoms characteristic of C-biotype infected T. cacao). However, the transition to the necrotrophic stage of the disease with the formation of basidiocarps has never been reported in tomato. Additionally, our group showed that cytokinins (CKs) are important for the development and progression of symptoms. Recently, the repression of proteins from the SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE (SPL/SBP-box) family of transcription factors has been shown to be part of the infection strategy of pathogens causing WBD-like diseases. Such transcription factors are plant specific and play essential functions for plant development (e.g. branching) in addition to acting in response to abiotic and biotic stresses. Furthermore, some members of this family have been described to interfere negatively with CK signaling. Interestingly, transgenic MT plants with low levels of SPL/SBPs, due to the overexpression of microRNA156 (156-OE, which down-regulates SPL/SBPs), have some phenotypic characteristics that resemble M. perniciosa-infected MT plants. Such as increased branching and number of locules in the fruits. Looking at our group previous mRNA-seq data from inoculated MT plants, we observed that the repression of SPL/SBPs is part of the M. perniciosa infection strategy. Thus, we investigated whether the repression of such proteins has an impact on susceptibility by inoculating 156-OE plants. Such plants showed not only more symptoms, but also increased severity of symptoms, greater pathogen colonization, and, for the first time in a tomato genotype, we noticed the transition to the necrotrophic stage, producing basidiocarps. Orthologs of the tomato SlSBP15 gene (e.g. arabidopsis AtSPL9) participate in the immune response and also in CK signaling. Thus, we inoculated plants that overexpress a version of this protein resistant to the downregulation by the microRNA156 (rSBP15-OE). These plants developed fewer symptoms, and symptoms developed were milder. Furthermore, they demonstrated less pathogen colonization than MT. Consistently, rSBP15-OE plants show induced defense and CK-degradation genes, which is possibly responsible for the reduction of symptoms. Meanwhile, 156-OE plants have repressed defense genes and induced CK-synthesis genes, which may be favoring the pathogen. Thus, this gene is a potential candidate for further studies involving resistance to M. perniciosa, with potential applications in cacao improvement
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spelling Study of miR156-targeted SPL/SBP-box genes in the interaction between the atypical pathogen Moniliophthora perniciosa and Solanum lycopersicum cv. Micro-tomEstudo dos genes SPL/SBP-box regulados pelo miR156 na interação entre o patógeno atípico Moniliophthora perniciosa e Solanum lycopersicum cv. Micro-tomplant-pathogenplanta-patógenoSQUAMOSA PROMOTER-BINDING PROTEIN-LIKESQUAMOSA PROMOTER-BINDING PROTEIN-LIKETheobroma cacaoTheobroma cacaoVassoura-de-bruxaWitches' Broom DiseaseWitches\' Broom Disease (WBD), caused by the hemibiotrophic basidiomycete Moniliophthora perniciosa [syn. Crinipellis perniciosa (Stahel) Singer; Marasmiaceae s.l.], is the most significant disease of cacao (Theobroma cacao) in Brazil. M. perniciosa can infect a variety of hosts, allowing classification into three biotypes, C, L and S. The C-biotype infects cacao and related species. The L-biotype infects lianas (vines) without inducing symptoms. The S-biotype colonizes solanaceous plants such as tomato (Solanum lycopersicum). Our group has demonstrated that the tomato cultivar Micro-Tom (MT) is a suitable model for studying the biotrophic phase of the interaction with M. perniciosa. Mainly because the pathogen induces in MT symptoms of hypertrophy, stem hyperplasia, and uncontrolled branching, forming green brooms (symptoms characteristic of C-biotype infected T. cacao). However, the transition to the necrotrophic stage of the disease with the formation of basidiocarps has never been reported in tomato. Additionally, our group showed that cytokinins (CKs) are important for the development and progression of symptoms. Recently, the repression of proteins from the SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE (SPL/SBP-box) family of transcription factors has been shown to be part of the infection strategy of pathogens causing WBD-like diseases. Such transcription factors are plant specific and play essential functions for plant development (e.g. branching) in addition to acting in response to abiotic and biotic stresses. Furthermore, some members of this family have been described to interfere negatively with CK signaling. Interestingly, transgenic MT plants with low levels of SPL/SBPs, due to the overexpression of microRNA156 (156-OE, which down-regulates SPL/SBPs), have some phenotypic characteristics that resemble M. perniciosa-infected MT plants. Such as increased branching and number of locules in the fruits. Looking at our group previous mRNA-seq data from inoculated MT plants, we observed that the repression of SPL/SBPs is part of the M. perniciosa infection strategy. Thus, we investigated whether the repression of such proteins has an impact on susceptibility by inoculating 156-OE plants. Such plants showed not only more symptoms, but also increased severity of symptoms, greater pathogen colonization, and, for the first time in a tomato genotype, we noticed the transition to the necrotrophic stage, producing basidiocarps. Orthologs of the tomato SlSBP15 gene (e.g. arabidopsis AtSPL9) participate in the immune response and also in CK signaling. Thus, we inoculated plants that overexpress a version of this protein resistant to the downregulation by the microRNA156 (rSBP15-OE). These plants developed fewer symptoms, and symptoms developed were milder. Furthermore, they demonstrated less pathogen colonization than MT. Consistently, rSBP15-OE plants show induced defense and CK-degradation genes, which is possibly responsible for the reduction of symptoms. Meanwhile, 156-OE plants have repressed defense genes and induced CK-synthesis genes, which may be favoring the pathogen. Thus, this gene is a potential candidate for further studies involving resistance to M. perniciosa, with potential applications in cacao improvementA vassoura-de-bruxa (VDB), causada pelo basidiomiceto hemibiotrófico Moniliophthora perniciosa [syn. Crinipellis perniciosa (Stahel) Singer; Marasmiaceae s.l.], é a mais significativa enfermidade do cacaueiro (Theobroma cacao) no Brasil. M. perniciosa pode infectar uma variedade de hospedeiros, permitindo a classificação em três biótipos, C, L e S. O biótipo-C infecta o cacaueiro e espécies aparentadas. O biótipo-L infecta lianas (cipós) sem induzir sintomas. Já o biótipo-S coloniza solanáceas, como tomateiro (Solanum lycopersicum). Nosso grupo ja demonstrou que a cultivar de tomateiro Micro-Tom (MT) é um modelo adequado para o estudo da fase biotrófica da interação com M. perniciosa. Pois, em MT, o fungo induz sintomas de hipertrofia, hiperplasia caulinar, ramificação descontrolada formando vassouras verdes (sintomas também característicos do cacaueiro infectado pelo biótipo-C). Porém, a transição para o estágio necrotrófico da doença com a formação de basidiocarpos nunca foi reportada em tomateiro. Adicionalmente, nosso grupo mostrou que citocininas (CKs) são importantes para o desenvolvimento e progressão dos sintomas. Recentemente foi comprovado que a repressão de proteínas da família de fatores de transcrição SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE (SPL/SBP-box) é parte da estratégia de infecção de patógenos causadores doenças semelhantes à VDB. Tais fatores de transcrição são específicos de plantas e desempenham funções indispensáveis para o desenvolvimento vegetal (e.g. ramificação) além de atuar na resposta à estresses abióticos e bióticos. Ademais, alguns membros dessa família foram descritos por interferir negativamente na sinalização de CK. Curiosamente, plantas transgênicas de MT com baixos níveis de SPL/SBPs pela superexpressão do microRNA156 (156-OE, o qual regula negativamente SPL/SBPs) apresentam algumas características fenotípicas que se assemelham às plantas de MT infectadas por M. perniciosa, como a perda de dominância apical e aumento do número de lóculos nos frutos. Olhando dados prévios do nosso grupo de mRNA-seq, proveniente de plantas de MT inoculadas, observamos que a repressão de SPL/SBPs é parte da estratégia de infecção de M. perniciosa. Dessa forma, investigamos se a repressão de tais proteínas possuem um impacto na susceptibilidade inoculando plantas com baixos níveis de SPL/SBPs. Tais plantas demonstraram não somente mais sintomas, como também maior severidade nos sintomas, maior colonização do patógeno e primeira vez em um genótipo de tomateiro foi notado a transição para o estágio necrotrófico, produzindo basidiocarpos. Ortólogos do gene SlSBP15 de tomateiro (AtSPL9 de arabidopsis e OsSPL14 de arroz) participam da resposta imune e também da sinalização de CK. Dessa forma, inoculamos plantas que superexpressam uma versão dessa proteína resistente à regulação negativa do microRNA156 (rSBP15-OE) para avaliar o papel dessa proteína na interação. Essas plantas desenvolveram menos sintomas, e os sintomas desenvolvidos foram mais brandos. Além disso, demonstraram uma menor colonização do patógeno que MT. Consistentemente, plantas rSBP15-OE apresentam genes de defesa e degradação de CK induzidos, o que possivelmente é responsável pela redução dos sintomas. Enquanto isso, plantas 156-OE possuem genes de defesa reprimidos e genes de síntese de CK induzidos, o que pode estar favorecendo o patógeno. Dessa forma, esse gene é um potencial candidato para mais estudos envolvendo resistência a M. perniciosa, com potenciais aplicações no melhoramento de cacaueiroBiblioteca Digitais de Teses e Dissertações da USPPeres, Lazaro Eustaquio PereiraSilva, Eder Marques daCarmo, Rafael Monteiro do2021-09-14info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/64/64133/tde-04092023-162145/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2023-10-10T17:30:02Zoai:teses.usp.br:tde-04092023-162145Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212023-10-10T17:30:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Study of miR156-targeted SPL/SBP-box genes in the interaction between the atypical pathogen Moniliophthora perniciosa and Solanum lycopersicum cv. Micro-tom
Estudo dos genes SPL/SBP-box regulados pelo miR156 na interação entre o patógeno atípico Moniliophthora perniciosa e Solanum lycopersicum cv. Micro-tom
title Study of miR156-targeted SPL/SBP-box genes in the interaction between the atypical pathogen Moniliophthora perniciosa and Solanum lycopersicum cv. Micro-tom
spellingShingle Study of miR156-targeted SPL/SBP-box genes in the interaction between the atypical pathogen Moniliophthora perniciosa and Solanum lycopersicum cv. Micro-tom
Carmo, Rafael Monteiro do
plant-pathogen
planta-patógeno
SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE
SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE
Theobroma cacao
Theobroma cacao
Vassoura-de-bruxa
Witches' Broom Disease
title_short Study of miR156-targeted SPL/SBP-box genes in the interaction between the atypical pathogen Moniliophthora perniciosa and Solanum lycopersicum cv. Micro-tom
title_full Study of miR156-targeted SPL/SBP-box genes in the interaction between the atypical pathogen Moniliophthora perniciosa and Solanum lycopersicum cv. Micro-tom
title_fullStr Study of miR156-targeted SPL/SBP-box genes in the interaction between the atypical pathogen Moniliophthora perniciosa and Solanum lycopersicum cv. Micro-tom
title_full_unstemmed Study of miR156-targeted SPL/SBP-box genes in the interaction between the atypical pathogen Moniliophthora perniciosa and Solanum lycopersicum cv. Micro-tom
title_sort Study of miR156-targeted SPL/SBP-box genes in the interaction between the atypical pathogen Moniliophthora perniciosa and Solanum lycopersicum cv. Micro-tom
author Carmo, Rafael Monteiro do
author_facet Carmo, Rafael Monteiro do
author_role author
dc.contributor.none.fl_str_mv Peres, Lazaro Eustaquio Pereira
Silva, Eder Marques da
dc.contributor.author.fl_str_mv Carmo, Rafael Monteiro do
dc.subject.por.fl_str_mv plant-pathogen
planta-patógeno
SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE
SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE
Theobroma cacao
Theobroma cacao
Vassoura-de-bruxa
Witches' Broom Disease
topic plant-pathogen
planta-patógeno
SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE
SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE
Theobroma cacao
Theobroma cacao
Vassoura-de-bruxa
Witches' Broom Disease
description Witches\' Broom Disease (WBD), caused by the hemibiotrophic basidiomycete Moniliophthora perniciosa [syn. Crinipellis perniciosa (Stahel) Singer; Marasmiaceae s.l.], is the most significant disease of cacao (Theobroma cacao) in Brazil. M. perniciosa can infect a variety of hosts, allowing classification into three biotypes, C, L and S. The C-biotype infects cacao and related species. The L-biotype infects lianas (vines) without inducing symptoms. The S-biotype colonizes solanaceous plants such as tomato (Solanum lycopersicum). Our group has demonstrated that the tomato cultivar Micro-Tom (MT) is a suitable model for studying the biotrophic phase of the interaction with M. perniciosa. Mainly because the pathogen induces in MT symptoms of hypertrophy, stem hyperplasia, and uncontrolled branching, forming green brooms (symptoms characteristic of C-biotype infected T. cacao). However, the transition to the necrotrophic stage of the disease with the formation of basidiocarps has never been reported in tomato. Additionally, our group showed that cytokinins (CKs) are important for the development and progression of symptoms. Recently, the repression of proteins from the SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE (SPL/SBP-box) family of transcription factors has been shown to be part of the infection strategy of pathogens causing WBD-like diseases. Such transcription factors are plant specific and play essential functions for plant development (e.g. branching) in addition to acting in response to abiotic and biotic stresses. Furthermore, some members of this family have been described to interfere negatively with CK signaling. Interestingly, transgenic MT plants with low levels of SPL/SBPs, due to the overexpression of microRNA156 (156-OE, which down-regulates SPL/SBPs), have some phenotypic characteristics that resemble M. perniciosa-infected MT plants. Such as increased branching and number of locules in the fruits. Looking at our group previous mRNA-seq data from inoculated MT plants, we observed that the repression of SPL/SBPs is part of the M. perniciosa infection strategy. Thus, we investigated whether the repression of such proteins has an impact on susceptibility by inoculating 156-OE plants. Such plants showed not only more symptoms, but also increased severity of symptoms, greater pathogen colonization, and, for the first time in a tomato genotype, we noticed the transition to the necrotrophic stage, producing basidiocarps. Orthologs of the tomato SlSBP15 gene (e.g. arabidopsis AtSPL9) participate in the immune response and also in CK signaling. Thus, we inoculated plants that overexpress a version of this protein resistant to the downregulation by the microRNA156 (rSBP15-OE). These plants developed fewer symptoms, and symptoms developed were milder. Furthermore, they demonstrated less pathogen colonization than MT. Consistently, rSBP15-OE plants show induced defense and CK-degradation genes, which is possibly responsible for the reduction of symptoms. Meanwhile, 156-OE plants have repressed defense genes and induced CK-synthesis genes, which may be favoring the pathogen. Thus, this gene is a potential candidate for further studies involving resistance to M. perniciosa, with potential applications in cacao improvement
publishDate 2021
dc.date.none.fl_str_mv 2021-09-14
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.teses.usp.br/teses/disponiveis/64/64133/tde-04092023-162145/
url https://www.teses.usp.br/teses/disponiveis/64/64133/tde-04092023-162145/
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv
dc.rights.driver.fl_str_mv Liberar o conteúdo para acesso público.
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Liberar o conteúdo para acesso público.
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
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dc.publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
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reponame:Biblioteca Digital de Teses e Dissertações da USP
instname:Universidade de São Paulo (USP)
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instname_str Universidade de São Paulo (USP)
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reponame_str Biblioteca Digital de Teses e Dissertações da USP
collection Biblioteca Digital de Teses e Dissertações da USP
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)
repository.mail.fl_str_mv virginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.br
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