Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria

Detalhes bibliográficos
Ano de defesa: 2025
Autor(a) principal: Borbon Cortes, Mayerli Tatiana
Orientador(a): Não Informado pela instituição
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: eng
Instituição de defesa: Biblioteca Digitais de Teses e Dissertações da USP
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: https://www.teses.usp.br/teses/disponiveis/11/11146/tde-05032026-160826/
Resumo: Psyllids are important vectors of phloem-restricted bacteria, including Candidatus Liberibacter and Ca. Phytoplasma, which are presumably associated with devastating plant diseases such as Huanglongbing, zebra chip, and pear decline, among others. Understanding the composition of their bacterial communities is essential for elucidating the interactions within intricate ecological networks and the evolutionary processes that shape associations between psyllids and microorganisms. In this study, conventional bacterial molecular diagnostic methods and next-generation sequencing (16S rRNA gene amplicon) were integrated to characterize the microbiome of psyllids and their host plants collected in the field. In addition, metagenomic approaches were used to investigate the composition and profile of the microbiota associated with Russelliana solanicola, the South American potato psyllid. The capacity to acquire Huanglongbing (HLB)-associated bacteria was also evaluated in psyllid species other than Diaphorina citri. Field surveys conducted in the State of São Paulo, Brazil, identified distinct associations involving 14 psyllid species belonging to the families Psyllidae, Aphalaridae, and Triozidae, and 24 plant species, predominantly from the family Fabaceae. For the first time, Ca. Liberibacter sp. was detected in the polyphagous psyllid R. solanicola, as well as in its host plant Parthenium hysterophorus. Metagenomic data allowed the partial assembly of the genome of this Ca. Liberibacter species, which showed a close phylogenetic relationship with Ca. L. americanus, Ca. L. europaeus, and Ca. L. capsica. Metagenomic analyses also revealed three MAGs (metagenome-assembled genomes), including two highquality genomes representing potential endosymbionts of the genera Sodalis and Wolbachia, and one incomplete MAG assigned to Spiroplasma, which were the most abundant in R. solanicola. The MAG potentially identified as Sodalis (mRsS25) represented a novel lineage, harboring genes associated with host invasion, symbiosis establishment, and quorum-sensing communication. Experimental assays demonstrated that psyllids that occasionally land on citrus plants under natural conditions, such as Isogonoceraia divergipennis, Heteropsylla cubana, and Triozoida limbata, are capable of acquiring Ca. Liberibacter asiaticus from citrus, albeit at lower rates than those observed for D. citri. Moreover, T. limbata presumably retained the bacterium in the salivary glands after the latency period. Collectively, these results provide genomic and functional insights into psyllid microbiota, reveal potential novel bacterial lineages and/or symbiotic associations, and highlight the potential epidemiological relevance of polyphagous psyllids as reservoirs or bridge species of HLB-associated bacteria between cultivated and non-cultivated host plants.
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spelling Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteriaAnálises genômicas e funcionais da microbiota de psilídeos e avaliação da competência como vetores de bactérias associadas ao HuanglongbingCandidatus LiberibacterCandidatus LiberibacterEndosymbiontesEndosymbiontsHuanglongbingHuanglongbingMetagenômicaMetagenomicsMicrobioma de psilídeosPsyllid microbiomePsyllids are important vectors of phloem-restricted bacteria, including Candidatus Liberibacter and Ca. Phytoplasma, which are presumably associated with devastating plant diseases such as Huanglongbing, zebra chip, and pear decline, among others. Understanding the composition of their bacterial communities is essential for elucidating the interactions within intricate ecological networks and the evolutionary processes that shape associations between psyllids and microorganisms. In this study, conventional bacterial molecular diagnostic methods and next-generation sequencing (16S rRNA gene amplicon) were integrated to characterize the microbiome of psyllids and their host plants collected in the field. In addition, metagenomic approaches were used to investigate the composition and profile of the microbiota associated with Russelliana solanicola, the South American potato psyllid. The capacity to acquire Huanglongbing (HLB)-associated bacteria was also evaluated in psyllid species other than Diaphorina citri. Field surveys conducted in the State of São Paulo, Brazil, identified distinct associations involving 14 psyllid species belonging to the families Psyllidae, Aphalaridae, and Triozidae, and 24 plant species, predominantly from the family Fabaceae. For the first time, Ca. Liberibacter sp. was detected in the polyphagous psyllid R. solanicola, as well as in its host plant Parthenium hysterophorus. Metagenomic data allowed the partial assembly of the genome of this Ca. Liberibacter species, which showed a close phylogenetic relationship with Ca. L. americanus, Ca. L. europaeus, and Ca. L. capsica. Metagenomic analyses also revealed three MAGs (metagenome-assembled genomes), including two highquality genomes representing potential endosymbionts of the genera Sodalis and Wolbachia, and one incomplete MAG assigned to Spiroplasma, which were the most abundant in R. solanicola. The MAG potentially identified as Sodalis (mRsS25) represented a novel lineage, harboring genes associated with host invasion, symbiosis establishment, and quorum-sensing communication. Experimental assays demonstrated that psyllids that occasionally land on citrus plants under natural conditions, such as Isogonoceraia divergipennis, Heteropsylla cubana, and Triozoida limbata, are capable of acquiring Ca. Liberibacter asiaticus from citrus, albeit at lower rates than those observed for D. citri. Moreover, T. limbata presumably retained the bacterium in the salivary glands after the latency period. Collectively, these results provide genomic and functional insights into psyllid microbiota, reveal potential novel bacterial lineages and/or symbiotic associations, and highlight the potential epidemiological relevance of polyphagous psyllids as reservoirs or bridge species of HLB-associated bacteria between cultivated and non-cultivated host plants.Os psilídeos são importantes vetores de bactérias restritas ao floema, incluindo Candidatus Liberibacter e Ca. Phytoplasma, as quais estão presumivelmente associadas a doenças devastadoras de plantas, como o Huanglongbing, a Zebra chip e o Declínio da pereira, por exemplo. Conhecer a composição de suas comunidades bacterianas é essencial para compreender as interações das intrincadas redes ecológicas e os processos evolutivos que moldam as associações entre psilídeos e microrganismos. Neste estudo, métodos convencionais de diagnóstico molecular bacteriano e next-generation sequencing (amplicon do gene 16S rRNA) foram integrados para caracterizar o microbioma de psilídeos e de suas plantas hospedeiras coletados em campo. Além disso, abordagens metagenômicas foram utilizadas para investigar a composição e o perfil da microbiota associada Russelliana solanicola, o psilídeoda-batata sul-americano. Também foi analisada a capacidade de aquisição de bactérias associadas ao Huanglongbing (HLB) por especies de psilídeos diferentes a Diaphorina citri. Os levantamentos de campo realizados no Estado de São Paulo, Brasil, identificaram diferentes associações entre 14 espécies de psilídeos pertencentes às famílias Psyllidae, Aphalaridae e Triozidae, e 24 espécies de plantas, predominantemente da família Fabaceae. Pela primeira vez, Ca. Liberibacter sp. foi detectada no psilídeo polífago R. solanicola, bem como em sua planta hospedeira Parthenium hysterophorus. Dados metagenômicos permitiram ensamblar parcialmente o genoma desta espécie de Ca. Liberibacter, a qual mostrou relação filogenética próxima com Ca. L. americanus, Ca. L. europaeus e Ca. L. capsica. As análises metagenômicas também revelaram três MAGs (metagenome-assembled genomes), incluindo dois genomas de alta qualidade que representam potenciais endossimbiontes dos gêneros Sodalis e Wolbachia, e um MAG incompleto atribuído a Spiroplasma, sendo estes os mais abundantes em R. solanicola. O MAG potencialmente identificado como Sodalis (mRsS25) representou uma linhagem inédita, portando genes associados à invasão do hospedeiro, ao estabelecimento da simbiose e à comunicação por quorum sensing. Ensaios experimentais demonstraram que psilídeos que pousam ocasionalmente em plantas de citros em condições naturais, como Isogonoceraia divergipennis, Heteropsylla cubana e Triozoida limbata, podem adquirir Ca. Liberibacter asiaticus dos citros, ainda que em taxas inferiores às observadas para D. citri. Ademais, T. limbata presumivelmente reteve a bactéria nas glândulas salivares após o período de latência. Coletivamente, esses resultados fornecem insights genômicos e funcionais sobre a microbiota dos psilídeos, revelam potenciais novas linhagens bacterianas e/ou associações simbióticas, e ressaltam a relevância epidemiológica potencial de psilídeos polífagos como reservatórios ou espécies ponte de bactérias associadas ao HLB entre plantas hospedeiras cultivadas e não cultivadas.Biblioteca Digitais de Teses e Dissertações da USPLopes, Joao Roberto SpottiSetubal, João CarlosBorbon Cortes, Mayerli Tatiana 2025-12-16info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/11/11146/tde-05032026-160826/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2026-03-09T19:11:02Zoai:teses.usp.br:tde-05032026-160826Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212026-03-09T19:11:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria
Análises genômicas e funcionais da microbiota de psilídeos e avaliação da competência como vetores de bactérias associadas ao Huanglongbing
title Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria
spellingShingle Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria
Borbon Cortes, Mayerli Tatiana
Candidatus Liberibacter
Candidatus Liberibacter
Endosymbiontes
Endosymbionts
Huanglongbing
Huanglongbing
Metagenômica
Metagenomics
Microbioma de psilídeos
Psyllid microbiome
title_short Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria
title_full Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria
title_fullStr Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria
title_full_unstemmed Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria
title_sort Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria
author Borbon Cortes, Mayerli Tatiana
author_facet Borbon Cortes, Mayerli Tatiana
author_role author
dc.contributor.none.fl_str_mv Lopes, Joao Roberto Spotti
Setubal, João Carlos
dc.contributor.author.fl_str_mv Borbon Cortes, Mayerli Tatiana
dc.subject.por.fl_str_mv Candidatus Liberibacter
Candidatus Liberibacter
Endosymbiontes
Endosymbionts
Huanglongbing
Huanglongbing
Metagenômica
Metagenomics
Microbioma de psilídeos
Psyllid microbiome
topic Candidatus Liberibacter
Candidatus Liberibacter
Endosymbiontes
Endosymbionts
Huanglongbing
Huanglongbing
Metagenômica
Metagenomics
Microbioma de psilídeos
Psyllid microbiome
description Psyllids are important vectors of phloem-restricted bacteria, including Candidatus Liberibacter and Ca. Phytoplasma, which are presumably associated with devastating plant diseases such as Huanglongbing, zebra chip, and pear decline, among others. Understanding the composition of their bacterial communities is essential for elucidating the interactions within intricate ecological networks and the evolutionary processes that shape associations between psyllids and microorganisms. In this study, conventional bacterial molecular diagnostic methods and next-generation sequencing (16S rRNA gene amplicon) were integrated to characterize the microbiome of psyllids and their host plants collected in the field. In addition, metagenomic approaches were used to investigate the composition and profile of the microbiota associated with Russelliana solanicola, the South American potato psyllid. The capacity to acquire Huanglongbing (HLB)-associated bacteria was also evaluated in psyllid species other than Diaphorina citri. Field surveys conducted in the State of São Paulo, Brazil, identified distinct associations involving 14 psyllid species belonging to the families Psyllidae, Aphalaridae, and Triozidae, and 24 plant species, predominantly from the family Fabaceae. For the first time, Ca. Liberibacter sp. was detected in the polyphagous psyllid R. solanicola, as well as in its host plant Parthenium hysterophorus. Metagenomic data allowed the partial assembly of the genome of this Ca. Liberibacter species, which showed a close phylogenetic relationship with Ca. L. americanus, Ca. L. europaeus, and Ca. L. capsica. Metagenomic analyses also revealed three MAGs (metagenome-assembled genomes), including two highquality genomes representing potential endosymbionts of the genera Sodalis and Wolbachia, and one incomplete MAG assigned to Spiroplasma, which were the most abundant in R. solanicola. The MAG potentially identified as Sodalis (mRsS25) represented a novel lineage, harboring genes associated with host invasion, symbiosis establishment, and quorum-sensing communication. Experimental assays demonstrated that psyllids that occasionally land on citrus plants under natural conditions, such as Isogonoceraia divergipennis, Heteropsylla cubana, and Triozoida limbata, are capable of acquiring Ca. Liberibacter asiaticus from citrus, albeit at lower rates than those observed for D. citri. Moreover, T. limbata presumably retained the bacterium in the salivary glands after the latency period. Collectively, these results provide genomic and functional insights into psyllid microbiota, reveal potential novel bacterial lineages and/or symbiotic associations, and highlight the potential epidemiological relevance of polyphagous psyllids as reservoirs or bridge species of HLB-associated bacteria between cultivated and non-cultivated host plants.
publishDate 2025
dc.date.none.fl_str_mv 2025-12-16
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.teses.usp.br/teses/disponiveis/11/11146/tde-05032026-160826/
url https://www.teses.usp.br/teses/disponiveis/11/11146/tde-05032026-160826/
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv
dc.rights.driver.fl_str_mv Liberar o conteúdo para acesso público.
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Liberar o conteúdo para acesso público.
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
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dc.publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
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reponame:Biblioteca Digital de Teses e Dissertações da USP
instname:Universidade de São Paulo (USP)
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repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)
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