Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria
| Ano de defesa: | 2025 |
|---|---|
| Autor(a) principal: | |
| Orientador(a): | |
| Banca de defesa: | |
| Tipo de documento: | Tese |
| Tipo de acesso: | Acesso aberto |
| Idioma: | eng |
| Instituição de defesa: |
Biblioteca Digitais de Teses e Dissertações da USP
|
| Programa de Pós-Graduação: |
Não Informado pela instituição
|
| Departamento: |
Não Informado pela instituição
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| País: |
Não Informado pela instituição
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| Palavras-chave em Português: | |
| Link de acesso: | https://www.teses.usp.br/teses/disponiveis/11/11146/tde-05032026-160826/ |
Resumo: | Psyllids are important vectors of phloem-restricted bacteria, including Candidatus Liberibacter and Ca. Phytoplasma, which are presumably associated with devastating plant diseases such as Huanglongbing, zebra chip, and pear decline, among others. Understanding the composition of their bacterial communities is essential for elucidating the interactions within intricate ecological networks and the evolutionary processes that shape associations between psyllids and microorganisms. In this study, conventional bacterial molecular diagnostic methods and next-generation sequencing (16S rRNA gene amplicon) were integrated to characterize the microbiome of psyllids and their host plants collected in the field. In addition, metagenomic approaches were used to investigate the composition and profile of the microbiota associated with Russelliana solanicola, the South American potato psyllid. The capacity to acquire Huanglongbing (HLB)-associated bacteria was also evaluated in psyllid species other than Diaphorina citri. Field surveys conducted in the State of São Paulo, Brazil, identified distinct associations involving 14 psyllid species belonging to the families Psyllidae, Aphalaridae, and Triozidae, and 24 plant species, predominantly from the family Fabaceae. For the first time, Ca. Liberibacter sp. was detected in the polyphagous psyllid R. solanicola, as well as in its host plant Parthenium hysterophorus. Metagenomic data allowed the partial assembly of the genome of this Ca. Liberibacter species, which showed a close phylogenetic relationship with Ca. L. americanus, Ca. L. europaeus, and Ca. L. capsica. Metagenomic analyses also revealed three MAGs (metagenome-assembled genomes), including two highquality genomes representing potential endosymbionts of the genera Sodalis and Wolbachia, and one incomplete MAG assigned to Spiroplasma, which were the most abundant in R. solanicola. The MAG potentially identified as Sodalis (mRsS25) represented a novel lineage, harboring genes associated with host invasion, symbiosis establishment, and quorum-sensing communication. Experimental assays demonstrated that psyllids that occasionally land on citrus plants under natural conditions, such as Isogonoceraia divergipennis, Heteropsylla cubana, and Triozoida limbata, are capable of acquiring Ca. Liberibacter asiaticus from citrus, albeit at lower rates than those observed for D. citri. Moreover, T. limbata presumably retained the bacterium in the salivary glands after the latency period. Collectively, these results provide genomic and functional insights into psyllid microbiota, reveal potential novel bacterial lineages and/or symbiotic associations, and highlight the potential epidemiological relevance of polyphagous psyllids as reservoirs or bridge species of HLB-associated bacteria between cultivated and non-cultivated host plants. |
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Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteriaAnálises genômicas e funcionais da microbiota de psilídeos e avaliação da competência como vetores de bactérias associadas ao HuanglongbingCandidatus LiberibacterCandidatus LiberibacterEndosymbiontesEndosymbiontsHuanglongbingHuanglongbingMetagenômicaMetagenomicsMicrobioma de psilídeosPsyllid microbiomePsyllids are important vectors of phloem-restricted bacteria, including Candidatus Liberibacter and Ca. Phytoplasma, which are presumably associated with devastating plant diseases such as Huanglongbing, zebra chip, and pear decline, among others. Understanding the composition of their bacterial communities is essential for elucidating the interactions within intricate ecological networks and the evolutionary processes that shape associations between psyllids and microorganisms. In this study, conventional bacterial molecular diagnostic methods and next-generation sequencing (16S rRNA gene amplicon) were integrated to characterize the microbiome of psyllids and their host plants collected in the field. In addition, metagenomic approaches were used to investigate the composition and profile of the microbiota associated with Russelliana solanicola, the South American potato psyllid. The capacity to acquire Huanglongbing (HLB)-associated bacteria was also evaluated in psyllid species other than Diaphorina citri. Field surveys conducted in the State of São Paulo, Brazil, identified distinct associations involving 14 psyllid species belonging to the families Psyllidae, Aphalaridae, and Triozidae, and 24 plant species, predominantly from the family Fabaceae. For the first time, Ca. Liberibacter sp. was detected in the polyphagous psyllid R. solanicola, as well as in its host plant Parthenium hysterophorus. Metagenomic data allowed the partial assembly of the genome of this Ca. Liberibacter species, which showed a close phylogenetic relationship with Ca. L. americanus, Ca. L. europaeus, and Ca. L. capsica. Metagenomic analyses also revealed three MAGs (metagenome-assembled genomes), including two highquality genomes representing potential endosymbionts of the genera Sodalis and Wolbachia, and one incomplete MAG assigned to Spiroplasma, which were the most abundant in R. solanicola. The MAG potentially identified as Sodalis (mRsS25) represented a novel lineage, harboring genes associated with host invasion, symbiosis establishment, and quorum-sensing communication. Experimental assays demonstrated that psyllids that occasionally land on citrus plants under natural conditions, such as Isogonoceraia divergipennis, Heteropsylla cubana, and Triozoida limbata, are capable of acquiring Ca. Liberibacter asiaticus from citrus, albeit at lower rates than those observed for D. citri. Moreover, T. limbata presumably retained the bacterium in the salivary glands after the latency period. Collectively, these results provide genomic and functional insights into psyllid microbiota, reveal potential novel bacterial lineages and/or symbiotic associations, and highlight the potential epidemiological relevance of polyphagous psyllids as reservoirs or bridge species of HLB-associated bacteria between cultivated and non-cultivated host plants.Os psilídeos são importantes vetores de bactérias restritas ao floema, incluindo Candidatus Liberibacter e Ca. Phytoplasma, as quais estão presumivelmente associadas a doenças devastadoras de plantas, como o Huanglongbing, a Zebra chip e o Declínio da pereira, por exemplo. Conhecer a composição de suas comunidades bacterianas é essencial para compreender as interações das intrincadas redes ecológicas e os processos evolutivos que moldam as associações entre psilídeos e microrganismos. Neste estudo, métodos convencionais de diagnóstico molecular bacteriano e next-generation sequencing (amplicon do gene 16S rRNA) foram integrados para caracterizar o microbioma de psilídeos e de suas plantas hospedeiras coletados em campo. Além disso, abordagens metagenômicas foram utilizadas para investigar a composição e o perfil da microbiota associada Russelliana solanicola, o psilídeoda-batata sul-americano. Também foi analisada a capacidade de aquisição de bactérias associadas ao Huanglongbing (HLB) por especies de psilídeos diferentes a Diaphorina citri. Os levantamentos de campo realizados no Estado de São Paulo, Brasil, identificaram diferentes associações entre 14 espécies de psilídeos pertencentes às famílias Psyllidae, Aphalaridae e Triozidae, e 24 espécies de plantas, predominantemente da família Fabaceae. Pela primeira vez, Ca. Liberibacter sp. foi detectada no psilídeo polífago R. solanicola, bem como em sua planta hospedeira Parthenium hysterophorus. Dados metagenômicos permitiram ensamblar parcialmente o genoma desta espécie de Ca. Liberibacter, a qual mostrou relação filogenética próxima com Ca. L. americanus, Ca. L. europaeus e Ca. L. capsica. As análises metagenômicas também revelaram três MAGs (metagenome-assembled genomes), incluindo dois genomas de alta qualidade que representam potenciais endossimbiontes dos gêneros Sodalis e Wolbachia, e um MAG incompleto atribuído a Spiroplasma, sendo estes os mais abundantes em R. solanicola. O MAG potencialmente identificado como Sodalis (mRsS25) representou uma linhagem inédita, portando genes associados à invasão do hospedeiro, ao estabelecimento da simbiose e à comunicação por quorum sensing. Ensaios experimentais demonstraram que psilídeos que pousam ocasionalmente em plantas de citros em condições naturais, como Isogonoceraia divergipennis, Heteropsylla cubana e Triozoida limbata, podem adquirir Ca. Liberibacter asiaticus dos citros, ainda que em taxas inferiores às observadas para D. citri. Ademais, T. limbata presumivelmente reteve a bactéria nas glândulas salivares após o período de latência. Coletivamente, esses resultados fornecem insights genômicos e funcionais sobre a microbiota dos psilídeos, revelam potenciais novas linhagens bacterianas e/ou associações simbióticas, e ressaltam a relevância epidemiológica potencial de psilídeos polífagos como reservatórios ou espécies ponte de bactérias associadas ao HLB entre plantas hospedeiras cultivadas e não cultivadas.Biblioteca Digitais de Teses e Dissertações da USPLopes, Joao Roberto SpottiSetubal, João CarlosBorbon Cortes, Mayerli Tatiana 2025-12-16info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/11/11146/tde-05032026-160826/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2026-03-09T19:11:02Zoai:teses.usp.br:tde-05032026-160826Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212026-03-09T19:11:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false |
| dc.title.none.fl_str_mv |
Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria Análises genômicas e funcionais da microbiota de psilídeos e avaliação da competência como vetores de bactérias associadas ao Huanglongbing |
| title |
Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria |
| spellingShingle |
Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria Borbon Cortes, Mayerli Tatiana Candidatus Liberibacter Candidatus Liberibacter Endosymbiontes Endosymbionts Huanglongbing Huanglongbing Metagenômica Metagenomics Microbioma de psilídeos Psyllid microbiome |
| title_short |
Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria |
| title_full |
Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria |
| title_fullStr |
Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria |
| title_full_unstemmed |
Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria |
| title_sort |
Genomic and functional insights into psyllids microbiota and analysis of vector competence for Huanglongbing-associated bacteria |
| author |
Borbon Cortes, Mayerli Tatiana |
| author_facet |
Borbon Cortes, Mayerli Tatiana |
| author_role |
author |
| dc.contributor.none.fl_str_mv |
Lopes, Joao Roberto Spotti Setubal, João Carlos |
| dc.contributor.author.fl_str_mv |
Borbon Cortes, Mayerli Tatiana |
| dc.subject.por.fl_str_mv |
Candidatus Liberibacter Candidatus Liberibacter Endosymbiontes Endosymbionts Huanglongbing Huanglongbing Metagenômica Metagenomics Microbioma de psilídeos Psyllid microbiome |
| topic |
Candidatus Liberibacter Candidatus Liberibacter Endosymbiontes Endosymbionts Huanglongbing Huanglongbing Metagenômica Metagenomics Microbioma de psilídeos Psyllid microbiome |
| description |
Psyllids are important vectors of phloem-restricted bacteria, including Candidatus Liberibacter and Ca. Phytoplasma, which are presumably associated with devastating plant diseases such as Huanglongbing, zebra chip, and pear decline, among others. Understanding the composition of their bacterial communities is essential for elucidating the interactions within intricate ecological networks and the evolutionary processes that shape associations between psyllids and microorganisms. In this study, conventional bacterial molecular diagnostic methods and next-generation sequencing (16S rRNA gene amplicon) were integrated to characterize the microbiome of psyllids and their host plants collected in the field. In addition, metagenomic approaches were used to investigate the composition and profile of the microbiota associated with Russelliana solanicola, the South American potato psyllid. The capacity to acquire Huanglongbing (HLB)-associated bacteria was also evaluated in psyllid species other than Diaphorina citri. Field surveys conducted in the State of São Paulo, Brazil, identified distinct associations involving 14 psyllid species belonging to the families Psyllidae, Aphalaridae, and Triozidae, and 24 plant species, predominantly from the family Fabaceae. For the first time, Ca. Liberibacter sp. was detected in the polyphagous psyllid R. solanicola, as well as in its host plant Parthenium hysterophorus. Metagenomic data allowed the partial assembly of the genome of this Ca. Liberibacter species, which showed a close phylogenetic relationship with Ca. L. americanus, Ca. L. europaeus, and Ca. L. capsica. Metagenomic analyses also revealed three MAGs (metagenome-assembled genomes), including two highquality genomes representing potential endosymbionts of the genera Sodalis and Wolbachia, and one incomplete MAG assigned to Spiroplasma, which were the most abundant in R. solanicola. The MAG potentially identified as Sodalis (mRsS25) represented a novel lineage, harboring genes associated with host invasion, symbiosis establishment, and quorum-sensing communication. Experimental assays demonstrated that psyllids that occasionally land on citrus plants under natural conditions, such as Isogonoceraia divergipennis, Heteropsylla cubana, and Triozoida limbata, are capable of acquiring Ca. Liberibacter asiaticus from citrus, albeit at lower rates than those observed for D. citri. Moreover, T. limbata presumably retained the bacterium in the salivary glands after the latency period. Collectively, these results provide genomic and functional insights into psyllid microbiota, reveal potential novel bacterial lineages and/or symbiotic associations, and highlight the potential epidemiological relevance of polyphagous psyllids as reservoirs or bridge species of HLB-associated bacteria between cultivated and non-cultivated host plants. |
| publishDate |
2025 |
| dc.date.none.fl_str_mv |
2025-12-16 |
| dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.driver.fl_str_mv |
info:eu-repo/semantics/doctoralThesis |
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doctoralThesis |
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publishedVersion |
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https://www.teses.usp.br/teses/disponiveis/11/11146/tde-05032026-160826/ |
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https://www.teses.usp.br/teses/disponiveis/11/11146/tde-05032026-160826/ |
| dc.language.iso.fl_str_mv |
eng |
| language |
eng |
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Liberar o conteúdo para acesso público. info:eu-repo/semantics/openAccess |
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Liberar o conteúdo para acesso público. |
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openAccess |
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application/pdf |
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Biblioteca Digitais de Teses e Dissertações da USP |
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Biblioteca Digitais de Teses e Dissertações da USP |
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reponame:Biblioteca Digital de Teses e Dissertações da USP instname:Universidade de São Paulo (USP) instacron:USP |
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Universidade de São Paulo (USP) |
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USP |
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USP |
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Biblioteca Digital de Teses e Dissertações da USP |
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Biblioteca Digital de Teses e Dissertações da USP |
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Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP) |
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