Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization

Detalhes bibliográficos
Ano de defesa: 2024
Autor(a) principal: Chagas, Rafael Siqueira
Orientador(a): Não Informado pela instituição
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: eng
Instituição de defesa: Biblioteca Digitais de Teses e Dissertações da USP
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: https://www.teses.usp.br/teses/disponiveis/46/46131/tde-15042025-123421/
Resumo: This work initially investigated the interaction and inhibition of two usual inhibitors, Imidazole and Tris, on the GH1 β-glucosidase from Spodoptera frugiperda (Sfβgly). In the first chapter, we demonstrated that imidazole reduces the activity of Sfβgly through a partial competitive inhibition mechanism, interacting with the enzyme\'s active site and decreasing substrate affinity. The second chapter shows that Tris acts as a mixed linear inhibitor, forming a nonproductive ESI complex. Both inhibitors can lead to underestimations of kinetic constants in the characterization of GH1 group enzymes. In the third chapter, using site-directed mutations in the enzyme\'s active site pocket, we developed a unified kinetic model that integrates six basic inhibition mechanisms (competitive, non-competitive, and mixed) into a single framework, proposing that these mechanisms are not isolated compartments but rather aspects of the same model. Finally, in the fourth chapter, we investigated the homodimerization of Sfβgly, highlighting that dimer stability is influenced by apolar residues and hydrogen bonds at the interface between the monomers. These findings not only enhance the understanding of oligomerization in GH1 β-glucosidases but also have significant implications for protein design and function.
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spelling Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and DimerizationEstudo com a β-Glucosidase de Spodoptera frugiperda: Inibição por Imidazol e Tris, e Dimerizaçãoβ-glucosidaseβ-glucosidaseHomodimerhomodímeroImidazolImidazoleInhibitionInibiçãoTrisTrisThis work initially investigated the interaction and inhibition of two usual inhibitors, Imidazole and Tris, on the GH1 β-glucosidase from Spodoptera frugiperda (Sfβgly). In the first chapter, we demonstrated that imidazole reduces the activity of Sfβgly through a partial competitive inhibition mechanism, interacting with the enzyme\'s active site and decreasing substrate affinity. The second chapter shows that Tris acts as a mixed linear inhibitor, forming a nonproductive ESI complex. Both inhibitors can lead to underestimations of kinetic constants in the characterization of GH1 group enzymes. In the third chapter, using site-directed mutations in the enzyme\'s active site pocket, we developed a unified kinetic model that integrates six basic inhibition mechanisms (competitive, non-competitive, and mixed) into a single framework, proposing that these mechanisms are not isolated compartments but rather aspects of the same model. Finally, in the fourth chapter, we investigated the homodimerization of Sfβgly, highlighting that dimer stability is influenced by apolar residues and hydrogen bonds at the interface between the monomers. These findings not only enhance the understanding of oligomerization in GH1 β-glucosidases but also have significant implications for protein design and function.Este trabalho investigou inicialmente a interação e inibição de dois inibidores comuns, imidazol e Tris, na β-glucosidase GH1 de Spodoptera frugiperda (Sfβgly). No primeiro capítulo, demonstramos que o imidazol reduz a atividade da Sfβgly por um mecanismo de inibição competitivo parcial, interagindo com o sítio ativo da enzima e diminuindo a afinidade pelo substrato. O segundo capítulo demonstra que o Tris atua como um inibidor misto linear, formando um complexo ESI que não é produtivo. Ambos os inibidores demonstram que sua presença pode causar subestimações nas constantes cinéticas na caracterização de enzimas do grupo GH1. No terceiro capítulo, a partir de mutações sítio-dirigidas no bolsão de sítio ativo da enzima, desenvolvemos um modelo cinético unificado que integra seis mecanismos básicos de inibição (competitiva, não competitiva e mista) em um único, propondo que esses mecanismos não são compartimentos isolados, mas aspectos de um mesmo modelo. Por fim, no quarto capítulo, investigamos a homodimerização de Sfβgly, evidenciando que a estabilidade do dímero é influenciada por resíduos apolares e ligações de hidrogênio na interface de contato entre os monômeros. Esses resultados não só ampliam a compreensão sobre a oligomerização de enzimas GH1 β-glucosidases, mas também têm implicações significativas para o design e a função de proteínas.Biblioteca Digitais de Teses e Dissertações da USPMarana, Sandro RobertoChagas, Rafael Siqueira2024-10-23info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/46/46131/tde-15042025-123421/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2025-05-05T20:54:02Zoai:teses.usp.br:tde-15042025-123421Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212025-05-05T20:54:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization
Estudo com a β-Glucosidase de Spodoptera frugiperda: Inibição por Imidazol e Tris, e Dimerização
title Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization
spellingShingle Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization
Chagas, Rafael Siqueira
β-glucosidase
β-glucosidase
Homodimer
homodímero
Imidazol
Imidazole
Inhibition
Inibição
Tris
Tris
title_short Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization
title_full Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization
title_fullStr Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization
title_full_unstemmed Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization
title_sort Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization
author Chagas, Rafael Siqueira
author_facet Chagas, Rafael Siqueira
author_role author
dc.contributor.none.fl_str_mv Marana, Sandro Roberto
dc.contributor.author.fl_str_mv Chagas, Rafael Siqueira
dc.subject.por.fl_str_mv β-glucosidase
β-glucosidase
Homodimer
homodímero
Imidazol
Imidazole
Inhibition
Inibição
Tris
Tris
topic β-glucosidase
β-glucosidase
Homodimer
homodímero
Imidazol
Imidazole
Inhibition
Inibição
Tris
Tris
description This work initially investigated the interaction and inhibition of two usual inhibitors, Imidazole and Tris, on the GH1 β-glucosidase from Spodoptera frugiperda (Sfβgly). In the first chapter, we demonstrated that imidazole reduces the activity of Sfβgly through a partial competitive inhibition mechanism, interacting with the enzyme\'s active site and decreasing substrate affinity. The second chapter shows that Tris acts as a mixed linear inhibitor, forming a nonproductive ESI complex. Both inhibitors can lead to underestimations of kinetic constants in the characterization of GH1 group enzymes. In the third chapter, using site-directed mutations in the enzyme\'s active site pocket, we developed a unified kinetic model that integrates six basic inhibition mechanisms (competitive, non-competitive, and mixed) into a single framework, proposing that these mechanisms are not isolated compartments but rather aspects of the same model. Finally, in the fourth chapter, we investigated the homodimerization of Sfβgly, highlighting that dimer stability is influenced by apolar residues and hydrogen bonds at the interface between the monomers. These findings not only enhance the understanding of oligomerization in GH1 β-glucosidases but also have significant implications for protein design and function.
publishDate 2024
dc.date.none.fl_str_mv 2024-10-23
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.teses.usp.br/teses/disponiveis/46/46131/tde-15042025-123421/
url https://www.teses.usp.br/teses/disponiveis/46/46131/tde-15042025-123421/
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv
dc.rights.driver.fl_str_mv Liberar o conteúdo para acesso público.
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Liberar o conteúdo para acesso público.
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.coverage.none.fl_str_mv
dc.publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
dc.source.none.fl_str_mv
reponame:Biblioteca Digital de Teses e Dissertações da USP
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Biblioteca Digital de Teses e Dissertações da USP
collection Biblioteca Digital de Teses e Dissertações da USP
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)
repository.mail.fl_str_mv virginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.br
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