Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization
| Ano de defesa: | 2024 |
|---|---|
| Autor(a) principal: | |
| Orientador(a): | |
| Banca de defesa: | |
| Tipo de documento: | Tese |
| Tipo de acesso: | Acesso aberto |
| Idioma: | eng |
| Instituição de defesa: |
Biblioteca Digitais de Teses e Dissertações da USP
|
| Programa de Pós-Graduação: |
Não Informado pela instituição
|
| Departamento: |
Não Informado pela instituição
|
| País: |
Não Informado pela instituição
|
| Palavras-chave em Português: | |
| Link de acesso: | https://www.teses.usp.br/teses/disponiveis/46/46131/tde-15042025-123421/ |
Resumo: | This work initially investigated the interaction and inhibition of two usual inhibitors, Imidazole and Tris, on the GH1 β-glucosidase from Spodoptera frugiperda (Sfβgly). In the first chapter, we demonstrated that imidazole reduces the activity of Sfβgly through a partial competitive inhibition mechanism, interacting with the enzyme\'s active site and decreasing substrate affinity. The second chapter shows that Tris acts as a mixed linear inhibitor, forming a nonproductive ESI complex. Both inhibitors can lead to underestimations of kinetic constants in the characterization of GH1 group enzymes. In the third chapter, using site-directed mutations in the enzyme\'s active site pocket, we developed a unified kinetic model that integrates six basic inhibition mechanisms (competitive, non-competitive, and mixed) into a single framework, proposing that these mechanisms are not isolated compartments but rather aspects of the same model. Finally, in the fourth chapter, we investigated the homodimerization of Sfβgly, highlighting that dimer stability is influenced by apolar residues and hydrogen bonds at the interface between the monomers. These findings not only enhance the understanding of oligomerization in GH1 β-glucosidases but also have significant implications for protein design and function. |
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Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and DimerizationEstudo com a β-Glucosidase de Spodoptera frugiperda: Inibição por Imidazol e Tris, e Dimerizaçãoβ-glucosidaseβ-glucosidaseHomodimerhomodímeroImidazolImidazoleInhibitionInibiçãoTrisTrisThis work initially investigated the interaction and inhibition of two usual inhibitors, Imidazole and Tris, on the GH1 β-glucosidase from Spodoptera frugiperda (Sfβgly). In the first chapter, we demonstrated that imidazole reduces the activity of Sfβgly through a partial competitive inhibition mechanism, interacting with the enzyme\'s active site and decreasing substrate affinity. The second chapter shows that Tris acts as a mixed linear inhibitor, forming a nonproductive ESI complex. Both inhibitors can lead to underestimations of kinetic constants in the characterization of GH1 group enzymes. In the third chapter, using site-directed mutations in the enzyme\'s active site pocket, we developed a unified kinetic model that integrates six basic inhibition mechanisms (competitive, non-competitive, and mixed) into a single framework, proposing that these mechanisms are not isolated compartments but rather aspects of the same model. Finally, in the fourth chapter, we investigated the homodimerization of Sfβgly, highlighting that dimer stability is influenced by apolar residues and hydrogen bonds at the interface between the monomers. These findings not only enhance the understanding of oligomerization in GH1 β-glucosidases but also have significant implications for protein design and function.Este trabalho investigou inicialmente a interação e inibição de dois inibidores comuns, imidazol e Tris, na β-glucosidase GH1 de Spodoptera frugiperda (Sfβgly). No primeiro capítulo, demonstramos que o imidazol reduz a atividade da Sfβgly por um mecanismo de inibição competitivo parcial, interagindo com o sítio ativo da enzima e diminuindo a afinidade pelo substrato. O segundo capítulo demonstra que o Tris atua como um inibidor misto linear, formando um complexo ESI que não é produtivo. Ambos os inibidores demonstram que sua presença pode causar subestimações nas constantes cinéticas na caracterização de enzimas do grupo GH1. No terceiro capítulo, a partir de mutações sítio-dirigidas no bolsão de sítio ativo da enzima, desenvolvemos um modelo cinético unificado que integra seis mecanismos básicos de inibição (competitiva, não competitiva e mista) em um único, propondo que esses mecanismos não são compartimentos isolados, mas aspectos de um mesmo modelo. Por fim, no quarto capítulo, investigamos a homodimerização de Sfβgly, evidenciando que a estabilidade do dímero é influenciada por resíduos apolares e ligações de hidrogênio na interface de contato entre os monômeros. Esses resultados não só ampliam a compreensão sobre a oligomerização de enzimas GH1 β-glucosidases, mas também têm implicações significativas para o design e a função de proteínas.Biblioteca Digitais de Teses e Dissertações da USPMarana, Sandro RobertoChagas, Rafael Siqueira2024-10-23info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/46/46131/tde-15042025-123421/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2025-05-05T20:54:02Zoai:teses.usp.br:tde-15042025-123421Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212025-05-05T20:54:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false |
| dc.title.none.fl_str_mv |
Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization Estudo com a β-Glucosidase de Spodoptera frugiperda: Inibição por Imidazol e Tris, e Dimerização |
| title |
Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization |
| spellingShingle |
Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization Chagas, Rafael Siqueira β-glucosidase β-glucosidase Homodimer homodímero Imidazol Imidazole Inhibition Inibição Tris Tris |
| title_short |
Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization |
| title_full |
Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization |
| title_fullStr |
Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization |
| title_full_unstemmed |
Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization |
| title_sort |
Study with β-Glucosidase from Spodoptera frugiperda: Inhibition by Imidazole and Tris, and Dimerization |
| author |
Chagas, Rafael Siqueira |
| author_facet |
Chagas, Rafael Siqueira |
| author_role |
author |
| dc.contributor.none.fl_str_mv |
Marana, Sandro Roberto |
| dc.contributor.author.fl_str_mv |
Chagas, Rafael Siqueira |
| dc.subject.por.fl_str_mv |
β-glucosidase β-glucosidase Homodimer homodímero Imidazol Imidazole Inhibition Inibição Tris Tris |
| topic |
β-glucosidase β-glucosidase Homodimer homodímero Imidazol Imidazole Inhibition Inibição Tris Tris |
| description |
This work initially investigated the interaction and inhibition of two usual inhibitors, Imidazole and Tris, on the GH1 β-glucosidase from Spodoptera frugiperda (Sfβgly). In the first chapter, we demonstrated that imidazole reduces the activity of Sfβgly through a partial competitive inhibition mechanism, interacting with the enzyme\'s active site and decreasing substrate affinity. The second chapter shows that Tris acts as a mixed linear inhibitor, forming a nonproductive ESI complex. Both inhibitors can lead to underestimations of kinetic constants in the characterization of GH1 group enzymes. In the third chapter, using site-directed mutations in the enzyme\'s active site pocket, we developed a unified kinetic model that integrates six basic inhibition mechanisms (competitive, non-competitive, and mixed) into a single framework, proposing that these mechanisms are not isolated compartments but rather aspects of the same model. Finally, in the fourth chapter, we investigated the homodimerization of Sfβgly, highlighting that dimer stability is influenced by apolar residues and hydrogen bonds at the interface between the monomers. These findings not only enhance the understanding of oligomerization in GH1 β-glucosidases but also have significant implications for protein design and function. |
| publishDate |
2024 |
| dc.date.none.fl_str_mv |
2024-10-23 |
| dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.driver.fl_str_mv |
info:eu-repo/semantics/doctoralThesis |
| format |
doctoralThesis |
| status_str |
publishedVersion |
| dc.identifier.uri.fl_str_mv |
https://www.teses.usp.br/teses/disponiveis/46/46131/tde-15042025-123421/ |
| url |
https://www.teses.usp.br/teses/disponiveis/46/46131/tde-15042025-123421/ |
| dc.language.iso.fl_str_mv |
eng |
| language |
eng |
| dc.relation.none.fl_str_mv |
|
| dc.rights.driver.fl_str_mv |
Liberar o conteúdo para acesso público. info:eu-repo/semantics/openAccess |
| rights_invalid_str_mv |
Liberar o conteúdo para acesso público. |
| eu_rights_str_mv |
openAccess |
| dc.format.none.fl_str_mv |
application/pdf |
| dc.coverage.none.fl_str_mv |
|
| dc.publisher.none.fl_str_mv |
Biblioteca Digitais de Teses e Dissertações da USP |
| publisher.none.fl_str_mv |
Biblioteca Digitais de Teses e Dissertações da USP |
| dc.source.none.fl_str_mv |
reponame:Biblioteca Digital de Teses e Dissertações da USP instname:Universidade de São Paulo (USP) instacron:USP |
| instname_str |
Universidade de São Paulo (USP) |
| instacron_str |
USP |
| institution |
USP |
| reponame_str |
Biblioteca Digital de Teses e Dissertações da USP |
| collection |
Biblioteca Digital de Teses e Dissertações da USP |
| repository.name.fl_str_mv |
Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP) |
| repository.mail.fl_str_mv |
virginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.br |
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1844786335528779776 |