Quantification of TP73 gene transcripts in acute promyelocytic leukemia and its impact on prognosis and treatment response

Detalhes bibliográficos
Ano de defesa: 2022
Autor(a) principal: Ortiz Rojas, César Alexander
Orientador(a): Não Informado pela instituição
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: eng
Instituição de defesa: Biblioteca Digitais de Teses e Dissertações da USP
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: https://www.teses.usp.br/teses/disponiveis/17/17154/tde-01122022-105546/
Resumo: Currently, acute promyelocytic leukemia (APL) is treated with all-trans retinoic acid (ATRA) associated with anthracyclines or arsenic trioxide (ATO). Unfortunately, some patients relapse or are refractory to treatment. Lucena-Araújo et al. (2015) demonstrated that high values of the ratio between the number of transcripts of the ΔNp73 and TAp73 isoforms of the TP73 gene are associated with a worse treatment outcome in patients with APL. Here we expand the knowledge about the association of p73 isoforms and prognosis in APL, exploring possible mechanisms in the response to ATRA and ATO. We evaluated the expression levels of TAp73, ΔNp73, TP73α and TP73β in public databases containing information on the transcriptome of patients with APL, and we also quantified the respective transcripts in samples at diagnosis of patients who were part of the IC-APL study. Compared with healthy bone marrow cells, we detected lower expression of TAp73 and higher expression of ΔNp73 and TP73β in APL samples. High ΔNp73 expression was associated with lower overall survival (OS) rates (Log rank, p = 0.023), but not disease-free survival. At 5 years of follow-up, patients with high expression of ΔNp73 had an OS rate of 77.8% (CI, 68.5%-88.4%) versus 96.6% (CI, 90%-100%). Through the ectopic expression of the genes of interest in NB4 and NB4-R2 cells (ATRA-sensitive and ATRA-resistant APL cell lines, respectively) we demonstrated that ΔNp73α and TAp73α are not important modulators of ATO-induced apoptosis. On the contrary, we detected that the expression of ΔNp73α blocked the increase in the expression of granulocytic differentiation markers CD11b and CD15 in NB4 cells treated with ATRA. Using a murine model, we observed that ectopic expression of ΔNp73α was associated with increased leukemic cell mass after ATRA treatment.Our analyzes on cell lines showed that ΔNp73α did not prevent the degradation of the PML-RARα oncoprotein and did not affect ATRA-induced nuclear body reorganization, but up-regulated the expression of the NANOG gene, a pluripotency transcription factor associated with cancer stem cell phenotype. We evaluated the proteome of our modified NB4 cells under ATRA-treated and untreated conditions. Differential analysis of protein abundance showed a greater number of proteins modulated by ΔNp73α than TAp73α in untreated NB4 cells. We found an upregulation of proteins involved in the RNA splicing process in NB4 cells with ectopic expression of ΔNp73α. ATRA treatment reversed regardless of the presence of p73 isoforms, suggesting that these pathways do not collaborate with ATRA resistance. Taken together, these results suggest that the ΔNp73α isoform reduces ATRA-induced myeloid differentiation using pathways other than PML-RARα degradation, and that the BMP4-ΔNp73α-NANOG axis could be involved in the regulation of this phenomenon.
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spelling Quantification of TP73 gene transcripts in acute promyelocytic leukemia and its impact on prognosis and treatment responseQuantificação dos transcritos do gene TP73 na leucemia promielocítica aguda e seu impacto no prognóstico e resposta à terapiaClinical outcomesIsoformas do p73p73 isoformsResistência à terapiaResultados clínicosTherapy resistanceCurrently, acute promyelocytic leukemia (APL) is treated with all-trans retinoic acid (ATRA) associated with anthracyclines or arsenic trioxide (ATO). Unfortunately, some patients relapse or are refractory to treatment. Lucena-Araújo et al. (2015) demonstrated that high values of the ratio between the number of transcripts of the ΔNp73 and TAp73 isoforms of the TP73 gene are associated with a worse treatment outcome in patients with APL. Here we expand the knowledge about the association of p73 isoforms and prognosis in APL, exploring possible mechanisms in the response to ATRA and ATO. We evaluated the expression levels of TAp73, ΔNp73, TP73α and TP73β in public databases containing information on the transcriptome of patients with APL, and we also quantified the respective transcripts in samples at diagnosis of patients who were part of the IC-APL study. Compared with healthy bone marrow cells, we detected lower expression of TAp73 and higher expression of ΔNp73 and TP73β in APL samples. High ΔNp73 expression was associated with lower overall survival (OS) rates (Log rank, p = 0.023), but not disease-free survival. At 5 years of follow-up, patients with high expression of ΔNp73 had an OS rate of 77.8% (CI, 68.5%-88.4%) versus 96.6% (CI, 90%-100%). Through the ectopic expression of the genes of interest in NB4 and NB4-R2 cells (ATRA-sensitive and ATRA-resistant APL cell lines, respectively) we demonstrated that ΔNp73α and TAp73α are not important modulators of ATO-induced apoptosis. On the contrary, we detected that the expression of ΔNp73α blocked the increase in the expression of granulocytic differentiation markers CD11b and CD15 in NB4 cells treated with ATRA. Using a murine model, we observed that ectopic expression of ΔNp73α was associated with increased leukemic cell mass after ATRA treatment.Our analyzes on cell lines showed that ΔNp73α did not prevent the degradation of the PML-RARα oncoprotein and did not affect ATRA-induced nuclear body reorganization, but up-regulated the expression of the NANOG gene, a pluripotency transcription factor associated with cancer stem cell phenotype. We evaluated the proteome of our modified NB4 cells under ATRA-treated and untreated conditions. Differential analysis of protein abundance showed a greater number of proteins modulated by ΔNp73α than TAp73α in untreated NB4 cells. We found an upregulation of proteins involved in the RNA splicing process in NB4 cells with ectopic expression of ΔNp73α. ATRA treatment reversed regardless of the presence of p73 isoforms, suggesting that these pathways do not collaborate with ATRA resistance. Taken together, these results suggest that the ΔNp73α isoform reduces ATRA-induced myeloid differentiation using pathways other than PML-RARα degradation, and that the BMP4-ΔNp73α-NANOG axis could be involved in the regulation of this phenomenon.Atualmente, a leucemia promielocítica aguda (LPA) é tratada com ácido all-trans retinóico (ATRA) associado à antraciclinas ou ao trióxido de arsênico (ATO). Infelizmente, alguns pacientes apresentam recaídas ou são refratários a esse tratamento. Lucena-Araújo et al. (2015) demonstraram que valores elevados da razão entre o número de transcritos das isoformas ΔNp73 e TAp73 do gene TP73 estão associados a um pior desfecho de tratamento em pacientes com LPA. Aqui ampliamos o conhecimento sobre a associação das isoformas p73 e o prognóstico na LPA, explorando seus possíveis mecanismos na resposta ao ATRA e ATO. Avaliamos os níveis de expressão de TAp73, ΔNp73, TP73α e TP73β em bases de dados públicas contendo informações sobre o transcriptoma de pacientes com LPA, e também quantificamos os respectivos transcritos em amostras ao diagnóstico de pacientes que fizeram parte do estudo IC-APL. Em comparação com células saudáveis da medula óssea, detectamos menor expressão de TAp73 e maior de ΔNp73 e TP73β nas amostras de LPA. A alta expressão de ΔNp73 foi associada a menores taxas de sobrevida global (SG) (Log rank, p = 0,023), mas não de sobrevida livre de doença. Aos 5 anos de acompanhamento, os pacientes com alta expressão de ΔNp73 tiveram taxa de SG de 77,8% (IC, 68,5%-88,4%) versus 96,6% (IC, 90%-100%). Através da expressão ectópica dos genes de interesse em células NB4 e NB4-R2 (linhagens de LPA sensível e resistente ao ATRA, respectivamente) demonstramos que ΔNp73α e TAp73α não são moduladores importantes da apoptose induzida pelo ATO. Ao contrário, detectamos que a expressão da ΔNp73α bloqueou o aumento da expressão dos marcadores de diferenciação granulocítica CD11b e CD15 em células NB4 tratadas com ATRA. Usando um modelo murino, observamos que a expressão ectópica de ΔNp73α foi associada a maior massa de células leucêmicas após o tratamento com ATRA. Nossas análises em linhagens celulares mostraram que ΔNp73α não impediu a degradação da oncoproteína PML-RARα e não afetou a reorganização dos corpúsculos nucleares induzida pelo ATRA, mas regulou positivamente a expressão do gene NANOG, um fator de transcrição de pluripotência associado à indução do fenótipo de células-tronco cancerígenas. Avaliamos o proteoma total de nossas células NB4 em condições tratadas e não tratadas com ATRA. A análise diferencial de abundância de proteínas mostrou um número maior de proteínas moduladas por ΔNp73α do que TAp73α em células NB4 não tratadas. Encontramos uma regulação positiva de proteínas envolvidas no processo de splicing de RNA em células NB4 com expressão ectópica de ΔNp73α, a qual foi revertida pelo tratamento com ATRA independentemente da presença das isoformas p73, sugerindo que essas vias não colaboram com a resistência ao ATRA. Em conjunto, esses resultados sugerem que a isoforma ΔNp73α reduz a diferenciação mielóide induzida pelo ATRA usando outras vias além da degradação de PML-RARα, e que o eixo BMP4-ΔNp73α-NANOG poderia estar envolvido na regulação desse fenômeno.Biblioteca Digitais de Teses e Dissertações da USPRego, Eduardo MagalhãesOrtiz Rojas, César Alexander2022-09-06info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/17/17154/tde-01122022-105546/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2024-09-06T13:00:02Zoai:teses.usp.br:tde-01122022-105546Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212024-09-06T13:00:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Quantification of TP73 gene transcripts in acute promyelocytic leukemia and its impact on prognosis and treatment response
Quantificação dos transcritos do gene TP73 na leucemia promielocítica aguda e seu impacto no prognóstico e resposta à terapia
title Quantification of TP73 gene transcripts in acute promyelocytic leukemia and its impact on prognosis and treatment response
spellingShingle Quantification of TP73 gene transcripts in acute promyelocytic leukemia and its impact on prognosis and treatment response
Ortiz Rojas, César Alexander
Clinical outcomes
Isoformas do p73
p73 isoforms
Resistência à terapia
Resultados clínicos
Therapy resistance
title_short Quantification of TP73 gene transcripts in acute promyelocytic leukemia and its impact on prognosis and treatment response
title_full Quantification of TP73 gene transcripts in acute promyelocytic leukemia and its impact on prognosis and treatment response
title_fullStr Quantification of TP73 gene transcripts in acute promyelocytic leukemia and its impact on prognosis and treatment response
title_full_unstemmed Quantification of TP73 gene transcripts in acute promyelocytic leukemia and its impact on prognosis and treatment response
title_sort Quantification of TP73 gene transcripts in acute promyelocytic leukemia and its impact on prognosis and treatment response
author Ortiz Rojas, César Alexander
author_facet Ortiz Rojas, César Alexander
author_role author
dc.contributor.none.fl_str_mv Rego, Eduardo Magalhães
dc.contributor.author.fl_str_mv Ortiz Rojas, César Alexander
dc.subject.por.fl_str_mv Clinical outcomes
Isoformas do p73
p73 isoforms
Resistência à terapia
Resultados clínicos
Therapy resistance
topic Clinical outcomes
Isoformas do p73
p73 isoforms
Resistência à terapia
Resultados clínicos
Therapy resistance
description Currently, acute promyelocytic leukemia (APL) is treated with all-trans retinoic acid (ATRA) associated with anthracyclines or arsenic trioxide (ATO). Unfortunately, some patients relapse or are refractory to treatment. Lucena-Araújo et al. (2015) demonstrated that high values of the ratio between the number of transcripts of the ΔNp73 and TAp73 isoforms of the TP73 gene are associated with a worse treatment outcome in patients with APL. Here we expand the knowledge about the association of p73 isoforms and prognosis in APL, exploring possible mechanisms in the response to ATRA and ATO. We evaluated the expression levels of TAp73, ΔNp73, TP73α and TP73β in public databases containing information on the transcriptome of patients with APL, and we also quantified the respective transcripts in samples at diagnosis of patients who were part of the IC-APL study. Compared with healthy bone marrow cells, we detected lower expression of TAp73 and higher expression of ΔNp73 and TP73β in APL samples. High ΔNp73 expression was associated with lower overall survival (OS) rates (Log rank, p = 0.023), but not disease-free survival. At 5 years of follow-up, patients with high expression of ΔNp73 had an OS rate of 77.8% (CI, 68.5%-88.4%) versus 96.6% (CI, 90%-100%). Through the ectopic expression of the genes of interest in NB4 and NB4-R2 cells (ATRA-sensitive and ATRA-resistant APL cell lines, respectively) we demonstrated that ΔNp73α and TAp73α are not important modulators of ATO-induced apoptosis. On the contrary, we detected that the expression of ΔNp73α blocked the increase in the expression of granulocytic differentiation markers CD11b and CD15 in NB4 cells treated with ATRA. Using a murine model, we observed that ectopic expression of ΔNp73α was associated with increased leukemic cell mass after ATRA treatment.Our analyzes on cell lines showed that ΔNp73α did not prevent the degradation of the PML-RARα oncoprotein and did not affect ATRA-induced nuclear body reorganization, but up-regulated the expression of the NANOG gene, a pluripotency transcription factor associated with cancer stem cell phenotype. We evaluated the proteome of our modified NB4 cells under ATRA-treated and untreated conditions. Differential analysis of protein abundance showed a greater number of proteins modulated by ΔNp73α than TAp73α in untreated NB4 cells. We found an upregulation of proteins involved in the RNA splicing process in NB4 cells with ectopic expression of ΔNp73α. ATRA treatment reversed regardless of the presence of p73 isoforms, suggesting that these pathways do not collaborate with ATRA resistance. Taken together, these results suggest that the ΔNp73α isoform reduces ATRA-induced myeloid differentiation using pathways other than PML-RARα degradation, and that the BMP4-ΔNp73α-NANOG axis could be involved in the regulation of this phenomenon.
publishDate 2022
dc.date.none.fl_str_mv 2022-09-06
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
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dc.identifier.uri.fl_str_mv https://www.teses.usp.br/teses/disponiveis/17/17154/tde-01122022-105546/
url https://www.teses.usp.br/teses/disponiveis/17/17154/tde-01122022-105546/
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv
dc.rights.driver.fl_str_mv Liberar o conteúdo para acesso público.
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Liberar o conteúdo para acesso público.
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
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dc.publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
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reponame:Biblioteca Digital de Teses e Dissertações da USP
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Biblioteca Digital de Teses e Dissertações da USP
collection Biblioteca Digital de Teses e Dissertações da USP
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)
repository.mail.fl_str_mv virginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.br
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