Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica

Detalhes bibliográficos
Ano de defesa: 2007
Autor(a) principal: Perin, Liamara lattes
Orientador(a): Reis, Veronica Massena lattes
Banca de defesa: Baldani, Jos? Ivo lattes
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal Rural do Rio de Janeiro
Programa de Pós-Graduação: Programa de P?s-Gradua??o em Agronomia - Ci?ncia do Solo
Departamento: Instituto de Agronomia
País: Brasil
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: https://tede.ufrrj.br/jspui/handle/tede/304
Resumo: The sugarcane crop in Brazil occupies almost six million hectares and it is economically important for the generation of jobs and energy production. Among the Poaceas species, it is the crop that receives more contributions from the biological nitrogen fixation, however until this moment it is unknown what organisms are responsible for the best results observed. Innumerable genuses of diazotrophic bacteria were found in association with sugarcane, among them the genus Burkholderia. However little is known about this genus in association with sugarcane. The objective of this study was to isolate and to characterize diazotrophic Burkholderia bacteria in association with sugarcane, and to describe a new species of diazotrophic Burkholderia bacteria. For that, samples of plants were collected in four crop areas, in different Brazilian states, for counting and isolating the bacteria community using the culture medias LGI and JMV. The isolates were characterized physiological, morphologically and molecularly. Sixty-four Burkholderia diazotrophic isolates were gotten that presented versatile metabolism, and the majority differing from the analyzed species patterns. Only five isolates were identified by the ARDRA technique, two belonging to B. tropica species and three to B. unamae. A big group, with 32 isolates, presented the same restriction profile by the ARDRA technique and differed from the analyzed species. The sequencing of the 16S rDNA region of two of these isolates showed that they don t belong to the already described species. This group, from sugarcane plants together with similar maize and pineapple isolates, was described as a new species named B. silvatlantica. The characterization of this new Burkholderia specie was confirmed by the hybridization DNA: DNA technique, presenting only 30% of similarity with the closest species, and the sequencing of the 16S rDNA region. B. Silvatlantica fixed nitrogen in microaerophilic conditions, and it had no capacity of inorganic phosphate solubilization, it did not produce vegetal hormones and had no nodulation capacity in leguminous. These results confirmed that Burkholderia is a rich genus in diazotrophics species and colonize different habitats.
id UFRRJ-1_c373144b3f37d4c4ad6fe414e72640ad
oai_identifier_str oai:localhost:tede/304
network_acronym_str UFRRJ-1
network_name_str Biblioteca Digital de Teses e Dissertações da UFRRJ
repository_id_str
spelling Reis, Veronica MassenaCPF:63105284753http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4784229T0Ara?jo, Jean Luiz Sim?es deCPF:72800046449http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4793441D6Baldani, Jos? IvoCPF:53886445887http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4788890Y3CPF:94688320906http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4769047J0Perin, Liamara2016-04-26T19:39:29Z2007-05-252007-02-15PERIN, Liamara. Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica. 2007. 103 f. Tese (Doutorado em Agronomia, Ci?ncia do Solo) - Instituto de Agronomia, Universidade Federal Rural do Rio de Janeiro, Serop?dica - Rj, 2007.https://tede.ufrrj.br/jspui/handle/tede/304The sugarcane crop in Brazil occupies almost six million hectares and it is economically important for the generation of jobs and energy production. Among the Poaceas species, it is the crop that receives more contributions from the biological nitrogen fixation, however until this moment it is unknown what organisms are responsible for the best results observed. Innumerable genuses of diazotrophic bacteria were found in association with sugarcane, among them the genus Burkholderia. However little is known about this genus in association with sugarcane. The objective of this study was to isolate and to characterize diazotrophic Burkholderia bacteria in association with sugarcane, and to describe a new species of diazotrophic Burkholderia bacteria. For that, samples of plants were collected in four crop areas, in different Brazilian states, for counting and isolating the bacteria community using the culture medias LGI and JMV. The isolates were characterized physiological, morphologically and molecularly. Sixty-four Burkholderia diazotrophic isolates were gotten that presented versatile metabolism, and the majority differing from the analyzed species patterns. Only five isolates were identified by the ARDRA technique, two belonging to B. tropica species and three to B. unamae. A big group, with 32 isolates, presented the same restriction profile by the ARDRA technique and differed from the analyzed species. The sequencing of the 16S rDNA region of two of these isolates showed that they don t belong to the already described species. This group, from sugarcane plants together with similar maize and pineapple isolates, was described as a new species named B. silvatlantica. The characterization of this new Burkholderia specie was confirmed by the hybridization DNA: DNA technique, presenting only 30% of similarity with the closest species, and the sequencing of the 16S rDNA region. B. Silvatlantica fixed nitrogen in microaerophilic conditions, and it had no capacity of inorganic phosphate solubilization, it did not produce vegetal hormones and had no nodulation capacity in leguminous. These results confirmed that Burkholderia is a rich genus in diazotrophics species and colonize different habitats.A cultura da cana-de-a??car no Brasil ocupa mais de seis milh?es de hectares sendo importante economicamente pela gera??o de empregos e bastante promissora para a produ??o de energia. Dentre as Poaceas (gram?neas), ? a cultura que mais recebe contribui??es da fixa??o biol?gica de nitrog?nio, por?m ainda n?o se sabe ou n?o se conhece qual ou quais organismos s?o respons?veis pelos melhores resultados observados. In?meros g?neros de bact?rias diazotr?ficas foram encontrados em associa??o com cana-de-a??car, dentre eles o g?nero Burkholderia, at? o momento pouco estudado em associa??o com esta cultura. O objetivo deste estudo foi isolar e caracterizar bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descrever uma nova esp?cie de bact?ria diazotr?fica do g?nero Burkholderia. Para tal, foram coletadas amostras de plantas em canaviais de quatro estados brasileiros para contagem e isolamento da comunidade de bact?rias utilizando os meios de cultura LGI e JMV. Os isolados foram caracterizados fisiologicamente, morfologicamente e molecularmente. Foram obtidos 64 isolados diazotr?ficos do g?nero Burkholderia, que apresentaram metabolismo vers?til e diferiram dos padr?es das esp?cies analisadas. Apenas cinco isolados foram identificados pela t?cnica de ARDRA, dois pertenceram a esp?cie B. tropica e tr?s a B. unamae. Um grande grupo, com 32 isolados, apresentou mesmo perfil de restri??o pela t?cnica de ARDRA e diferiu das esp?cies analisadas. O sequ?nciamento da regi?o 16S rDNA de dois destes isolados mostrou que eles n?o pertencem ?s esp?cies j? descritas. Este grupo obtido de plantas de cana-de-a??car, juntamente com isolados similares, obtidos de milho e abacaxi, foi descrito como uma nova esp?cie de nome B. silvatlantica. A nova esp?cie de Burkholderia foi confirmada pelos experimentos de hibridiza??o DNA:DNA, com apenas 30% de similaridade com a esp?cie mais pr?xima. B. silvatlantica fixou nitrog?nio em condi??es microaerof?licas, n?o apresentou capacidade de solubiliza??o de fosfato inorg?nico, n?o produziu horm?nios vegetais e n?o apresentou capacidade de nodula??o em leguminosas. Estes resultados confirmaram que o g?nero Burkholderia ? rico em esp?cies diazotr?ficas e est?o presentes em diferentes habitats.Made available in DSpace on 2016-04-26T19:39:29Z (GMT). No. of bitstreams: 1 2007 - Liamara Perin.pdf: 5126010 bytes, checksum: 0973e83f604e8d397ec95ef00c19da99 (MD5) Previous issue date: 2007-02-15Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gicoapplication/pdfhttps://tede.ufrrj.br/retrieve/13540/2007%20-%20Liamara%20Perin.pdf.jpghttps://tede.ufrrj.br/retrieve/18002/2007%20-%20Liamara%20Perin.pdf.jpghttps://tede.ufrrj.br/retrieve/24338/2007%20-%20Liamara%20Perin.pdf.jpghttps://tede.ufrrj.br/retrieve/30745/2007%20-%20Liamara%20Perin.pdf.jpghttps://tede.ufrrj.br/retrieve/37105/2007%20-%20Liamara%20Perin.pdf.jpghttps://tede.ufrrj.br/retrieve/43455/2007%20-%20Liamara%20Perin.pdf.jpghttps://tede.ufrrj.br/retrieve/49851/2007%20-%20Liamara%20Perin.pdf.jpghttps://tede.ufrrj.br/retrieve/56330/2007%20-%20Liamara%20Perin.pdf.jpgporUniversidade Federal Rural do Rio de JaneiroPrograma de P?s-Gradua??o em Agronomia - Ci?ncia do SoloUFRRJBrasilInstituto de Agronomiafixa??o biol?gica de nitrog?niopoaceacaracteriza??o de bact?riasbiological nitrogen fixationbacteria characterizationAgronomiaEstudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlanticaCommunity study of the of Burkholderia diazotrophic bacteria in association with sugarcane and description of Burkholderia silvatlanticainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisinfo:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UFRRJinstname:Universidade Federal Rural do Rio de Janeiro (UFRRJ)instacron:UFRRJTHUMBNAIL2007 - Liamara Perin.pdf.jpg2007 - Liamara Perin.pdf.jpgimage/jpeg1943http://localhost:8080/tede/bitstream/tede/304/17/2007+-+Liamara+Perin.pdf.jpgcc73c4c239a4c332d642ba1e7c7a9fb2MD517TEXT2007 - Liamara Perin.pdf.txt2007 - Liamara Perin.pdf.txttext/plain262184http://localhost:8080/tede/bitstream/tede/304/16/2007+-+Liamara+Perin.pdf.txt1c81331309618788ff10c0ee983afcd2MD516ORIGINAL2007 - Liamara Perin.pdf2007 - Liamara Perin.pdfapplication/pdf5126080http://localhost:8080/tede/bitstream/tede/304/1/2007+-+Liamara+Perin.pdf379970319e7f15da994150c3974a703aMD51tede/3042020-05-19 02:42:50.8oai:localhost:tede/304Biblioteca Digital de Teses e Dissertaçõeshttps://tede.ufrrj.br/PUBhttps://tede.ufrrj.br/oai/requestbibliot@ufrrj.br||bibliot@ufrrj.bropendoar:2020-05-19T05:42:50Biblioteca Digital de Teses e Dissertações da UFRRJ - Universidade Federal Rural do Rio de Janeiro (UFRRJ)false
dc.title.por.fl_str_mv Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica
dc.title.alternative.eng.fl_str_mv Community study of the of Burkholderia diazotrophic bacteria in association with sugarcane and description of Burkholderia silvatlantica
title Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica
spellingShingle Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica
Perin, Liamara
fixa??o biol?gica de nitrog?nio
poacea
caracteriza??o de bact?rias
biological nitrogen fixation
bacteria characterization
Agronomia
title_short Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica
title_full Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica
title_fullStr Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica
title_full_unstemmed Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica
title_sort Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica
author Perin, Liamara
author_facet Perin, Liamara
author_role author
dc.contributor.advisor1.fl_str_mv Reis, Veronica Massena
dc.contributor.advisor1ID.fl_str_mv CPF:63105284753
dc.contributor.advisor1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4784229T0
dc.contributor.advisor-co1.fl_str_mv Ara?jo, Jean Luiz Sim?es de
dc.contributor.advisor-co1ID.fl_str_mv CPF:72800046449
dc.contributor.advisor-co1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4793441D6
dc.contributor.referee1.fl_str_mv Baldani, Jos? Ivo
dc.contributor.referee1ID.fl_str_mv CPF:53886445887
dc.contributor.referee1Lattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4788890Y3
dc.contributor.authorID.fl_str_mv CPF:94688320906
dc.contributor.authorLattes.fl_str_mv http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4769047J0
dc.contributor.author.fl_str_mv Perin, Liamara
contributor_str_mv Reis, Veronica Massena
Ara?jo, Jean Luiz Sim?es de
Baldani, Jos? Ivo
dc.subject.por.fl_str_mv fixa??o biol?gica de nitrog?nio
poacea
caracteriza??o de bact?rias
topic fixa??o biol?gica de nitrog?nio
poacea
caracteriza??o de bact?rias
biological nitrogen fixation
bacteria characterization
Agronomia
dc.subject.eng.fl_str_mv biological nitrogen fixation
bacteria characterization
dc.subject.cnpq.fl_str_mv Agronomia
description The sugarcane crop in Brazil occupies almost six million hectares and it is economically important for the generation of jobs and energy production. Among the Poaceas species, it is the crop that receives more contributions from the biological nitrogen fixation, however until this moment it is unknown what organisms are responsible for the best results observed. Innumerable genuses of diazotrophic bacteria were found in association with sugarcane, among them the genus Burkholderia. However little is known about this genus in association with sugarcane. The objective of this study was to isolate and to characterize diazotrophic Burkholderia bacteria in association with sugarcane, and to describe a new species of diazotrophic Burkholderia bacteria. For that, samples of plants were collected in four crop areas, in different Brazilian states, for counting and isolating the bacteria community using the culture medias LGI and JMV. The isolates were characterized physiological, morphologically and molecularly. Sixty-four Burkholderia diazotrophic isolates were gotten that presented versatile metabolism, and the majority differing from the analyzed species patterns. Only five isolates were identified by the ARDRA technique, two belonging to B. tropica species and three to B. unamae. A big group, with 32 isolates, presented the same restriction profile by the ARDRA technique and differed from the analyzed species. The sequencing of the 16S rDNA region of two of these isolates showed that they don t belong to the already described species. This group, from sugarcane plants together with similar maize and pineapple isolates, was described as a new species named B. silvatlantica. The characterization of this new Burkholderia specie was confirmed by the hybridization DNA: DNA technique, presenting only 30% of similarity with the closest species, and the sequencing of the 16S rDNA region. B. Silvatlantica fixed nitrogen in microaerophilic conditions, and it had no capacity of inorganic phosphate solubilization, it did not produce vegetal hormones and had no nodulation capacity in leguminous. These results confirmed that Burkholderia is a rich genus in diazotrophics species and colonize different habitats.
publishDate 2007
dc.date.available.fl_str_mv 2007-05-25
dc.date.issued.fl_str_mv 2007-02-15
dc.date.accessioned.fl_str_mv 2016-04-26T19:39:29Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv PERIN, Liamara. Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica. 2007. 103 f. Tese (Doutorado em Agronomia, Ci?ncia do Solo) - Instituto de Agronomia, Universidade Federal Rural do Rio de Janeiro, Serop?dica - Rj, 2007.
dc.identifier.uri.fl_str_mv https://tede.ufrrj.br/jspui/handle/tede/304
identifier_str_mv PERIN, Liamara. Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica. 2007. 103 f. Tese (Doutorado em Agronomia, Ci?ncia do Solo) - Instituto de Agronomia, Universidade Federal Rural do Rio de Janeiro, Serop?dica - Rj, 2007.
url https://tede.ufrrj.br/jspui/handle/tede/304
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal Rural do Rio de Janeiro
dc.publisher.program.fl_str_mv Programa de P?s-Gradua??o em Agronomia - Ci?ncia do Solo
dc.publisher.initials.fl_str_mv UFRRJ
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Instituto de Agronomia
publisher.none.fl_str_mv Universidade Federal Rural do Rio de Janeiro
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações da UFRRJ
instname:Universidade Federal Rural do Rio de Janeiro (UFRRJ)
instacron:UFRRJ
instname_str Universidade Federal Rural do Rio de Janeiro (UFRRJ)
instacron_str UFRRJ
institution UFRRJ
reponame_str Biblioteca Digital de Teses e Dissertações da UFRRJ
collection Biblioteca Digital de Teses e Dissertações da UFRRJ
bitstream.url.fl_str_mv http://localhost:8080/tede/bitstream/tede/304/17/2007+-+Liamara+Perin.pdf.jpg
http://localhost:8080/tede/bitstream/tede/304/16/2007+-+Liamara+Perin.pdf.txt
http://localhost:8080/tede/bitstream/tede/304/1/2007+-+Liamara+Perin.pdf
bitstream.checksum.fl_str_mv cc73c4c239a4c332d642ba1e7c7a9fb2
1c81331309618788ff10c0ee983afcd2
379970319e7f15da994150c3974a703a
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da UFRRJ - Universidade Federal Rural do Rio de Janeiro (UFRRJ)
repository.mail.fl_str_mv bibliot@ufrrj.br||bibliot@ufrrj.br
_version_ 1797220254585192448