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An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites

Detalhes bibliográficos
Ano de defesa: 2011
Autor(a) principal: Gama, Renata Nat?lia C?ndido de Souza lattes
Orientador(a): Santos, Carlos Ant?nio Fernandes
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Estadual de Feira de Santana
Programa de Pós-Graduação: Mestrado Acad?mico em Recursos Gen?ticos Vegetais
Departamento: DEPARTAMENTO DE CI?NCIAS BIOL?GICAS
País: Brasil
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: http://tede2.uefs.br:8080/handle/tede/1127
Resumo: The objectives of this work were to establish allelic patterns and to estimate genetic distances in 17 watermelon cultivars and one accession of Citrullus colocynthis, based on microsatellite marker, in order to generate a reference database to support the plant variety protection, as well as to guide improvement programs and genetic resources of this species. For visualization of the genetic similarity, the dendrogram UPGMA generated by the matrix of distances of the coefficient of Jacquard was used, based on 32 alleles of ten microsatellite loci. The total DNA was extracted by the CTAB 2x method, and PCR products were analyzed in denaturing polyacrylamide 6% gels, stained with silver nitrate. The number of base pairs was estimated by the method of inverse mobility, based on known size products regression. Among the 36 tested microsatellites primers only ten presented polymorphic amplification of easy interpretation. The cultivars presented a similarity coefficient between 34 and 100%, which reflected the high genetic variability. The 32 alleles were not enough to distinguish all 17 watermelon cultivars, with ?Sugar Baby? and ?Omaru Yamato?; ?Charleston Gray? and ?Sunshade?, ?Crimson Sweet? and ?Nova Crimson? presenting a 100% of similarity. Two groups were observed at the cut point of 0.42 of similarity, with Citrullus colocynthis, positioned as an out group. One watermelon group was formed predominately by cultivars derived from Crimson and another group formed by cultivars of different types as ?Sugar Baby?, ?Charleston Gray? and ?P?rola?.
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spelling Santos, Carlos Ant?nio Fernandes2256262154906747408403http://lattes.cnpq.br/4276329736513349Gama, Renata Nat?lia C?ndido de Souza2020-05-15T23:00:32Z2011-08-01GAMA, Renata Nat?lia C?ndido de Souza. An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites. 2011. 72 f. Disserta??o (Mestrado Acad?mico em Recursos Gen?ticos Vegetais)- Universidade Estadual de Feira de Santana, Feira de Santana, 2011.http://tede2.uefs.br:8080/handle/tede/1127The objectives of this work were to establish allelic patterns and to estimate genetic distances in 17 watermelon cultivars and one accession of Citrullus colocynthis, based on microsatellite marker, in order to generate a reference database to support the plant variety protection, as well as to guide improvement programs and genetic resources of this species. For visualization of the genetic similarity, the dendrogram UPGMA generated by the matrix of distances of the coefficient of Jacquard was used, based on 32 alleles of ten microsatellite loci. The total DNA was extracted by the CTAB 2x method, and PCR products were analyzed in denaturing polyacrylamide 6% gels, stained with silver nitrate. The number of base pairs was estimated by the method of inverse mobility, based on known size products regression. Among the 36 tested microsatellites primers only ten presented polymorphic amplification of easy interpretation. The cultivars presented a similarity coefficient between 34 and 100%, which reflected the high genetic variability. The 32 alleles were not enough to distinguish all 17 watermelon cultivars, with ?Sugar Baby? and ?Omaru Yamato?; ?Charleston Gray? and ?Sunshade?, ?Crimson Sweet? and ?Nova Crimson? presenting a 100% of similarity. Two groups were observed at the cut point of 0.42 of similarity, with Citrullus colocynthis, positioned as an out group. One watermelon group was formed predominately by cultivars derived from Crimson and another group formed by cultivars of different types as ?Sugar Baby?, ?Charleston Gray? and ?P?rola?.O presente trabalho teve como objetivos o estabelecimento de padr?es al?licos e estimativas das dist?ncias gen?ticas para 17 cultivares de melancia e um acesso de Citrullus colocinthis, baseados em marcadores microssat?lites, de forma a gerar um banco de dados de refer?ncia e apoio ? prote??o de cultivares e eventuais disputas comerciais, bem como orientar programas de melhoramento e recursos gen?ticos da esp?cie. Para visualiza??o da similaridade gen?tica, utilizou-se o dendrograma UPGMA gerado da matriz de dist?ncias do coeficiente de Jaccard, com base em 32 alelos de dez locos microssat?lites. O DNA total foi extra?do pelo m?todo CTAB 2x e os produtos de PCR foram analisados em g?is de poliacrilamida desnaturante 6% e corados com nitrato de prata. O n?mero de pares de bases foi estimado pelo m?todo da mobilidade inversa, com base na regress?o de produtos de tamanho conhecido. Dos 36 pares de ?primers? microssat?lites utilizados apenas dez apresentaram amplifica??es polim?rficas de f?cil interpreta??o. As cultivares apresentaram coeficiente de similaridade entre 34 e 100%, o que reflete a alta variabilidade gen?tica das cultivares analisadas. Os 32 alelos n?o foram suficientes para distinguir as cultivares de melancia, ?Sugar Baby? e ?Omaru Yamato?, ?Charleston Gray? e ?Sunshade?, ?Crimson Sweet? e ?Nova Crimson? que apresentaram 100% de similaridade. Dois grupos foram observados entre as cultivares de melancia, no ponto de corte de 0,42 de similaridade, com Citrullus colocynthis, posicionando-se fora desses grupos. Um dos grupos foi formado predominantemente por cultivares derivadas de ?Crimson Sweet? e outro grupo com cultivares de diferentes tipos, como ?Sugar Baby?, ?Charleston Gray? e ?P?rola?.Submitted by Ricardo Cedraz Duque Moliterno (ricardo.moliterno@uefs.br) on 2020-05-15T23:00:32Z No. of bitstreams: 1 DISSERTA??O.pdf: 3013869 bytes, checksum: 63505fef39bf25050aaab7751ea5f87f (MD5)Made available in DSpace on 2020-05-15T23:00:32Z (GMT). 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dc.title.por.fl_str_mv An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites
title An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites
spellingShingle An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites
Gama, Renata Nat?lia C?ndido de Souza
Citrullus lanatus
Microssat?lites
Diverg?ncia
Prote??o de cultivares
Dendrograma
Microsatellite
Divergence
Plant variety protection
Dendrogram
CIENCIAS BIOLOGICAS
title_short An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites
title_full An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites
title_fullStr An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites
title_full_unstemmed An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites
title_sort An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites
author Gama, Renata Nat?lia C?ndido de Souza
author_facet Gama, Renata Nat?lia C?ndido de Souza
author_role author
dc.contributor.advisor1.fl_str_mv Santos, Carlos Ant?nio Fernandes
dc.contributor.advisor1ID.fl_str_mv 22562621549
dc.contributor.authorID.fl_str_mv 06747408403
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/4276329736513349
dc.contributor.author.fl_str_mv Gama, Renata Nat?lia C?ndido de Souza
contributor_str_mv Santos, Carlos Ant?nio Fernandes
dc.subject.por.fl_str_mv Citrullus lanatus
Microssat?lites
Diverg?ncia
Prote??o de cultivares
Dendrograma
topic Citrullus lanatus
Microssat?lites
Diverg?ncia
Prote??o de cultivares
Dendrograma
Microsatellite
Divergence
Plant variety protection
Dendrogram
CIENCIAS BIOLOGICAS
dc.subject.eng.fl_str_mv Microsatellite
Divergence
Plant variety protection
Dendrogram
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS
description The objectives of this work were to establish allelic patterns and to estimate genetic distances in 17 watermelon cultivars and one accession of Citrullus colocynthis, based on microsatellite marker, in order to generate a reference database to support the plant variety protection, as well as to guide improvement programs and genetic resources of this species. For visualization of the genetic similarity, the dendrogram UPGMA generated by the matrix of distances of the coefficient of Jacquard was used, based on 32 alleles of ten microsatellite loci. The total DNA was extracted by the CTAB 2x method, and PCR products were analyzed in denaturing polyacrylamide 6% gels, stained with silver nitrate. The number of base pairs was estimated by the method of inverse mobility, based on known size products regression. Among the 36 tested microsatellites primers only ten presented polymorphic amplification of easy interpretation. The cultivars presented a similarity coefficient between 34 and 100%, which reflected the high genetic variability. The 32 alleles were not enough to distinguish all 17 watermelon cultivars, with ?Sugar Baby? and ?Omaru Yamato?; ?Charleston Gray? and ?Sunshade?, ?Crimson Sweet? and ?Nova Crimson? presenting a 100% of similarity. Two groups were observed at the cut point of 0.42 of similarity, with Citrullus colocynthis, positioned as an out group. One watermelon group was formed predominately by cultivars derived from Crimson and another group formed by cultivars of different types as ?Sugar Baby?, ?Charleston Gray? and ?P?rola?.
publishDate 2011
dc.date.issued.fl_str_mv 2011-08-01
dc.date.accessioned.fl_str_mv 2020-05-15T23:00:32Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv GAMA, Renata Nat?lia C?ndido de Souza. An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites. 2011. 72 f. Disserta??o (Mestrado Acad?mico em Recursos Gen?ticos Vegetais)- Universidade Estadual de Feira de Santana, Feira de Santana, 2011.
dc.identifier.uri.fl_str_mv http://tede2.uefs.br:8080/handle/tede/1127
identifier_str_mv GAMA, Renata Nat?lia C?ndido de Souza. An?lise molecular de germoplasma de melancia com base em marcadores microssat?lites. 2011. 72 f. Disserta??o (Mestrado Acad?mico em Recursos Gen?ticos Vegetais)- Universidade Estadual de Feira de Santana, Feira de Santana, 2011.
url http://tede2.uefs.br:8080/handle/tede/1127
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language por
dc.relation.program.fl_str_mv 8146646481622241874
dc.relation.confidence.fl_str_mv 600
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dc.relation.department.fl_str_mv 5026123383450589282
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dc.relation.sponsorship.fl_str_mv 3590462550136975366
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dc.publisher.none.fl_str_mv Universidade Estadual de Feira de Santana
dc.publisher.program.fl_str_mv Mestrado Acad?mico em Recursos Gen?ticos Vegetais
dc.publisher.initials.fl_str_mv UEFS
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv DEPARTAMENTO DE CI?NCIAS BIOL?GICAS
publisher.none.fl_str_mv Universidade Estadual de Feira de Santana
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