Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR.

Detalhes bibliográficos
Ano de defesa: 2014
Autor(a) principal: Souza, Diego Pereira de
Orientador(a): Ramos, Márcio Viana
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Não Informado pela instituição
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: http://www.repositorio.ufc.br/handle/riufc/64795
Resumo: Several plant species produce a fluid with milky aspect called latex, which is synthesized and stored under pressure in a system of channels formed by specialized cells termed laticifers. Latex is an emulsion of many kind of substances suspended in aqueous media. Many studies have suggested that latex compounds are involved in plant defense. Here, we describe the purification, cDNA cloning and molecular modeling of an osmotin (CgOsm) from Crytostegia grandiflora latex. Osmotin of C. grandiflora, named CgOsm, was purified by using a simple protocol consisting cation exchange chromatography on MonoS column coupled to FPLC system. The protein purity was confirmed by mass spectrometry. Total RNA was isolated from young leaves of C. grandiflora by Concert (Invitrogen) method. The yield and purity of RNA was determined spectrophotometrically and the quality of RNA was tested on 1% agarose gel. The first strand of cDNA was synthesized by the process of reverse transcription standard. The second strand of cDNA and then subsequent amplification of CgOsm cDNA was performed using forward primer (based on first seven N-terminal amino acid of CgOsm) and oligo dT as reverse primer. The PCR products were subcloned into pGEM-T vector and then introduced into Escherichia coli cloning host TOP10F'. The recombinant plasmids were purified from transformed bacterial cell and submitted to DNA sequencing. The 3D model of CgOsm was constructed using SWISS-MODEL program by homology modeling using X-ray crystal structure of act d 2 (PDB ID: 4BCT). Model quality was evaluated by MolProbity server. The computational analysis of the deduced sequence of CgOsm shown that it is an protein of apparent molecular weight about 21.966 Da and isoelectric point of 8.1. The complete structure of CgOsm is composed of three domains: domain I consists of 11 beta-strands, arranged in the shape of a beta-sandwich, domain II consists of several loops extending from domain I and stabilized by four disulfide bonds and domain III consists of a small loop with two disulfide bonds. MolProbity analysis revealed that 96.5% residues were present in most favored region. In silico analysis revealed that the structural segments of CgOsm show similarity with folding adiponectin, a human protein hormone synthesized by adipocytes whose action has implications in obesity, type II diabetes, cardiovascular disease and atherosclerosis. Tests have demonstrated that modeling CgOsm could interact with the adiponectin receptor, fact that leads to the hypothesis that CgOsm could mimic activities of human adiponectin. Thus, the results described in this study show a perspective to be explored about the pharmacological potential of this protein
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spelling Souza, Diego Pereira deRamos, Márcio Viana2022-04-01T21:51:13Z2022-04-01T21:51:13Z2014SOUZA, Diego Pereira de. Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR. 2014. 112 f. Tese (Doutorado em Bioquímica) - Universidade Federal do Ceará, Fortaleza, 2014.http://www.repositorio.ufc.br/handle/riufc/64795Several plant species produce a fluid with milky aspect called latex, which is synthesized and stored under pressure in a system of channels formed by specialized cells termed laticifers. Latex is an emulsion of many kind of substances suspended in aqueous media. Many studies have suggested that latex compounds are involved in plant defense. Here, we describe the purification, cDNA cloning and molecular modeling of an osmotin (CgOsm) from Crytostegia grandiflora latex. Osmotin of C. grandiflora, named CgOsm, was purified by using a simple protocol consisting cation exchange chromatography on MonoS column coupled to FPLC system. The protein purity was confirmed by mass spectrometry. Total RNA was isolated from young leaves of C. grandiflora by Concert (Invitrogen) method. The yield and purity of RNA was determined spectrophotometrically and the quality of RNA was tested on 1% agarose gel. The first strand of cDNA was synthesized by the process of reverse transcription standard. The second strand of cDNA and then subsequent amplification of CgOsm cDNA was performed using forward primer (based on first seven N-terminal amino acid of CgOsm) and oligo dT as reverse primer. The PCR products were subcloned into pGEM-T vector and then introduced into Escherichia coli cloning host TOP10F'. The recombinant plasmids were purified from transformed bacterial cell and submitted to DNA sequencing. The 3D model of CgOsm was constructed using SWISS-MODEL program by homology modeling using X-ray crystal structure of act d 2 (PDB ID: 4BCT). Model quality was evaluated by MolProbity server. The computational analysis of the deduced sequence of CgOsm shown that it is an protein of apparent molecular weight about 21.966 Da and isoelectric point of 8.1. The complete structure of CgOsm is composed of three domains: domain I consists of 11 beta-strands, arranged in the shape of a beta-sandwich, domain II consists of several loops extending from domain I and stabilized by four disulfide bonds and domain III consists of a small loop with two disulfide bonds. MolProbity analysis revealed that 96.5% residues were present in most favored region. In silico analysis revealed that the structural segments of CgOsm show similarity with folding adiponectin, a human protein hormone synthesized by adipocytes whose action has implications in obesity, type II diabetes, cardiovascular disease and atherosclerosis. Tests have demonstrated that modeling CgOsm could interact with the adiponectin receptor, fact that leads to the hypothesis that CgOsm could mimic activities of human adiponectin. Thus, the results described in this study show a perspective to be explored about the pharmacological potential of this proteinDiversas plantas produzem um fluido de aspecto leitoso denominado de látex, que é sintetizado e armazenado sob pressão em sistemas de canais formados por células especializadas, os laticíferos. A mais atrativa e estudada hipótese sobre a relevância biológica dos laticíferos sugere que estes participem ativamente da defesa vegetal. Partindo desta Tese, aspectos bioquímicos e moleculares foram estudados no látex da planta Cryptostegia grandiflora. É descrita a purificação e caracterização molecular de uma proteína do látex cuja identificação sugeriu ser uma osmotina e por isto foi designada como CgOsm. CgOsm foi purificada por meio de cromatografia de troca catiônica em coluna MonoS acoplado ao sistema de FPLC. A pureza e a identificação da proteína foi avaliada por SDS-PAGE, sequência NH2-terminal e espectrometria de massas. O RNA mensageiro total de C. grandiflora foi isolado, purificado e usado para a síntese da primeira fita do cDNA através de PCR. A segunda fita de cDNA foi amplificada utilizando iniciadores degenerados e o produto com aproximadamente 600 pb foi subclonado no vetor pGEN-T easy e introduzido em Escherichia coli eletrocompetentes. Os plasmídeos recombinantes foram purificados e sequenciados. A sequência de aminoácidos deduzida revelou alta identidade com osmotinas de Heliathus annuus e Piper columbrinum. O modelo da estrutura tridimensional da CgOsm deduzida foi realizada por modelagem por homologia utilizando a estrutura da act d2 (PDB: 4BCT) resolvida por raio X. CgOsm é composta por três domínios: domínio I consiste de 11 folhas beta, formando uma conformação do tipo beta sanduiche; domínio II é formado por diversos loops que se estendem até o domínio I e o domínio III consiste de um pequeno loop. Analise in silico revelou que a CgOsm possui seguimentos estruturais com estrutura similar a adiponectina, um hormônio proteico humano sintetizado pelos adipócitos cuja ação tem implicações na obesidade, diabetes do tipo II, doenças cardiovasculares e ateroscleroses. Ensaios de modelagem demonstraram que CgOsm poderia interagir com o receptor de adiponectina favoravelmente, fato que conduz a hipótese de que CgOsm poderia mimetizar atividades da adiponectina humana. Assim, os resultados descritos neste trabalho apontam uma perspectiva a ser explorada sobre os potenciais farmacológicos desta proteína.LátexModelagem molecularFitoquímicosCaracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR.Molecular characterization and structural correlations with human adiponectin of a purified protein from Cryptostegia grandiflora R. BR. latexinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisporreponame:Repositório Institucional da Universidade Federal do Ceará (UFC)instname:Universidade Federal do Ceará (UFC)instacron:UFCinfo:eu-repo/semantics/openAccessLICENSElicense.txtlicense.txttext/plain; charset=utf-82158http://repositorio.ufc.br/bitstream/riufc/64795/2/license.txte63c6ed4faa81e8b90d2fac75971a7d6MD52ORIGINAL2014_tese_dpsouza.pdf2014_tese_dpsouza.pdfapplication/pdf2621766http://repositorio.ufc.br/bitstream/riufc/64795/1/2014_tese_dpsouza.pdfd5311031037b69ce3304955e0fad94d4MD51riufc/647952022-04-01 18:51:13.391oai:repositorio.ufc.br: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Repositório InstitucionalPUBhttp://www.repositorio.ufc.br/ri-oai/requestbu@ufc.br || repositorio@ufc.bropendoar:2022-04-01T21:51:13Repositório Institucional da Universidade Federal do Ceará (UFC) - Universidade Federal do Ceará (UFC)false
dc.title.pt_BR.fl_str_mv Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR.
dc.title.en.pt_BR.fl_str_mv Molecular characterization and structural correlations with human adiponectin of a purified protein from Cryptostegia grandiflora R. BR. latex
title Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR.
spellingShingle Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR.
Souza, Diego Pereira de
Látex
Modelagem molecular
Fitoquímicos
title_short Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR.
title_full Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR.
title_fullStr Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR.
title_full_unstemmed Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR.
title_sort Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR.
author Souza, Diego Pereira de
author_facet Souza, Diego Pereira de
author_role author
dc.contributor.author.fl_str_mv Souza, Diego Pereira de
dc.contributor.advisor1.fl_str_mv Ramos, Márcio Viana
contributor_str_mv Ramos, Márcio Viana
dc.subject.por.fl_str_mv Látex
Modelagem molecular
Fitoquímicos
topic Látex
Modelagem molecular
Fitoquímicos
description Several plant species produce a fluid with milky aspect called latex, which is synthesized and stored under pressure in a system of channels formed by specialized cells termed laticifers. Latex is an emulsion of many kind of substances suspended in aqueous media. Many studies have suggested that latex compounds are involved in plant defense. Here, we describe the purification, cDNA cloning and molecular modeling of an osmotin (CgOsm) from Crytostegia grandiflora latex. Osmotin of C. grandiflora, named CgOsm, was purified by using a simple protocol consisting cation exchange chromatography on MonoS column coupled to FPLC system. The protein purity was confirmed by mass spectrometry. Total RNA was isolated from young leaves of C. grandiflora by Concert (Invitrogen) method. The yield and purity of RNA was determined spectrophotometrically and the quality of RNA was tested on 1% agarose gel. The first strand of cDNA was synthesized by the process of reverse transcription standard. The second strand of cDNA and then subsequent amplification of CgOsm cDNA was performed using forward primer (based on first seven N-terminal amino acid of CgOsm) and oligo dT as reverse primer. The PCR products were subcloned into pGEM-T vector and then introduced into Escherichia coli cloning host TOP10F'. The recombinant plasmids were purified from transformed bacterial cell and submitted to DNA sequencing. The 3D model of CgOsm was constructed using SWISS-MODEL program by homology modeling using X-ray crystal structure of act d 2 (PDB ID: 4BCT). Model quality was evaluated by MolProbity server. The computational analysis of the deduced sequence of CgOsm shown that it is an protein of apparent molecular weight about 21.966 Da and isoelectric point of 8.1. The complete structure of CgOsm is composed of three domains: domain I consists of 11 beta-strands, arranged in the shape of a beta-sandwich, domain II consists of several loops extending from domain I and stabilized by four disulfide bonds and domain III consists of a small loop with two disulfide bonds. MolProbity analysis revealed that 96.5% residues were present in most favored region. In silico analysis revealed that the structural segments of CgOsm show similarity with folding adiponectin, a human protein hormone synthesized by adipocytes whose action has implications in obesity, type II diabetes, cardiovascular disease and atherosclerosis. Tests have demonstrated that modeling CgOsm could interact with the adiponectin receptor, fact that leads to the hypothesis that CgOsm could mimic activities of human adiponectin. Thus, the results described in this study show a perspective to be explored about the pharmacological potential of this protein
publishDate 2014
dc.date.issued.fl_str_mv 2014
dc.date.accessioned.fl_str_mv 2022-04-01T21:51:13Z
dc.date.available.fl_str_mv 2022-04-01T21:51:13Z
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dc.identifier.citation.fl_str_mv SOUZA, Diego Pereira de. Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR. 2014. 112 f. Tese (Doutorado em Bioquímica) - Universidade Federal do Ceará, Fortaleza, 2014.
dc.identifier.uri.fl_str_mv http://www.repositorio.ufc.br/handle/riufc/64795
identifier_str_mv SOUZA, Diego Pereira de. Caracterização molecular e correlações estruturais com adiponectina humana de uma proteína purificada do látex de Cryptostegia grandiflora r. BR. 2014. 112 f. Tese (Doutorado em Bioquímica) - Universidade Federal do Ceará, Fortaleza, 2014.
url http://www.repositorio.ufc.br/handle/riufc/64795
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