Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina
| Ano de defesa: | 2016 |
|---|---|
| Autor(a) principal: | |
| Orientador(a): | |
| Banca de defesa: | |
| Tipo de documento: | Dissertação |
| Tipo de acesso: | Acesso aberto |
| Idioma: | por |
| Instituição de defesa: |
Não Informado pela instituição
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| Programa de Pós-Graduação: |
Não Informado pela instituição
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| Departamento: |
Não Informado pela instituição
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| País: |
Não Informado pela instituição
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| Palavras-chave em Português: | |
| Link de acesso: | http://www.repositorio.ufc.br/handle/riufc/23924 |
Resumo: | Pathogenesis-related proteins (PRs) are expressed in response to pathogenic infections and abiotic stresses. PR-5 family includes proteins related to thaumatin and osmotin. In this study, the presence of an ~22 kDa osmotin-like protein in Plumeria rubra latex was confirmed by western blot assay using anti-CpOsm antibodies, as described by Freitas et al., 2015. The cDNA fragment encoding this osmotin (PrOsm) was cloned, and then the predicted protein was characterized and modeled in silico. The amplification of the cDNA fragment encoding the PrOsm was carried out by RTPCR. The PCR product was ligated into pGEM-T Easy vector and cloned in E. coli DH5α cells. Clones obtained were submitted to sequencing. The computational analysis of the deduced sequences of P. rubra osmotins (PrOsms) showed that the proteins have an apparent molecular weight about 22 kDa and contain 16 cysteine residues involved in 8 disulfide bonds, stabilizing the protein structure. The PrOsms structure exhibits a typical architecture of TLPs, composed by three domains. Mapping of the electrostatic potentials showed that PrOsms contain, on its surface, an acidic cleft, between domains I and II. The PrOsms were evaluated for their ability to interact with human adiponectin receptors (AdipoR1 and AdipoR2) in silico. Molecular docking suggests that PrOsms are able to interact with adiponectin receptors, similarly to AdipoQ, being potential therapeutic targets for the control of obesity-related diseases, including type 2 diabetes and metabolic syndrome. |
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Nishi, Beatriz CarolineFreitas, Cleverson Diniz Teixeira de2017-07-10T17:50:18Z2017-07-10T17:50:18Z2016NISHI, Beatriz Caroline. Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina. 2016. 111 f. Dissertação (Mestrado em Bioquímica)- Universidade Federal do Ceará, Fortaleza, 2016.http://www.repositorio.ufc.br/handle/riufc/23924Pathogenesis-related proteins (PRs) are expressed in response to pathogenic infections and abiotic stresses. PR-5 family includes proteins related to thaumatin and osmotin. In this study, the presence of an ~22 kDa osmotin-like protein in Plumeria rubra latex was confirmed by western blot assay using anti-CpOsm antibodies, as described by Freitas et al., 2015. The cDNA fragment encoding this osmotin (PrOsm) was cloned, and then the predicted protein was characterized and modeled in silico. The amplification of the cDNA fragment encoding the PrOsm was carried out by RTPCR. The PCR product was ligated into pGEM-T Easy vector and cloned in E. coli DH5α cells. Clones obtained were submitted to sequencing. The computational analysis of the deduced sequences of P. rubra osmotins (PrOsms) showed that the proteins have an apparent molecular weight about 22 kDa and contain 16 cysteine residues involved in 8 disulfide bonds, stabilizing the protein structure. The PrOsms structure exhibits a typical architecture of TLPs, composed by three domains. Mapping of the electrostatic potentials showed that PrOsms contain, on its surface, an acidic cleft, between domains I and II. The PrOsms were evaluated for their ability to interact with human adiponectin receptors (AdipoR1 and AdipoR2) in silico. Molecular docking suggests that PrOsms are able to interact with adiponectin receptors, similarly to AdipoQ, being potential therapeutic targets for the control of obesity-related diseases, including type 2 diabetes and metabolic syndrome.Proteínas relacionadas à patogênese (PR proteínas) são expressas em resposta a infecções por patógenos e estresses abióticos. A família PR-5 inclui proteínas relacionadas à taumatina e a osmotina. Neste estudo, a presença de uma proteína do tipo osmotina de aproximadamente 22 kDa, no látex de Plumeria rubra, foi confirmada por meio de ensaios de western blot utilizando anticorpos anti-CpOsm (osmotina de C. procera), como descrito por Freitas e colaboradores (2015). O fragmento de cDNA codificando esta osmotina (PrOsm) foi clonado, a proteína predita foi caracterizada e sua estrutura foi modelada in silico. A amplificação do fragmento de cDNA codificante da PrOsm foi realizado por meio de RT-PCR. O fragmento amplificado, de aproximadamente 600 pb, foi ligado a um vetor de clonagem (pGEM-T Easy). Células de E. coli DH5α eletrocompetentes foram então transformadas com os plasmídeos recombinantes (pGEM-T Easy::PrOsm) e os insertos foram sequenciados. As sequências obtidas foram submetidas a análises in silico. As osmotinas de P. rubra (PrOsms) são proteínas de aproximadamente 22 kDa, apresentando 16 resíduos de cisteína, envolvidos na formação de 8 ligações dissulfeto. A estrutura das PrOsms exibe uma arquitetura típica de TLPs, composta por três domínios. O mapeamento dos potenciais eletrostáticos mostrou que as PrOsms apresentam, em sua superfície, uma fenda de natureza acídica, localizada entre os domínios I e II. A capacidade potencial das PrOsms de interagir com os receptores de adiponectina humana (AdipoR1 e AdipoR2) foi predita in silico. O docking molecular sugere que as PrOsms são capazes de interagir com os receptores de adiponectina, de forma similar a AdipoQ, sendo portanto potenciais alvos terapêuticos para o controle de doenças relacionadas à obesidade, incluindo diabetes tipo 2 e síndrome metabólica.PR proteínaModelagem comparativaLátexOsmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectinaOsmotin from Plumeria rubra: identification, molecular cloning, tridimensional modeling and its possible mimetic effect for Adiponectininfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisporreponame:Repositório Institucional da Universidade Federal do Ceará (UFC)instname:Universidade Federal do Ceará (UFC)instacron:UFCinfo:eu-repo/semantics/openAccessORIGINAL2016_dis_bcnishi.pdf2016_dis_bcnishi.pdfapplication/pdf6198229http://repositorio.ufc.br/bitstream/riufc/23924/1/2016_dis_bcnishi.pdf907d1b766e98e2a4ef1484116216b945MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://repositorio.ufc.br/bitstream/riufc/23924/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52riufc/239242019-04-12 19:42:38.01oai:repositorio.ufc.br:riufc/23924Tk9URTogUExBQ0UgWU9VUiBPV04gTElDRU5TRSBIRVJFClRoaXMgc2FtcGxlIGxpY2Vuc2UgaXMgcHJvdmlkZWQgZm9yIGluZm9ybWF0aW9uYWwgcHVycG9zZXMgb25seS4KCk5PTi1FWENMVVNJVkUgRElTVFJJQlVUSU9OIExJQ0VOU0UKCkJ5IHNpZ25pbmcgYW5kIHN1Ym1pdHRpbmcgdGhpcyBsaWNlbnNlLCB5b3UgKHRoZSBhdXRob3Iocykgb3IgY29weXJpZ2h0Cm93bmVyKSBncmFudHMgdG8gRFNwYWNlIFVuaXZlcnNpdHkgKERTVSkgdGhlIG5vbi1leGNsdXNpdmUgcmlnaHQgdG8gcmVwcm9kdWNlLAp0cmFuc2xhdGUgKGFzIGRlZmluZWQgYmVsb3cpLCBhbmQvb3IgZGlzdHJpYnV0ZSB5b3VyIHN1Ym1pc3Npb24gKGluY2x1ZGluZwp0aGUgYWJzdHJhY3QpIHdvcmxkd2lkZSBpbiBwcmludCBhbmQgZWxlY3Ryb25pYyBmb3JtYXQgYW5kIGluIGFueSBtZWRpdW0sCmluY2x1ZGluZyBidXQgbm90IGxpbWl0ZWQgdG8gYXVkaW8gb3IgdmlkZW8uCgpZb3UgYWdyZWUgdGhhdCBEU1UgbWF5LCB3aXRob3V0IGNoYW5naW5nIHRoZSBjb250ZW50LCB0cmFuc2xhdGUgdGhlCnN1Ym1pc3Npb24gdG8gYW55IG1lZGl1bSBvciBmb3JtYXQgZm9yIHRoZSBwdXJwb3NlIG9mIHByZXNlcnZhdGlvbi4KCllvdSBhbHNvIGFncmVlIHRoYXQgRFNVIG1heSBrZWVwIG1vcmUgdGhhbiBvbmUgY29weSBvZiB0aGlzIHN1Ym1pc3Npb24gZm9yCnB1cnBvc2VzIG9mIHNlY3VyaXR5LCBiYWNrLXVwIGFuZCBwcmVzZXJ2YXRpb24uCgpZb3UgcmVwcmVzZW50IHRoYXQgdGhlIHN1Ym1pc3Npb24gaXMgeW91ciBvcmlnaW5hbCB3b3JrLCBhbmQgdGhhdCB5b3UgaGF2ZQp0aGUgcmlnaHQgdG8gZ3JhbnQgdGhlIHJpZ2h0cyBjb250YWluZWQgaW4gdGhpcyBsaWNlbnNlLiBZb3UgYWxzbyByZXByZXNlbnQKdGhhdCB5b3VyIHN1Ym1pc3Npb24gZG9lcyBub3QsIHRvIHRoZSBiZXN0IG9mIHlvdXIga25vd2xlZGdlLCBpbmZyaW5nZSB1cG9uCmFueW9uZSdzIGNvcHlyaWdodC4KCklmIHRoZSBzdWJtaXNzaW9uIGNvbnRhaW5zIG1hdGVyaWFsIGZvciB3aGljaCB5b3UgZG8gbm90IGhvbGQgY29weXJpZ2h0LAp5b3UgcmVwcmVzZW50IHRoYXQgeW91IGhhdmUgb2J0YWluZWQgdGhlIHVucmVzdHJpY3RlZCBwZXJtaXNzaW9uIG9mIHRoZQpjb3B5cmlnaHQgb3duZXIgdG8gZ3JhbnQgRFNVIHRoZSByaWdodHMgcmVxdWlyZWQgYnkgdGhpcyBsaWNlbnNlLCBhbmQgdGhhdApzdWNoIHRoaXJkLXBhcnR5IG93bmVkIG1hdGVyaWFsIGlzIGNsZWFybHkgaWRlbnRpZmllZCBhbmQgYWNrbm93bGVkZ2VkCndpdGhpbiB0aGUgdGV4dCBvciBjb250ZW50IG9mIHRoZSBzdWJtaXNzaW9uLgoKSUYgVEhFIFNVQk1JU1NJT04gSVMgQkFTRUQgVVBPTiBXT1JLIFRIQVQgSEFTIEJFRU4gU1BPTlNPUkVEIE9SIFNVUFBPUlRFRApCWSBBTiBBR0VOQ1kgT1IgT1JHQU5JWkFUSU9OIE9USEVSIFRIQU4gRFNVLCBZT1UgUkVQUkVTRU5UIFRIQVQgWU9VIEhBVkUKRlVMRklMTEVEIEFOWSBSSUdIVCBPRiBSRVZJRVcgT1IgT1RIRVIgT0JMSUdBVElPTlMgUkVRVUlSRUQgQlkgU1VDSApDT05UUkFDVCBPUiBBR1JFRU1FTlQuCgpEU1Ugd2lsbCBjbGVhcmx5IGlkZW50aWZ5IHlvdXIgbmFtZShzKSBhcyB0aGUgYXV0aG9yKHMpIG9yIG93bmVyKHMpIG9mIHRoZQpzdWJtaXNzaW9uLCBhbmQgd2lsbCBub3QgbWFrZSBhbnkgYWx0ZXJhdGlvbiwgb3RoZXIgdGhhbiBhcyBhbGxvd2VkIGJ5IHRoaXMKbGljZW5zZSwgdG8geW91ciBzdWJtaXNzaW9uLgo=Repositório InstitucionalPUBhttp://www.repositorio.ufc.br/ri-oai/requestbu@ufc.br || repositorio@ufc.bropendoar:2019-04-12T22:42:38Repositório Institucional da Universidade Federal do Ceará (UFC) - Universidade Federal do Ceará (UFC)false |
| dc.title.pt_BR.fl_str_mv |
Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina |
| dc.title.en.pt_BR.fl_str_mv |
Osmotin from Plumeria rubra: identification, molecular cloning, tridimensional modeling and its possible mimetic effect for Adiponectin |
| title |
Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina |
| spellingShingle |
Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina Nishi, Beatriz Caroline PR proteína Modelagem comparativa Látex |
| title_short |
Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina |
| title_full |
Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina |
| title_fullStr |
Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina |
| title_full_unstemmed |
Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina |
| title_sort |
Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina |
| author |
Nishi, Beatriz Caroline |
| author_facet |
Nishi, Beatriz Caroline |
| author_role |
author |
| dc.contributor.author.fl_str_mv |
Nishi, Beatriz Caroline |
| dc.contributor.advisor1.fl_str_mv |
Freitas, Cleverson Diniz Teixeira de |
| contributor_str_mv |
Freitas, Cleverson Diniz Teixeira de |
| dc.subject.por.fl_str_mv |
PR proteína Modelagem comparativa Látex |
| topic |
PR proteína Modelagem comparativa Látex |
| description |
Pathogenesis-related proteins (PRs) are expressed in response to pathogenic infections and abiotic stresses. PR-5 family includes proteins related to thaumatin and osmotin. In this study, the presence of an ~22 kDa osmotin-like protein in Plumeria rubra latex was confirmed by western blot assay using anti-CpOsm antibodies, as described by Freitas et al., 2015. The cDNA fragment encoding this osmotin (PrOsm) was cloned, and then the predicted protein was characterized and modeled in silico. The amplification of the cDNA fragment encoding the PrOsm was carried out by RTPCR. The PCR product was ligated into pGEM-T Easy vector and cloned in E. coli DH5α cells. Clones obtained were submitted to sequencing. The computational analysis of the deduced sequences of P. rubra osmotins (PrOsms) showed that the proteins have an apparent molecular weight about 22 kDa and contain 16 cysteine residues involved in 8 disulfide bonds, stabilizing the protein structure. The PrOsms structure exhibits a typical architecture of TLPs, composed by three domains. Mapping of the electrostatic potentials showed that PrOsms contain, on its surface, an acidic cleft, between domains I and II. The PrOsms were evaluated for their ability to interact with human adiponectin receptors (AdipoR1 and AdipoR2) in silico. Molecular docking suggests that PrOsms are able to interact with adiponectin receptors, similarly to AdipoQ, being potential therapeutic targets for the control of obesity-related diseases, including type 2 diabetes and metabolic syndrome. |
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2016 |
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2016 |
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2017-07-10T17:50:18Z |
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2017-07-10T17:50:18Z |
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info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/masterThesis |
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masterThesis |
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NISHI, Beatriz Caroline. Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina. 2016. 111 f. Dissertação (Mestrado em Bioquímica)- Universidade Federal do Ceará, Fortaleza, 2016. |
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http://www.repositorio.ufc.br/handle/riufc/23924 |
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NISHI, Beatriz Caroline. Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina. 2016. 111 f. Dissertação (Mestrado em Bioquímica)- Universidade Federal do Ceará, Fortaleza, 2016. |
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