Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal

Detalhes bibliográficos
Ano de defesa: 2019
Autor(a) principal: Silva, Camila Meirelles de Souza
Orientador(a): Lima Júnior, Roberto César Pereira
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Não Informado pela instituição
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: http://www.repositorio.ufc.br/handle/riufc/43228
Resumo: Colorectal cancer is a disease with high incidence and mortality and represents one of the great challenges for public health. It is high mortality rate is, in part, related to the diagnosis of advanced disease. This has encouraged the search for new tools for early detection of colorectal cancer that are more effective, less invasive and that can be performed on a large scale. Under this perspective, the analysis of the serum expression of MicroRNAs (miRNAs) is presented as an alternative, since they are highly stable in the blood and are frequently altered in several pathologies, especially in cancer. The miRNAs are a class of small RNAs that act as transcriptional regulators affecting several pathophysiological processes including the developmental stages of colorectal cancer. In this context, the present study was conducted to identify a differential expression profile of circulating miRNAs as a possible noninvasive method for early diagnosis of colorectal cancer. For this, we used the methodology of large scale analysis to identify the expression profile of plasma miRNAs in subjects carefully divided into non-cancerous group (healthy volunteers, patients with hyperplastic polyp and adenoma) vs. cancer group (colorectal cancer and colorectal cancer with metastasis). Subsequently the differentially expressed miRNAs were validated by qRT-PCR. The discriminant power of the miRNAs between the groups was evaluated by ROC curve and multivariate model and the prediction of targets and pathways involved was analyzed using the bioinformatics tools. Were identified four miRNAs (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p and hsa-miR-542-5p) overexpressed in the cancer group when compared to non-cancer group, being the hsa-miR-28-3p the strongest diagnostic marker (ROC 0.7841 [0.6890-0.8873]) followed by hsa-miR-542-5p (ROC 0.7174 [0.6167-0.8181]). Association between two miRNAs also showed high discriminant power between groups cancer vs. non-cancer with the following associations: hsa-miR-28-3p and hsa-miR-542-5p (ROC 0.7363 [0.6670-0.8056]); hsa-miR-28-3p and hsa-miR-106a-5p (0.7324 [0.6597-0.8051]) and (hsa-miR-28-3p and hsa-let-7e-5p (ROC 0.7264 [0.6555-0.7974]), and association of three and four miRNAs: hsa-miR-106a-5p, hsa-let-7e-5p and hsa-miR-28-3p (ROC 0.7102 [0.6506-0.7676]) and hsa-miR-106a-5p, hsa-let-7e-5p, hsa-miR-28-3p and hsa-miR-542-5p (ROC 0.7053 [0.6543-0.7564]). Additionally, the prediction of targets and signaling pathways in silico showed that hsa-let-7e-5p, hsa-miR-106a-5p, and hsa-miR-28-3p regulate enriched genes in pathways associated with cancer. Therefore, In the present study it was demonstrated that the evaluation of serum expression of hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p and hsa-miR-542-5p can be used as a miRNAs signature for the less-invasive and early diagnostic of colorectal cancer.
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spelling Silva, Camila Meirelles de SouzaLima Júnior, Roberto César Pereira2019-07-01T12:57:07Z2019-07-01T12:57:07Z2019-06-26SILVA, C. M. S. Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal. 2019. 95 f. Tese (Doutorado em Farmacologia) – Faculdade de Medicina, Universidade Federal do Ceará, Fortaleza, 2019.http://www.repositorio.ufc.br/handle/riufc/43228Colorectal cancer is a disease with high incidence and mortality and represents one of the great challenges for public health. It is high mortality rate is, in part, related to the diagnosis of advanced disease. This has encouraged the search for new tools for early detection of colorectal cancer that are more effective, less invasive and that can be performed on a large scale. Under this perspective, the analysis of the serum expression of MicroRNAs (miRNAs) is presented as an alternative, since they are highly stable in the blood and are frequently altered in several pathologies, especially in cancer. The miRNAs are a class of small RNAs that act as transcriptional regulators affecting several pathophysiological processes including the developmental stages of colorectal cancer. In this context, the present study was conducted to identify a differential expression profile of circulating miRNAs as a possible noninvasive method for early diagnosis of colorectal cancer. For this, we used the methodology of large scale analysis to identify the expression profile of plasma miRNAs in subjects carefully divided into non-cancerous group (healthy volunteers, patients with hyperplastic polyp and adenoma) vs. cancer group (colorectal cancer and colorectal cancer with metastasis). Subsequently the differentially expressed miRNAs were validated by qRT-PCR. The discriminant power of the miRNAs between the groups was evaluated by ROC curve and multivariate model and the prediction of targets and pathways involved was analyzed using the bioinformatics tools. Were identified four miRNAs (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p and hsa-miR-542-5p) overexpressed in the cancer group when compared to non-cancer group, being the hsa-miR-28-3p the strongest diagnostic marker (ROC 0.7841 [0.6890-0.8873]) followed by hsa-miR-542-5p (ROC 0.7174 [0.6167-0.8181]). Association between two miRNAs also showed high discriminant power between groups cancer vs. non-cancer with the following associations: hsa-miR-28-3p and hsa-miR-542-5p (ROC 0.7363 [0.6670-0.8056]); hsa-miR-28-3p and hsa-miR-106a-5p (0.7324 [0.6597-0.8051]) and (hsa-miR-28-3p and hsa-let-7e-5p (ROC 0.7264 [0.6555-0.7974]), and association of three and four miRNAs: hsa-miR-106a-5p, hsa-let-7e-5p and hsa-miR-28-3p (ROC 0.7102 [0.6506-0.7676]) and hsa-miR-106a-5p, hsa-let-7e-5p, hsa-miR-28-3p and hsa-miR-542-5p (ROC 0.7053 [0.6543-0.7564]). Additionally, the prediction of targets and signaling pathways in silico showed that hsa-let-7e-5p, hsa-miR-106a-5p, and hsa-miR-28-3p regulate enriched genes in pathways associated with cancer. Therefore, In the present study it was demonstrated that the evaluation of serum expression of hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p and hsa-miR-542-5p can be used as a miRNAs signature for the less-invasive and early diagnostic of colorectal cancer.O câncer colorretal é uma doença com alta incidência e mortalidade e representa um dos grandes desafios para a saúde pública. O alto índice de mortalidade está, em parte, relacionado ao diagnóstico da doença em estágio avançado. Esse fato tem instigado a busca por ferramentas mais efetivas para detecção precoce de câncer colorretal, pouco invasivas e que possam ser realizadas em larga-escala. Sob essa perpectiva, a análise da expressão sérica de microRNAs (miRNAs) apresenta-se como uma alternativa, uma vez que, são altamente estáveis no sangue e estão frequentemente alterados em diversas patologias, especialmente no câncer. Os miRNAs são uma classe de pequenos RNAs que atuam como reguladores pós-transcricionais afetando vários processos fisiopatológicos inclusive as fases de desenvolvimento do câncer colorretal. Nesse contexto, o presente estudo foi conduzido a fim de identificar um perfil de expressão diferencial de miRNAs circulantes como possível método pouco invasivo para diagnóstico precoce de câncer colorretal. Para alcançar esse objetivo utilizamos a metodologia de análise em larga escala para identificar o perfil de expressão de miRNAs plasmáticos em indivíduos divididos criteriosamente em grupo não-câncer (voluntários saudáveis, pacientes com pólipo hiperplásico e adenoma) vs. grupo câncer (pacientes com câncer colorretal inicial e câncer colorretal com metástase). Posteriormente, os miRNAs diferencialmente expressos foram validados por qRT-PCR. O poder discriminante dos miRNAs entre os grupos foi avaliado por curva ROC e modelo multivariado, e a predição de alvos e possíveis vias de sinalização envolvidas foram analisadas usando predição in silico através de ferramentas de bioinformática. Foram identificados quatro miRNAs (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) superexpressos no grupo câncer quando comparado ao grupo não câncer, sendo o hsa-miR-28-3p o melhor marcador diagnóstico encontrado (ROC 0,7841 [0,6890 - 0,8793]), seguido do hsa-miR-542-5p (ROC 0,7174 [0,6167 - 0,8181]). A associação entre dois miRNAs também apresentou alto poder discriminante entre os grupos câncer vs. não-câncer com as seguintes associações: hsa-miR-28-3p e hsa-miR-542-5p (ROC 0,7363 [0,6670 - 0,8056]); hsa-miR-28-3p e hsa-miR-106a-5p (0,7324 [0,6597 - 0,8051]) e (hsa-miR-28-3p e hsa-let-7e-5p (ROC 0,7264 [0,6555 - 0,7974]); e associação de três e quatro miRNAs: hsa-miR-106a-5p, hsa-let-7e-5p e hsa-miR-28-3p (ROC 0,7102 [0,6506 - 0,7697]) e hsa-miR-106a-5p, hsa-let-7e-5p, hsa-miR-28-3p e hsa-miR-542-5p (ROC 0,7053 [0,6543 - 0,7564]). Além disso, a previsão de alvos e vias de sinalização in silico mostrou que os miRNAs hsa-let-7e-5p, hsa-miR-106a-5p, e hsa-miR-28-3p regulam genes enriquecidos em vias associadas ao câncer. Dessa forma, no presente estudo foi demonstrado que a avaliação da expressão sérica do hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p poderia ser utilizada como uma assinatura de miRNAs para o diagnóstico precoce, pouco invasivo de câncer colorretal.BiomarcadoresMicroRNAsNeoplasias ColorretaisAssinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretalSignature of circulating microRNAs (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) as promising biomarkers for early diagnosis of colorectal cancerinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisporreponame:Repositório Institucional da Universidade Federal do Ceará (UFC)instname:Universidade Federal do Ceará (UFC)instacron:UFCinfo:eu-repo/semantics/openAccessORIGINAL2019_tese_cmssilva.pdf2019_tese_cmssilva.pdfapplication/pdf3661051http://repositorio.ufc.br/bitstream/riufc/43228/1/2019_tese_cmssilva.pdf2a31d9086e0ab6dcfa4801e1abb40309MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://repositorio.ufc.br/bitstream/riufc/43228/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52riufc/432282019-10-23 11:23:00.657oai:repositorio.ufc.br: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Repositório InstitucionalPUBhttp://www.repositorio.ufc.br/ri-oai/requestbu@ufc.br || repositorio@ufc.bropendoar:2019-10-23T14:23Repositório Institucional da Universidade Federal do Ceará (UFC) - Universidade Federal do Ceará (UFC)false
dc.title.pt_BR.fl_str_mv Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal
dc.title.en.pt_BR.fl_str_mv Signature of circulating microRNAs (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) as promising biomarkers for early diagnosis of colorectal cancer
title Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal
spellingShingle Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal
Silva, Camila Meirelles de Souza
Biomarcadores
MicroRNAs
Neoplasias Colorretais
title_short Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal
title_full Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal
title_fullStr Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal
title_full_unstemmed Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal
title_sort Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal
author Silva, Camila Meirelles de Souza
author_facet Silva, Camila Meirelles de Souza
author_role author
dc.contributor.author.fl_str_mv Silva, Camila Meirelles de Souza
dc.contributor.advisor1.fl_str_mv Lima Júnior, Roberto César Pereira
contributor_str_mv Lima Júnior, Roberto César Pereira
dc.subject.por.fl_str_mv Biomarcadores
MicroRNAs
Neoplasias Colorretais
topic Biomarcadores
MicroRNAs
Neoplasias Colorretais
description Colorectal cancer is a disease with high incidence and mortality and represents one of the great challenges for public health. It is high mortality rate is, in part, related to the diagnosis of advanced disease. This has encouraged the search for new tools for early detection of colorectal cancer that are more effective, less invasive and that can be performed on a large scale. Under this perspective, the analysis of the serum expression of MicroRNAs (miRNAs) is presented as an alternative, since they are highly stable in the blood and are frequently altered in several pathologies, especially in cancer. The miRNAs are a class of small RNAs that act as transcriptional regulators affecting several pathophysiological processes including the developmental stages of colorectal cancer. In this context, the present study was conducted to identify a differential expression profile of circulating miRNAs as a possible noninvasive method for early diagnosis of colorectal cancer. For this, we used the methodology of large scale analysis to identify the expression profile of plasma miRNAs in subjects carefully divided into non-cancerous group (healthy volunteers, patients with hyperplastic polyp and adenoma) vs. cancer group (colorectal cancer and colorectal cancer with metastasis). Subsequently the differentially expressed miRNAs were validated by qRT-PCR. The discriminant power of the miRNAs between the groups was evaluated by ROC curve and multivariate model and the prediction of targets and pathways involved was analyzed using the bioinformatics tools. Were identified four miRNAs (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p and hsa-miR-542-5p) overexpressed in the cancer group when compared to non-cancer group, being the hsa-miR-28-3p the strongest diagnostic marker (ROC 0.7841 [0.6890-0.8873]) followed by hsa-miR-542-5p (ROC 0.7174 [0.6167-0.8181]). Association between two miRNAs also showed high discriminant power between groups cancer vs. non-cancer with the following associations: hsa-miR-28-3p and hsa-miR-542-5p (ROC 0.7363 [0.6670-0.8056]); hsa-miR-28-3p and hsa-miR-106a-5p (0.7324 [0.6597-0.8051]) and (hsa-miR-28-3p and hsa-let-7e-5p (ROC 0.7264 [0.6555-0.7974]), and association of three and four miRNAs: hsa-miR-106a-5p, hsa-let-7e-5p and hsa-miR-28-3p (ROC 0.7102 [0.6506-0.7676]) and hsa-miR-106a-5p, hsa-let-7e-5p, hsa-miR-28-3p and hsa-miR-542-5p (ROC 0.7053 [0.6543-0.7564]). Additionally, the prediction of targets and signaling pathways in silico showed that hsa-let-7e-5p, hsa-miR-106a-5p, and hsa-miR-28-3p regulate enriched genes in pathways associated with cancer. Therefore, In the present study it was demonstrated that the evaluation of serum expression of hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p and hsa-miR-542-5p can be used as a miRNAs signature for the less-invasive and early diagnostic of colorectal cancer.
publishDate 2019
dc.date.accessioned.fl_str_mv 2019-07-01T12:57:07Z
dc.date.available.fl_str_mv 2019-07-01T12:57:07Z
dc.date.issued.fl_str_mv 2019-06-26
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv SILVA, C. M. S. Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal. 2019. 95 f. Tese (Doutorado em Farmacologia) – Faculdade de Medicina, Universidade Federal do Ceará, Fortaleza, 2019.
dc.identifier.uri.fl_str_mv http://www.repositorio.ufc.br/handle/riufc/43228
identifier_str_mv SILVA, C. M. S. Assinatura de microRNAs circulantes (hsa-let-7e-5p, hsa-miR-106a-5p, hsa-miR-28-3p e hsa-miR-542-5p) como promissores biomarcadores para o diagnóstico precoce de câncer colorretal. 2019. 95 f. Tese (Doutorado em Farmacologia) – Faculdade de Medicina, Universidade Federal do Ceará, Fortaleza, 2019.
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