Análise compartiva da evolução de miRNAs utilizando insetos como modelo

Detalhes bibliográficos
Ano de defesa: 2016
Autor(a) principal: Karla Pollyanna Vieira de Oliveira
Orientador(a): Não Informado pela instituição
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal de Minas Gerais
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: https://hdl.handle.net/1843/65126
Resumo: MicroRNAs (miRNAs) are a small non-coding RNA class discovered in 1993. These sequences originate from the endogenous precursors, which are processed into small RNAs ranging size from 20 to 24 nt. MiRNAs are conserved in eukaryotes and they are important gene regulators. Despite their importance and the sequence conservation among species, other miRNAs’ features conservation remains unclear since there are no studies of such aspects. To answer this question, we generated small RNAs libraries – derived from three dipteran insects whose evolutionary distance is approximately 250 million years ago. The libraries were sequenced, and the miRNAs of each organism were analyzed according to species conservation, sequence, size profile, 5' homogeneity, genomic origin, precursor origin, and preferably base. Overall, it was observed high conservation of miRNAs between the three dipteran insects not only in terms of their sequences, but also in terms of all the other features. However, when we analyzed miRNAs that were found in only one specie, it was observed a higher divergence of miRNAs patterns than observed in conserved miRNAs. These observations can be explained by the time of miRNAs evolution. Conserved miRNAs are evolutionarily older than non-conserved miRNAs and they have been naturally selected. In contrast, the miRNA-specific species were the most recent and therefore have not been selected. Thus, these results suggest that the evolutionary pressure suffered by miRNAs is reflected not only in their sequence, but also in other intrinsic characteristics probably linked to its overall structure that determines how it is their biogenesis.
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spelling 2024-03-04T16:13:19Z2025-09-09T01:03:14Z2024-03-04T16:13:19Z2016-01-29https://hdl.handle.net/1843/65126MicroRNAs (miRNAs) are a small non-coding RNA class discovered in 1993. These sequences originate from the endogenous precursors, which are processed into small RNAs ranging size from 20 to 24 nt. MiRNAs are conserved in eukaryotes and they are important gene regulators. Despite their importance and the sequence conservation among species, other miRNAs’ features conservation remains unclear since there are no studies of such aspects. To answer this question, we generated small RNAs libraries – derived from three dipteran insects whose evolutionary distance is approximately 250 million years ago. The libraries were sequenced, and the miRNAs of each organism were analyzed according to species conservation, sequence, size profile, 5' homogeneity, genomic origin, precursor origin, and preferably base. Overall, it was observed high conservation of miRNAs between the three dipteran insects not only in terms of their sequences, but also in terms of all the other features. However, when we analyzed miRNAs that were found in only one specie, it was observed a higher divergence of miRNAs patterns than observed in conserved miRNAs. These observations can be explained by the time of miRNAs evolution. Conserved miRNAs are evolutionarily older than non-conserved miRNAs and they have been naturally selected. In contrast, the miRNA-specific species were the most recent and therefore have not been selected. Thus, these results suggest that the evolutionary pressure suffered by miRNAs is reflected not only in their sequence, but also in other intrinsic characteristics probably linked to its overall structure that determines how it is their biogenesis.CAPES - Coordenação de Aperfeiçoamento de Pessoal de Nível SuperiorporUniversidade Federal de Minas GeraismiRNAsSequenciamentoInsetosBioinformáticaInsetosMicroRNAsAnálise de Sequência.Análise compartiva da evolução de miRNAs utilizando insetos como modeloComparative analysis of miRNAs evolution using insects as modelinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisKarla Pollyanna Vieira de Oliveirainfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFMGinstname:Universidade Federal de Minas Gerais (UFMG)instacron:UFMGhttp://lattes.cnpq.br/7673656510731331João Trindade Marqueshttp://lattes.cnpq.br/0135765503963553Eric Roberto Guimarães Rocha AguiarBetânia Paiva DrummondMaurício Roberto Viana Sant'annaMicroRNAs (miRNAs) são uma classe de pequenos RNAs não-codificantes descobertos em 1993. Estas sequências se originam de um RNA precursor endógeno, que é processado em um pequeno RNA cujo tamanho varia de 20 a 24 nucleotídeos. Os miRNAs são conservados em eucariotos e possuem importante função na regulação gênica. Apesar da sua importância e da conservação das sequências de miRNAs entre espécies, pouco se sabe se outras características que definem os miRNAs são também conservadas, uma vez que não há estudos de tais aspectos. Para responder a essa questão, foram geradas bibliotecas de pequenos RNAs derivadas de três insetos (Drosophila melanogaster, Aedes aegypti e Lutzomyia longipalpis), todos da ordem Diptera, e cuja distância evolutiva é de aproximadamente 250 milhões de anos. As bibliotecas foram sequenciadas e analisadas sendo os miRNAs de cada espécie avaliados não só quanto à conservação de sequência, mas também com relação ao perfil de tamanho, homogeneidade da região 5’, origem genômica, origem no precursor, e preferência de base. De modo geral, houve grande conservação de miRNAs entre as três espécies não só em termo de suas sequências, mas também de todas as demais características avaliadas. Todavia, analisando os miRNAs espécie-específicos, foi observada maior divergência dos padrões característicos dos miRNAs. Os miRNAs conservados surgiram há mais tempo e portanto possuem maior tempo de evolução e seleção natural. Em contraste, os miRNA espécie-específicos seriam os mais recentes e por isso podem ainda estar passando por processos seletivos. Assim, esses resultados sugerem que a pressão evolutiva sofrida pelos miRNAs é refletida não somente na sua sequência, mas também em outras características intrínsecas provavelmente ligadas à sua estrutura geral que determina como será sua biogênese.BrasilICB - INSTITUTO DE CIÊNCIAS BIOLOGICASPrograma de Pós-Graduação em BioinformaticaUFMGORIGINALKarlaOliveira.DissertaçãoFinal.pdfapplication/pdf11184247https://repositorio.ufmg.br//bitstreams/2e465ef9-8ff2-4800-886d-3adf9b3a532d/download050b8126249ca42d5322332611642172MD51trueAnonymousREADLICENSElicense.txttext/plain2118https://repositorio.ufmg.br//bitstreams/64f8867f-ff0e-4ff7-a0e1-9c0c965cc637/downloadcda590c95a0b51b4d15f60c9642ca272MD52falseAnonymousREAD1843/651262025-09-08 22:03:14.311open.accessoai:repositorio.ufmg.br:1843/65126https://repositorio.ufmg.br/Repositório InstitucionalPUBhttps://repositorio.ufmg.br/oairepositorio@ufmg.bropendoar:2025-09-09T01:03:14Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG)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
dc.title.none.fl_str_mv Análise compartiva da evolução de miRNAs utilizando insetos como modelo
dc.title.alternative.none.fl_str_mv Comparative analysis of miRNAs evolution using insects as model
title Análise compartiva da evolução de miRNAs utilizando insetos como modelo
spellingShingle Análise compartiva da evolução de miRNAs utilizando insetos como modelo
Karla Pollyanna Vieira de Oliveira
Bioinformática
Insetos
MicroRNAs
Análise de Sequência.
miRNAs
Sequenciamento
Insetos
title_short Análise compartiva da evolução de miRNAs utilizando insetos como modelo
title_full Análise compartiva da evolução de miRNAs utilizando insetos como modelo
title_fullStr Análise compartiva da evolução de miRNAs utilizando insetos como modelo
title_full_unstemmed Análise compartiva da evolução de miRNAs utilizando insetos como modelo
title_sort Análise compartiva da evolução de miRNAs utilizando insetos como modelo
author Karla Pollyanna Vieira de Oliveira
author_facet Karla Pollyanna Vieira de Oliveira
author_role author
dc.contributor.author.fl_str_mv Karla Pollyanna Vieira de Oliveira
dc.subject.por.fl_str_mv Bioinformática
Insetos
MicroRNAs
Análise de Sequência.
topic Bioinformática
Insetos
MicroRNAs
Análise de Sequência.
miRNAs
Sequenciamento
Insetos
dc.subject.other.none.fl_str_mv miRNAs
Sequenciamento
Insetos
description MicroRNAs (miRNAs) are a small non-coding RNA class discovered in 1993. These sequences originate from the endogenous precursors, which are processed into small RNAs ranging size from 20 to 24 nt. MiRNAs are conserved in eukaryotes and they are important gene regulators. Despite their importance and the sequence conservation among species, other miRNAs’ features conservation remains unclear since there are no studies of such aspects. To answer this question, we generated small RNAs libraries – derived from three dipteran insects whose evolutionary distance is approximately 250 million years ago. The libraries were sequenced, and the miRNAs of each organism were analyzed according to species conservation, sequence, size profile, 5' homogeneity, genomic origin, precursor origin, and preferably base. Overall, it was observed high conservation of miRNAs between the three dipteran insects not only in terms of their sequences, but also in terms of all the other features. However, when we analyzed miRNAs that were found in only one specie, it was observed a higher divergence of miRNAs patterns than observed in conserved miRNAs. These observations can be explained by the time of miRNAs evolution. Conserved miRNAs are evolutionarily older than non-conserved miRNAs and they have been naturally selected. In contrast, the miRNA-specific species were the most recent and therefore have not been selected. Thus, these results suggest that the evolutionary pressure suffered by miRNAs is reflected not only in their sequence, but also in other intrinsic characteristics probably linked to its overall structure that determines how it is their biogenesis.
publishDate 2016
dc.date.issued.fl_str_mv 2016-01-29
dc.date.accessioned.fl_str_mv 2024-03-04T16:13:19Z
2025-09-09T01:03:14Z
dc.date.available.fl_str_mv 2024-03-04T16:13:19Z
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dc.identifier.uri.fl_str_mv https://hdl.handle.net/1843/65126
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dc.publisher.none.fl_str_mv Universidade Federal de Minas Gerais
publisher.none.fl_str_mv Universidade Federal de Minas Gerais
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFMG
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