Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.

Detalhes bibliográficos
Ano de defesa: 2012
Autor(a) principal: Andrade, Renato Ramos de lattes
Orientador(a): Silva, Clarissa Oliveira da lattes
Banca de defesa: Bruns, Roy Edward, Bauerfeldt, Glauco Favilla
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Universidade Federal Rural do Rio de Janeiro
Programa de Pós-Graduação: Programa de P?s-Gradua??o em Qu?mica
Departamento: Instituto de Ci?ncias Exatas
País: Brasil
Palavras-chave em Português:
Palavras-chave em Inglês:
Área do conhecimento CNPq:
Link de acesso: https://tede.ufrrj.br/jspui/handle/jspui/3764
Resumo: Experimental results obtained for monosaccharides are always an average of the several conformations of the system. A theoretical study is necessary to obtain the most stable individual conformations. The goal of this work is to select the most stable conformers of D-mannose in aqueous solution at room temperature, and validate them by comparing the experimental value of specific rotation with those obtained from the selected conformations. We started from two initial conformations (? anomer and ? anomer), geometrically optimized in vacuum using B3LYP/6-31+G*. Starting from the respective anomeric initial geometries, 1458 possible conformations (729 ? + 729 ?) were obtained assuming that staggered conformations of the hydrogen atoms of hydroxyl groups with regard to the C-OH bond are energetically favored (3 (C1) x 3 (C2) x 3 (C3) x 3 (C4) x 3 (C5) x 3 (C6) = 729). Single-point calculations in vacuum were performed for all 1458 conformational possibilities using B3LYP/6-31+G *. 97 conformational possibilities were selected (those which had relative energy values lower than 10 kcal/mol, from the energy value of the initial geometry, taken as reference), and their geometry optimized in vacuum from B3LYP/6-31+G* calculations, which reduced the original set from 97 to 64 conformers. Geometry optimization and vibrational frequency calculations were performed and used to calculate the specific rotation for the system. The anomeric ratio value (?:?) obtained was 50:50. The result of rotameric abundance approached to the experimental data only for the gt rotamer. Two conformations presented a peculiar behavior when solvated: the relative abundance of ?_336661 conformation showed a drastic increase, while the conformation ?_111166 has decreased very much. Analyzing the solvation process, it was found that when we use the value of Gibbs free energy in solution without computing the entropy, there are changes in the values of the Boltzmann population, which can reproduce the experimental value of anomeric ratio (?:?), suggesting that the entropy for the system perhaps is not properly computed from the harmonic approximation. The specific rotation value also is closer to the experimental data when the new population values are used.
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spelling Silva, Clarissa Oliveira da014.109.957-71http://lattes.cnpq.br/3211933004567550Bruns, Roy EdwardBauerfeldt, Glauco Favilla057.775.217-03http://lattes.cnpq.br/9571154466212777Andrade, Renato Ramos de2020-07-28T18:55:12Z2012-03-06ANDRADE, Renato Ramos de. Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.. 2012. 96 f. Disserta??o (Programa de P?s-Gradua??o em Qu?mica) - Universidade Federal Rural do Rio de Janeiro, Serop?dica.https://tede.ufrrj.br/jspui/handle/jspui/3764Experimental results obtained for monosaccharides are always an average of the several conformations of the system. A theoretical study is necessary to obtain the most stable individual conformations. The goal of this work is to select the most stable conformers of D-mannose in aqueous solution at room temperature, and validate them by comparing the experimental value of specific rotation with those obtained from the selected conformations. We started from two initial conformations (? anomer and ? anomer), geometrically optimized in vacuum using B3LYP/6-31+G*. Starting from the respective anomeric initial geometries, 1458 possible conformations (729 ? + 729 ?) were obtained assuming that staggered conformations of the hydrogen atoms of hydroxyl groups with regard to the C-OH bond are energetically favored (3 (C1) x 3 (C2) x 3 (C3) x 3 (C4) x 3 (C5) x 3 (C6) = 729). Single-point calculations in vacuum were performed for all 1458 conformational possibilities using B3LYP/6-31+G *. 97 conformational possibilities were selected (those which had relative energy values lower than 10 kcal/mol, from the energy value of the initial geometry, taken as reference), and their geometry optimized in vacuum from B3LYP/6-31+G* calculations, which reduced the original set from 97 to 64 conformers. Geometry optimization and vibrational frequency calculations were performed and used to calculate the specific rotation for the system. The anomeric ratio value (?:?) obtained was 50:50. The result of rotameric abundance approached to the experimental data only for the gt rotamer. Two conformations presented a peculiar behavior when solvated: the relative abundance of ?_336661 conformation showed a drastic increase, while the conformation ?_111166 has decreased very much. Analyzing the solvation process, it was found that when we use the value of Gibbs free energy in solution without computing the entropy, there are changes in the values of the Boltzmann population, which can reproduce the experimental value of anomeric ratio (?:?), suggesting that the entropy for the system perhaps is not properly computed from the harmonic approximation. The specific rotation value also is closer to the experimental data when the new population values are used.Os resultados obtidos experimentalmente para os monossacar?deos s?o sempre uma m?dia das v?rias conforma??es presentes no sistema. Faz-se necess?rio o estudo te?rico para obten??o individual das conforma??es mais est?veis. Diante disso o objetivo deste trabalho ? selecionar os conf?rmeros mais est?veis da D-manose em solu??o aquosa, na temperatura ambiente, e valid?-los atrav?s da compara??o com o valor de rota??o espec?fica experimental. Partiu-se de duas conforma??es iniciais (um an?mero ? e um an?mero ?), constru?das no v?cuo e geometricamente otimizadas utilizando B3LYP/6-31+G*. Partindo-se das respectivas geometrias anom?ricas iniciais, um total final de 1458 possibilidades conformacionais (729 ?+ 729 ?) foram obtidas supondo que somente posi??es estreladas para os ?tomos de hidrog?nio dos grupos hidroxila ao longo da liga??o C-OH s?o energeticamente favorecidas (3 (C1) x 3 (C2) x 3 (C3) x 3 (C4) x 3 (C5) x 3 (C6) = 729). C?lculos "single-point" no v?cuo foram realizados para as 1458 possibilidades conformacionais utilizando B3LYP/6-31+G*. 97 possibilidades conformacionais foram selecionadas (aquelas que apresentaram valor de energia relativa menor que 10 kcal/mol, tomando como referencia a respectiva geometria inicial) e tiveram a geometria otimizada no v?cuo utilizando B3LYP/6-31+G*, o que reduziu o conjunto de 97 possibilidades conformacionais para 64 conf?rmeros. C?lculos de otimiza??o de geometria e frequ?ncia vibracional foram realizados e calculou-se a rota??o espec?fica para o sistema.O valor de raz?o anom?rica (?:?) obtido foi 50:50. O resultado de abundancia rotam?rica se aproximou do dado experimental apenas para o rot?mero gt. Duas conforma??es apresentaram um comportamento um tanto peculiar na mudan?a do v?cuo para solu??o. A conforma??o ?_336661 apresentou um aumento dr?stico no seu valor de abundancia enquanto a conforma??o ?_111166 uma diminui??o. Analisando o processo de solvata??o, constatou-se que quando utiliza-se o valor de energia livre de Gibbs em solu??o sem computar a entropia, h? altera??o nos valores de popula??o de Boltzmann, que passam a reproduzir o valor experimental de raz?o anom?rica (?:?), indicando que a entropia para o sistema solvatado talvez n?o esteja sendo bem descrita. O resultado de rota??o especifica tamb?m aproxima-se do dado experimental, quando os novos valores de popula??o s?o utilizados.Submitted by Sandra Pereira (srpereira@ufrrj.br) on 2020-07-28T18:55:11Z No. of bitstreams: 1 2012 - Renato Ramos de Andrade.pdf: 1828147 bytes, checksum: 247209edc6272eeb9f5d9dbd8317526d (MD5)Made available in DSpace on 2020-07-28T18:55:12Z (GMT). No. of bitstreams: 1 2012 - Renato Ramos de Andrade.pdf: 1828147 bytes, checksum: 247209edc6272eeb9f5d9dbd8317526d (MD5) Previous issue date: 2012-03-06Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gico, CNPq, Brasil.application/pdfhttps://tede.ufrrj.br/retrieve/61372/2012%20-%20Renato%20Ramos%20de%20Andrade.pdf.jpgporUniversidade Federal Rural do Rio de JaneiroPrograma de P?s-Gradua??o em Qu?micaUFRRJBrasilInstituto de Ci?ncias Exatas1K. P. C. Vollhardt, N. E. Schore. Qu?mica Org?nica: Estrutura e Fun??o, 4? ed. Bookman, 2004. 2Devulapalle, K. S.; Segura, A. G.; Ferrer, M.; Alcalde, G. M.; Plou, F. J. Carbohyd. Res. 2004, 339, 1029. 3Veres-Bencomo, V.; Fernandez-Santana, V.; Hardy, E.; Toledo, M. E.; Rodriguez, M. C.; Heynngnezz, L., Rodrigues, A.; Baly, A., Herrera, L.; Izquierdo, W.; Villar, A.; Valdes, Y.; Cosme, V.; Deler, M. 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Polarimetry, Saccharimetry and the Sugars, NBS Circular C440,U.S. Government Printing Office, Washington D.C., 1942, p. 762.Monossacar?deoraz?o anom?ricarota??o espec?ficaMonosaccharideanomeric ratiospecific rotationQu?micaEstudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.Theoretical study for obtaining the most stable D-mannose conformers in aqueous solution.info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UFRRJinstname:Universidade Federal Rural do Rio de Janeiro (UFRRJ)instacron:UFRRJTHUMBNAIL2012 - Renato Ramos de Andrade.pdf.jpg2012 - Renato Ramos de Andrade.pdf.jpgimage/jpeg1943http://localhost:8080/tede/bitstream/jspui/3764/4/2012+-+Renato+Ramos+de+Andrade.pdf.jpgcc73c4c239a4c332d642ba1e7c7a9fb2MD54TEXT2012 - Renato Ramos de Andrade.pdf.txt2012 - Renato Ramos de Andrade.pdf.txttext/plain168382http://localhost:8080/tede/bitstream/jspui/3764/3/2012+-+Renato+Ramos+de+Andrade.pdf.txt0005b0b23fd6aa84a5176b4f15869c4eMD53ORIGINAL2012 - Renato Ramos de Andrade.pdf2012 - Renato Ramos de Andrade.pdfapplication/pdf1828147http://localhost:8080/tede/bitstream/jspui/3764/2/2012+-+Renato+Ramos+de+Andrade.pdf247209edc6272eeb9f5d9dbd8317526dMD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82089http://localhost:8080/tede/bitstream/jspui/3764/1/license.txt7b5ba3d2445355f386edab96125d42b7MD51jspui/37642022-08-02 13:58:05.536oai:localhost: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Biblioteca Digital de Teses e Dissertaçõeshttps://tede.ufrrj.br/PUBhttps://tede.ufrrj.br/oai/requestbibliot@ufrrj.br||bibliot@ufrrj.bropendoar:2022-08-02T16:58:05Biblioteca Digital de Teses e Dissertações da UFRRJ - Universidade Federal Rural do Rio de Janeiro (UFRRJ)false
dc.title.por.fl_str_mv Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.
dc.title.alternative.eng.fl_str_mv Theoretical study for obtaining the most stable D-mannose conformers in aqueous solution.
title Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.
spellingShingle Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.
Andrade, Renato Ramos de
Monossacar?deo
raz?o anom?rica
rota??o espec?fica
Monosaccharide
anomeric ratio
specific rotation
Qu?mica
title_short Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.
title_full Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.
title_fullStr Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.
title_full_unstemmed Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.
title_sort Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.
author Andrade, Renato Ramos de
author_facet Andrade, Renato Ramos de
author_role author
dc.contributor.advisor1.fl_str_mv Silva, Clarissa Oliveira da
dc.contributor.advisor1ID.fl_str_mv 014.109.957-71
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/3211933004567550
dc.contributor.referee1.fl_str_mv Bruns, Roy Edward
dc.contributor.referee2.fl_str_mv Bauerfeldt, Glauco Favilla
dc.contributor.authorID.fl_str_mv 057.775.217-03
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/9571154466212777
dc.contributor.author.fl_str_mv Andrade, Renato Ramos de
contributor_str_mv Silva, Clarissa Oliveira da
Bruns, Roy Edward
Bauerfeldt, Glauco Favilla
dc.subject.por.fl_str_mv Monossacar?deo
raz?o anom?rica
rota??o espec?fica
topic Monossacar?deo
raz?o anom?rica
rota??o espec?fica
Monosaccharide
anomeric ratio
specific rotation
Qu?mica
dc.subject.eng.fl_str_mv Monosaccharide
anomeric ratio
specific rotation
dc.subject.cnpq.fl_str_mv Qu?mica
description Experimental results obtained for monosaccharides are always an average of the several conformations of the system. A theoretical study is necessary to obtain the most stable individual conformations. The goal of this work is to select the most stable conformers of D-mannose in aqueous solution at room temperature, and validate them by comparing the experimental value of specific rotation with those obtained from the selected conformations. We started from two initial conformations (? anomer and ? anomer), geometrically optimized in vacuum using B3LYP/6-31+G*. Starting from the respective anomeric initial geometries, 1458 possible conformations (729 ? + 729 ?) were obtained assuming that staggered conformations of the hydrogen atoms of hydroxyl groups with regard to the C-OH bond are energetically favored (3 (C1) x 3 (C2) x 3 (C3) x 3 (C4) x 3 (C5) x 3 (C6) = 729). Single-point calculations in vacuum were performed for all 1458 conformational possibilities using B3LYP/6-31+G *. 97 conformational possibilities were selected (those which had relative energy values lower than 10 kcal/mol, from the energy value of the initial geometry, taken as reference), and their geometry optimized in vacuum from B3LYP/6-31+G* calculations, which reduced the original set from 97 to 64 conformers. Geometry optimization and vibrational frequency calculations were performed and used to calculate the specific rotation for the system. The anomeric ratio value (?:?) obtained was 50:50. The result of rotameric abundance approached to the experimental data only for the gt rotamer. Two conformations presented a peculiar behavior when solvated: the relative abundance of ?_336661 conformation showed a drastic increase, while the conformation ?_111166 has decreased very much. Analyzing the solvation process, it was found that when we use the value of Gibbs free energy in solution without computing the entropy, there are changes in the values of the Boltzmann population, which can reproduce the experimental value of anomeric ratio (?:?), suggesting that the entropy for the system perhaps is not properly computed from the harmonic approximation. The specific rotation value also is closer to the experimental data when the new population values are used.
publishDate 2012
dc.date.issued.fl_str_mv 2012-03-06
dc.date.accessioned.fl_str_mv 2020-07-28T18:55:12Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv ANDRADE, Renato Ramos de. Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.. 2012. 96 f. Disserta??o (Programa de P?s-Gradua??o em Qu?mica) - Universidade Federal Rural do Rio de Janeiro, Serop?dica.
dc.identifier.uri.fl_str_mv https://tede.ufrrj.br/jspui/handle/jspui/3764
identifier_str_mv ANDRADE, Renato Ramos de. Estudo te?rico para obten??o dos conf?rmeros mais est?veis em solu??o aquosa para D-manose.. 2012. 96 f. Disserta??o (Programa de P?s-Gradua??o em Qu?mica) - Universidade Federal Rural do Rio de Janeiro, Serop?dica.
url https://tede.ufrrj.br/jspui/handle/jspui/3764
dc.language.iso.fl_str_mv por
language por
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