Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding

Detalhes bibliográficos
Ano de defesa: 2022
Autor(a) principal: Meira, Daniela
Orientador(a): Não Informado pela instituição
Banca de defesa: Não Informado pela instituição
Tipo de documento: Tese
Tipo de acesso: Acesso aberto
Idioma: por
eng
Instituição de defesa: Universidade Tecnológica Federal do Paraná
Pato Branco
Brasil
Programa de Pós-Graduação em Agronomia
UTFPR
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: http://repositorio.utfpr.edu.br/jspui/handle/1/27205
Resumo: The objective of this study was to summarize the evolution of scientific research about fungus Phakopsora pachyrhizi affecting soybean; to develop and validate KASP molecular markers in soybean populations for Asian soybean rust (ASR) resistance genes Rpp1 (PI 200492, PI 594538A, PI 587880A, PI 594723), Rpp2 (PI 230970), Rpp3 (PI 506764), Rpp4 (PI 459025A), and Rpp5 (PI 506764, PI 200487), and pyramid Rpp genes in soybean populations. A scientometric analysis was applied in the Thomson Reuters Web of Science database that reported studies of the ASR from 1945 to 2018. Several articles aiming to understand fungal etiology and strategies to control the pathogen were published. There was an increase in the number of publications between 2005 and 2013 related to ASR dissemination in America. Several countries, institutions, and plant scientists are deeply involved in ASR research and have been making efforts to control this disease and ensure food security worldwide. The F2 soybean populations derived from crosses between rust-susceptible (55I57RSF IPRO, 63I64RSF IPRO) x rust-resistant sources (PI 200492, PI 594738A, PI 587880A, PI 594723, PI 230970, PI 506764, PI 459025A, and PI 200487), were individually evaluated in field conditions for ASR phenotypic reactions. SNP markers were developed according to markers associated with Rpp genes available at the SoyBase, using KASP methodology. Based on a slight difference in map position and different phenotypic disease reactions of PI 200492, the PI 594723 carries a resistance gene Rpp1-b mapped in Chr 18 in a 12.4 cM region. A total of 26 KASP markers were significantly associated with ASR. Among these, M1, M5, and M6 (Rpp1), M13 and M14 (Rpp2), M16, M17 and M20 (Rpp3), M25 and M26 (Rpp4), and M27 and M28 (Rpp5) had the potential to be used in marker-assisted selection strategies. From the markers validation, fifteen pyramided populations with different Rpp genes were developed, and the F3 lines were evaluated for phenotypic resistance and yield. The Rpp1-b of different resistant sources (PI 587880A, PI 594723, PI 4538A) have higher resistance and yield performance comparing other genes. The best gene combinations were Rpp1-b + Rpp5, showing neither uredinia formation nor sporulation in more than 70% of the F3 population. Rpp-pyramided lines developed in this study have the potential to be used in backcross programs for improving Asian soybean rust resistance.
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spelling Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramidingResistência durável à ferrugem asiática da soja por piramidação gênicaSoja - CultivoFerrugem asiáticaGrãos - Doenças e pragasSoja - Melhoramento genéticoGenes - PesquisaSoybean - PlantingPhakopsora pachyrhiziGrain - Diseases and pestsSoybean - BreedingGenes - ResearchCNPQ::CIENCIAS AGRARIAS::AGRONOMIAAgronomiaThe objective of this study was to summarize the evolution of scientific research about fungus Phakopsora pachyrhizi affecting soybean; to develop and validate KASP molecular markers in soybean populations for Asian soybean rust (ASR) resistance genes Rpp1 (PI 200492, PI 594538A, PI 587880A, PI 594723), Rpp2 (PI 230970), Rpp3 (PI 506764), Rpp4 (PI 459025A), and Rpp5 (PI 506764, PI 200487), and pyramid Rpp genes in soybean populations. A scientometric analysis was applied in the Thomson Reuters Web of Science database that reported studies of the ASR from 1945 to 2018. Several articles aiming to understand fungal etiology and strategies to control the pathogen were published. There was an increase in the number of publications between 2005 and 2013 related to ASR dissemination in America. Several countries, institutions, and plant scientists are deeply involved in ASR research and have been making efforts to control this disease and ensure food security worldwide. The F2 soybean populations derived from crosses between rust-susceptible (55I57RSF IPRO, 63I64RSF IPRO) x rust-resistant sources (PI 200492, PI 594738A, PI 587880A, PI 594723, PI 230970, PI 506764, PI 459025A, and PI 200487), were individually evaluated in field conditions for ASR phenotypic reactions. SNP markers were developed according to markers associated with Rpp genes available at the SoyBase, using KASP methodology. Based on a slight difference in map position and different phenotypic disease reactions of PI 200492, the PI 594723 carries a resistance gene Rpp1-b mapped in Chr 18 in a 12.4 cM region. A total of 26 KASP markers were significantly associated with ASR. Among these, M1, M5, and M6 (Rpp1), M13 and M14 (Rpp2), M16, M17 and M20 (Rpp3), M25 and M26 (Rpp4), and M27 and M28 (Rpp5) had the potential to be used in marker-assisted selection strategies. From the markers validation, fifteen pyramided populations with different Rpp genes were developed, and the F3 lines were evaluated for phenotypic resistance and yield. The Rpp1-b of different resistant sources (PI 587880A, PI 594723, PI 4538A) have higher resistance and yield performance comparing other genes. The best gene combinations were Rpp1-b + Rpp5, showing neither uredinia formation nor sporulation in more than 70% of the F3 population. Rpp-pyramided lines developed in this study have the potential to be used in backcross programs for improving Asian soybean rust resistance.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)O objetivo deste estudo foi evidenciar a evolução da pesquisa científica sobre o fungo Phakopsora pachyrhizi sobre a soja; desenvolver e validar marcadores moleculares KASP em populações de soja para resistência a ferrugem Asiática da soja (FAS) dos genes Rpp1 (PI 200492, PI 594538A, PI 587880A, PI 594723), Rpp2 (PI 230970), Rpp3 (PI 506764), Rpp4 (PI 459025A), e Rpp5 (PI 506764, PI 200487); e piramidar genes Rpp em populações de soja. Análise cientométrica foi aplicada no banco de dados Thomson Reuters Web of Science que reportaram estudos de FAS de 1945 a 2018. Inúmeros artigos sobre a etiologia do fungo, melhorar estratégias de controle do patógeno foram desenvolvidos. Houve um aumento no número de publicações entre 2005 a 2013, devido a disseminação da FAS na América. Vários países, instituições e cientistas de plantas estão profundamente envolvidos na pesquisa de ASR e têm feito esforços para controlar esta doença e garantir a segurança alimentar em todo o mundo. Para o desenvolvimento de populações F2 de soja, foram realizados cruzamento entre fontes suscetíveis (55I57RSF IPRO, 63I64RSF IPRO) x resistentes a FAS (PI 200492, PI 594538A, PI 587880A, PI 594723, PI 230970, PI 506764, PI 459025A, PI 200487), foram avaliados a campo para reação fenotípica de FAS. Marcadores SNP foram desenvolvidos de acordo com marcadores associados com os genes Rpp, disponíveis no SoyBase, usando metodologia KASP. Com base na leve diferença na posição do mapa e diferente reação fenotípica de PI 200492, a PI 594723 carrega gene de resistência Rpp1-b mapeado em Chr 18, em região de 12,4 cM. Um total de 26 marcadores KASP foram significativamente associados com FAS. Entre estes, M1, M5 e M6 (Rpp1), M13 e M14 (Rpp2), M16, M17 e M20 (Rpp3), M25 e M26 (Rpp4), e M27 e M28 (Rpp5) tem potencial para serem usados na seleção assistida por marcadores. A partir da validação dos marcadores, quinze populações com diferentes combinações de genes Rpp foram desenvolvidas, linhagens F3 foram avaliadas para resistência fenotípica e rendimento de grãos. O Rpp1-b de diferentes fontes de resistência (PI 587880A, PI 594723, PI 594538A) têm maior resistência e rendimento, comparado aos outros genes. As melhores combinações de genes foram Rpp1-b + Rpp5, não apresentando formação de uredinia nem esporulação em mais de 70% da população. Linhagens piramidadas desenvolvidas neste estudo têm potencial para serem utilizadas em programas de retrocruzamento para melhorar a resistência à ferrugem da soja asiática.Universidade Tecnológica Federal do ParanáPato BrancoBrasilPrograma de Pós-Graduação em AgronomiaUTFPRBenin, Giovanihttps://orcid.org/0000-0002-7354-5568http://lattes.cnpq.br/8634180310157308Beche, Eduardohttps://orcid.org/0000-0003-2318-3615http://lattes.cnpq.br/7034958251695444Malone, Gasparhttps://orcid.org/0000-0003-2812-063Xhttp://lattes.cnpq.br/3143574010442129Benin, Giovanihttps://orcid.org/0000-0002-7354-5568http://lattes.cnpq.br/8634180310157308Martins, Polyana Kellyhttp://lattes.cnpq.br/5450356741124090Brito Junior, Salvador Limahttps://orcid.org/0000-0002-0737-9186http://lattes.cnpq.br/4171503619020575Meira, Daniela2022-02-21T12:29:55Z2022-02-21T12:29:55Z2022-02-11info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfMEIRA, Daniela. Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding. 2022. Tese (Doutorado em Agronomia) - Universidade Tecnológica Federal do Paraná, Pato Branco, 2022.http://repositorio.utfpr.edu.br/jspui/handle/1/27205porenghttps://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessreponame:Repositório Institucional da UTFPR (da Universidade Tecnológica Federal do Paraná (RIUT))instname:Universidade Tecnológica Federal do Paraná (UTFPR)instacron:UTFPR2022-02-22T06:06:23Zoai:repositorio.utfpr.edu.br:1/27205Repositório InstitucionalPUBhttp://repositorio.utfpr.edu.br:8080/oai/requestriut@utfpr.edu.br || sibi@utfpr.edu.bropendoar:2022-02-22T06:06:23Repositório Institucional da UTFPR (da Universidade Tecnológica Federal do Paraná (RIUT)) - Universidade Tecnológica Federal do Paraná (UTFPR)false
dc.title.none.fl_str_mv Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding
Resistência durável à ferrugem asiática da soja por piramidação gênica
title Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding
spellingShingle Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding
Meira, Daniela
Soja - Cultivo
Ferrugem asiática
Grãos - Doenças e pragas
Soja - Melhoramento genético
Genes - Pesquisa
Soybean - Planting
Phakopsora pachyrhizi
Grain - Diseases and pests
Soybean - Breeding
Genes - Research
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA
Agronomia
title_short Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding
title_full Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding
title_fullStr Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding
title_full_unstemmed Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding
title_sort Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding
author Meira, Daniela
author_facet Meira, Daniela
author_role author
dc.contributor.none.fl_str_mv Benin, Giovani
https://orcid.org/0000-0002-7354-5568
http://lattes.cnpq.br/8634180310157308
Beche, Eduardo
https://orcid.org/0000-0003-2318-3615
http://lattes.cnpq.br/7034958251695444
Malone, Gaspar
https://orcid.org/0000-0003-2812-063X
http://lattes.cnpq.br/3143574010442129
Benin, Giovani
https://orcid.org/0000-0002-7354-5568
http://lattes.cnpq.br/8634180310157308
Martins, Polyana Kelly
http://lattes.cnpq.br/5450356741124090
Brito Junior, Salvador Lima
https://orcid.org/0000-0002-0737-9186
http://lattes.cnpq.br/4171503619020575
dc.contributor.author.fl_str_mv Meira, Daniela
dc.subject.por.fl_str_mv Soja - Cultivo
Ferrugem asiática
Grãos - Doenças e pragas
Soja - Melhoramento genético
Genes - Pesquisa
Soybean - Planting
Phakopsora pachyrhizi
Grain - Diseases and pests
Soybean - Breeding
Genes - Research
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA
Agronomia
topic Soja - Cultivo
Ferrugem asiática
Grãos - Doenças e pragas
Soja - Melhoramento genético
Genes - Pesquisa
Soybean - Planting
Phakopsora pachyrhizi
Grain - Diseases and pests
Soybean - Breeding
Genes - Research
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA
Agronomia
description The objective of this study was to summarize the evolution of scientific research about fungus Phakopsora pachyrhizi affecting soybean; to develop and validate KASP molecular markers in soybean populations for Asian soybean rust (ASR) resistance genes Rpp1 (PI 200492, PI 594538A, PI 587880A, PI 594723), Rpp2 (PI 230970), Rpp3 (PI 506764), Rpp4 (PI 459025A), and Rpp5 (PI 506764, PI 200487), and pyramid Rpp genes in soybean populations. A scientometric analysis was applied in the Thomson Reuters Web of Science database that reported studies of the ASR from 1945 to 2018. Several articles aiming to understand fungal etiology and strategies to control the pathogen were published. There was an increase in the number of publications between 2005 and 2013 related to ASR dissemination in America. Several countries, institutions, and plant scientists are deeply involved in ASR research and have been making efforts to control this disease and ensure food security worldwide. The F2 soybean populations derived from crosses between rust-susceptible (55I57RSF IPRO, 63I64RSF IPRO) x rust-resistant sources (PI 200492, PI 594738A, PI 587880A, PI 594723, PI 230970, PI 506764, PI 459025A, and PI 200487), were individually evaluated in field conditions for ASR phenotypic reactions. SNP markers were developed according to markers associated with Rpp genes available at the SoyBase, using KASP methodology. Based on a slight difference in map position and different phenotypic disease reactions of PI 200492, the PI 594723 carries a resistance gene Rpp1-b mapped in Chr 18 in a 12.4 cM region. A total of 26 KASP markers were significantly associated with ASR. Among these, M1, M5, and M6 (Rpp1), M13 and M14 (Rpp2), M16, M17 and M20 (Rpp3), M25 and M26 (Rpp4), and M27 and M28 (Rpp5) had the potential to be used in marker-assisted selection strategies. From the markers validation, fifteen pyramided populations with different Rpp genes were developed, and the F3 lines were evaluated for phenotypic resistance and yield. The Rpp1-b of different resistant sources (PI 587880A, PI 594723, PI 4538A) have higher resistance and yield performance comparing other genes. The best gene combinations were Rpp1-b + Rpp5, showing neither uredinia formation nor sporulation in more than 70% of the F3 population. Rpp-pyramided lines developed in this study have the potential to be used in backcross programs for improving Asian soybean rust resistance.
publishDate 2022
dc.date.none.fl_str_mv 2022-02-21T12:29:55Z
2022-02-21T12:29:55Z
2022-02-11
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv MEIRA, Daniela. Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding. 2022. Tese (Doutorado em Agronomia) - Universidade Tecnológica Federal do Paraná, Pato Branco, 2022.
http://repositorio.utfpr.edu.br/jspui/handle/1/27205
identifier_str_mv MEIRA, Daniela. Durable resistance to asian soybean rust by gene pyramiding durable resistance to asian soybean rust by gene pyramiding. 2022. Tese (Doutorado em Agronomia) - Universidade Tecnológica Federal do Paraná, Pato Branco, 2022.
url http://repositorio.utfpr.edu.br/jspui/handle/1/27205
dc.language.iso.fl_str_mv por
eng
language por
eng
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eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Tecnológica Federal do Paraná
Pato Branco
Brasil
Programa de Pós-Graduação em Agronomia
UTFPR
publisher.none.fl_str_mv Universidade Tecnológica Federal do Paraná
Pato Branco
Brasil
Programa de Pós-Graduação em Agronomia
UTFPR
dc.source.none.fl_str_mv reponame:Repositório Institucional da UTFPR (da Universidade Tecnológica Federal do Paraná (RIUT))
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instname_str Universidade Tecnológica Federal do Paraná (UTFPR)
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institution UTFPR
reponame_str Repositório Institucional da UTFPR (da Universidade Tecnológica Federal do Paraná (RIUT))
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repository.name.fl_str_mv Repositório Institucional da UTFPR (da Universidade Tecnológica Federal do Paraná (RIUT)) - Universidade Tecnológica Federal do Paraná (UTFPR)
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