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Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina

Detalhes bibliográficos
Ano de defesa: 2016
Autor(a) principal: Nishi, Beatriz Caroline
Orientador(a): Freitas, Cleverson Diniz Teixeira de
Banca de defesa: Não Informado pela instituição
Tipo de documento: Dissertação
Tipo de acesso: Acesso aberto
Idioma: por
Instituição de defesa: Não Informado pela instituição
Programa de Pós-Graduação: Não Informado pela instituição
Departamento: Não Informado pela instituição
País: Não Informado pela instituição
Palavras-chave em Português:
Link de acesso: http://www.repositorio.ufc.br/handle/riufc/23924
Resumo: Pathogenesis-related proteins (PRs) are expressed in response to pathogenic infections and abiotic stresses. PR-5 family includes proteins related to thaumatin and osmotin. In this study, the presence of an ~22 kDa osmotin-like protein in Plumeria rubra latex was confirmed by western blot assay using anti-CpOsm antibodies, as described by Freitas et al., 2015. The cDNA fragment encoding this osmotin (PrOsm) was cloned, and then the predicted protein was characterized and modeled in silico. The amplification of the cDNA fragment encoding the PrOsm was carried out by RTPCR. The PCR product was ligated into pGEM-T Easy vector and cloned in E. coli DH5α cells. Clones obtained were submitted to sequencing. The computational analysis of the deduced sequences of P. rubra osmotins (PrOsms) showed that the proteins have an apparent molecular weight about 22 kDa and contain 16 cysteine residues involved in 8 disulfide bonds, stabilizing the protein structure. The PrOsms structure exhibits a typical architecture of TLPs, composed by three domains. Mapping of the electrostatic potentials showed that PrOsms contain, on its surface, an acidic cleft, between domains I and II. The PrOsms were evaluated for their ability to interact with human adiponectin receptors (AdipoR1 and AdipoR2) in silico. Molecular docking suggests that PrOsms are able to interact with adiponectin receptors, similarly to AdipoQ, being potential therapeutic targets for the control of obesity-related diseases, including type 2 diabetes and metabolic syndrome.
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spelling Nishi, Beatriz CarolineFreitas, Cleverson Diniz Teixeira de2017-07-10T17:50:18Z2017-07-10T17:50:18Z2016NISHI, Beatriz Caroline. Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina. 2016. 111 f. Dissertação (Mestrado em Bioquímica)- Universidade Federal do Ceará, Fortaleza, 2016.http://www.repositorio.ufc.br/handle/riufc/23924Pathogenesis-related proteins (PRs) are expressed in response to pathogenic infections and abiotic stresses. PR-5 family includes proteins related to thaumatin and osmotin. In this study, the presence of an ~22 kDa osmotin-like protein in Plumeria rubra latex was confirmed by western blot assay using anti-CpOsm antibodies, as described by Freitas et al., 2015. The cDNA fragment encoding this osmotin (PrOsm) was cloned, and then the predicted protein was characterized and modeled in silico. The amplification of the cDNA fragment encoding the PrOsm was carried out by RTPCR. The PCR product was ligated into pGEM-T Easy vector and cloned in E. coli DH5α cells. Clones obtained were submitted to sequencing. The computational analysis of the deduced sequences of P. rubra osmotins (PrOsms) showed that the proteins have an apparent molecular weight about 22 kDa and contain 16 cysteine residues involved in 8 disulfide bonds, stabilizing the protein structure. The PrOsms structure exhibits a typical architecture of TLPs, composed by three domains. Mapping of the electrostatic potentials showed that PrOsms contain, on its surface, an acidic cleft, between domains I and II. The PrOsms were evaluated for their ability to interact with human adiponectin receptors (AdipoR1 and AdipoR2) in silico. Molecular docking suggests that PrOsms are able to interact with adiponectin receptors, similarly to AdipoQ, being potential therapeutic targets for the control of obesity-related diseases, including type 2 diabetes and metabolic syndrome.Proteínas relacionadas à patogênese (PR proteínas) são expressas em resposta a infecções por patógenos e estresses abióticos. A família PR-5 inclui proteínas relacionadas à taumatina e a osmotina. Neste estudo, a presença de uma proteína do tipo osmotina de aproximadamente 22 kDa, no látex de Plumeria rubra, foi confirmada por meio de ensaios de western blot utilizando anticorpos anti-CpOsm (osmotina de C. procera), como descrito por Freitas e colaboradores (2015). O fragmento de cDNA codificando esta osmotina (PrOsm) foi clonado, a proteína predita foi caracterizada e sua estrutura foi modelada in silico. A amplificação do fragmento de cDNA codificante da PrOsm foi realizado por meio de RT-PCR. O fragmento amplificado, de aproximadamente 600 pb, foi ligado a um vetor de clonagem (pGEM-T Easy). Células de E. coli DH5α eletrocompetentes foram então transformadas com os plasmídeos recombinantes (pGEM-T Easy::PrOsm) e os insertos foram sequenciados. As sequências obtidas foram submetidas a análises in silico. As osmotinas de P. rubra (PrOsms) são proteínas de aproximadamente 22 kDa, apresentando 16 resíduos de cisteína, envolvidos na formação de 8 ligações dissulfeto. A estrutura das PrOsms exibe uma arquitetura típica de TLPs, composta por três domínios. O mapeamento dos potenciais eletrostáticos mostrou que as PrOsms apresentam, em sua superfície, uma fenda de natureza acídica, localizada entre os domínios I e II. A capacidade potencial das PrOsms de interagir com os receptores de adiponectina humana (AdipoR1 e AdipoR2) foi predita in silico. O docking molecular sugere que as PrOsms são capazes de interagir com os receptores de adiponectina, de forma similar a AdipoQ, sendo portanto potenciais alvos terapêuticos para o controle de doenças relacionadas à obesidade, incluindo diabetes tipo 2 e síndrome metabólica.PR proteínaModelagem comparativaLátexOsmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectinaOsmotin from Plumeria rubra: identification, molecular cloning, tridimensional modeling and its possible mimetic effect for Adiponectininfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisporreponame:Repositório Institucional da Universidade Federal do Ceará (UFC)instname:Universidade Federal do Ceará (UFC)instacron:UFCinfo:eu-repo/semantics/openAccessORIGINAL2016_dis_bcnishi.pdf2016_dis_bcnishi.pdfapplication/pdf6198229http://repositorio.ufc.br/bitstream/riufc/23924/1/2016_dis_bcnishi.pdf907d1b766e98e2a4ef1484116216b945MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748http://repositorio.ufc.br/bitstream/riufc/23924/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52riufc/239242019-04-12 19:42:38.01oai:repositorio.ufc.br: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Repositório InstitucionalPUBhttp://www.repositorio.ufc.br/ri-oai/requestbu@ufc.br || repositorio@ufc.bropendoar:2019-04-12T22:42:38Repositório Institucional da Universidade Federal do Ceará (UFC) - Universidade Federal do Ceará (UFC)false
dc.title.pt_BR.fl_str_mv Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina
dc.title.en.pt_BR.fl_str_mv Osmotin from Plumeria rubra: identification, molecular cloning, tridimensional modeling and its possible mimetic effect for Adiponectin
title Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina
spellingShingle Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina
Nishi, Beatriz Caroline
PR proteína
Modelagem comparativa
Látex
title_short Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina
title_full Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina
title_fullStr Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina
title_full_unstemmed Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina
title_sort Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina
author Nishi, Beatriz Caroline
author_facet Nishi, Beatriz Caroline
author_role author
dc.contributor.author.fl_str_mv Nishi, Beatriz Caroline
dc.contributor.advisor1.fl_str_mv Freitas, Cleverson Diniz Teixeira de
contributor_str_mv Freitas, Cleverson Diniz Teixeira de
dc.subject.por.fl_str_mv PR proteína
Modelagem comparativa
Látex
topic PR proteína
Modelagem comparativa
Látex
description Pathogenesis-related proteins (PRs) are expressed in response to pathogenic infections and abiotic stresses. PR-5 family includes proteins related to thaumatin and osmotin. In this study, the presence of an ~22 kDa osmotin-like protein in Plumeria rubra latex was confirmed by western blot assay using anti-CpOsm antibodies, as described by Freitas et al., 2015. The cDNA fragment encoding this osmotin (PrOsm) was cloned, and then the predicted protein was characterized and modeled in silico. The amplification of the cDNA fragment encoding the PrOsm was carried out by RTPCR. The PCR product was ligated into pGEM-T Easy vector and cloned in E. coli DH5α cells. Clones obtained were submitted to sequencing. The computational analysis of the deduced sequences of P. rubra osmotins (PrOsms) showed that the proteins have an apparent molecular weight about 22 kDa and contain 16 cysteine residues involved in 8 disulfide bonds, stabilizing the protein structure. The PrOsms structure exhibits a typical architecture of TLPs, composed by three domains. Mapping of the electrostatic potentials showed that PrOsms contain, on its surface, an acidic cleft, between domains I and II. The PrOsms were evaluated for their ability to interact with human adiponectin receptors (AdipoR1 and AdipoR2) in silico. Molecular docking suggests that PrOsms are able to interact with adiponectin receptors, similarly to AdipoQ, being potential therapeutic targets for the control of obesity-related diseases, including type 2 diabetes and metabolic syndrome.
publishDate 2016
dc.date.issued.fl_str_mv 2016
dc.date.accessioned.fl_str_mv 2017-07-10T17:50:18Z
dc.date.available.fl_str_mv 2017-07-10T17:50:18Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv NISHI, Beatriz Caroline. Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina. 2016. 111 f. Dissertação (Mestrado em Bioquímica)- Universidade Federal do Ceará, Fortaleza, 2016.
dc.identifier.uri.fl_str_mv http://www.repositorio.ufc.br/handle/riufc/23924
identifier_str_mv NISHI, Beatriz Caroline. Osmotina de Plumeria rubra: identificação, clonagem molecular, modelamento tridimensional e possível efeito mimético da adiponectina. 2016. 111 f. Dissertação (Mestrado em Bioquímica)- Universidade Federal do Ceará, Fortaleza, 2016.
url http://www.repositorio.ufc.br/handle/riufc/23924
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dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.source.none.fl_str_mv reponame:Repositório Institucional da Universidade Federal do Ceará (UFC)
instname:Universidade Federal do Ceará (UFC)
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instname_str Universidade Federal do Ceará (UFC)
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reponame_str Repositório Institucional da Universidade Federal do Ceará (UFC)
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